View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0922_low_8 (Length: 498)

Name: NF0922_low_8
Description: NF0922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0922_low_8
NF0922_low_8
[»] chr4 (24 HSPs)
chr4 (255-487)||(8363273-8363505)
chr4 (255-487)||(26495122-26495354)
chr4 (255-487)||(56156935-56157167)
chr4 (255-487)||(36244651-36244883)
chr4 (255-445)||(52137426-52137616)
chr4 (253-359)||(36243517-36243623)
chr4 (255-359)||(26496321-26496425)
chr4 (255-359)||(56157508-56157612)
chr4 (246-359)||(20620130-20620243)
chr4 (255-359)||(20625516-20625620)
chr4 (324-465)||(44499890-44500031)
chr4 (255-406)||(35348797-35348948)
chr4 (256-435)||(36846496-36846674)
chr4 (373-432)||(41348354-41348413)
chr4 (368-465)||(46795934-46796032)
chr4 (249-351)||(52138815-52138916)
chr4 (265-465)||(669550-669751)
chr4 (249-360)||(40723221-40723333)
chr4 (255-406)||(39056425-39056576)
chr4 (368-432)||(307747-307811)
chr4 (323-406)||(26631184-26631267)
chr4 (373-424)||(44664277-44664328)
chr4 (266-334)||(28590942-28591010)
chr4 (368-432)||(29665516-29665580)
[»] chr3 (14 HSPs)
chr3 (255-487)||(13621842-13622074)
chr3 (255-487)||(49380838-49381070)
chr3 (290-465)||(14744098-14744273)
chr3 (255-359)||(13620920-13621024)
chr3 (255-352)||(49379701-49379798)
chr3 (367-406)||(8372584-8372623)
chr3 (360-406)||(7921611-7921657)
chr3 (368-406)||(43345429-43345467)
chr3 (368-465)||(48253043-48253141)
chr3 (364-432)||(7271533-7271601)
chr3 (341-432)||(10301757-10301848)
chr3 (368-425)||(53809442-53809499)
chr3 (372-424)||(20486122-20486174)
chr3 (255-359)||(37416450-37416554)
[»] scaffold0114 (1 HSPs)
scaffold0114 (249-487)||(38534-38772)
[»] chr7 (25 HSPs)
chr7 (249-487)||(41329354-41329592)
chr7 (271-465)||(35296724-35296918)
chr7 (255-445)||(32653463-32653653)
chr7 (255-359)||(41328219-41328323)
chr7 (255-359)||(39981317-39981421)
chr7 (255-435)||(666726-666906)
chr7 (256-406)||(43442728-43442878)
chr7 (255-406)||(10955845-10955996)
chr7 (348-406)||(26146672-26146730)
chr7 (255-305)||(32653733-32653783)
chr7 (372-445)||(29589196-29589269)
chr7 (368-465)||(28326298-28326396)
chr7 (324-406)||(44376653-44376735)
chr7 (324-406)||(44385520-44385602)
chr7 (368-465)||(41515106-41515204)
chr7 (367-432)||(17288184-17288249)
chr7 (255-310)||(669449-669504)
chr7 (371-406)||(25532257-25532292)
chr7 (364-465)||(43931773-43931876)
chr7 (249-319)||(26146759-26146829)
chr7 (347-397)||(29861588-29861638)
chr7 (373-445)||(3330810-3330882)
chr7 (372-424)||(18670454-18670506)
chr7 (255-335)||(38539671-38539751)
chr7 (361-425)||(45721715-45721779)
[»] chr1 (18 HSPs)
chr1 (255-492)||(14479394-14479631)
chr1 (255-484)||(28051495-28051723)
chr1 (255-445)||(51446769-51446959)
chr1 (255-359)||(14478266-14478370)
chr1 (255-359)||(51445590-51445694)
chr1 (269-432)||(40533543-40533706)
chr1 (255-425)||(12667221-12667391)
chr1 (255-359)||(28050321-28050425)
chr1 (269-351)||(40634711-40634793)
chr1 (255-406)||(48528862-48529013)
chr1 (372-432)||(24516448-24516508)
chr1 (372-432)||(40110594-40110654)
chr1 (361-432)||(26803158-26803229)
chr1 (353-422)||(14429849-14429918)
chr1 (255-335)||(15746802-15746882)
chr1 (372-424)||(33941431-33941483)
chr1 (255-335)||(48527534-48527614)
chr1 (368-404)||(50679791-50679827)
[»] chr2 (18 HSPs)
chr2 (255-487)||(28610022-28610254)
chr2 (255-465)||(4919827-4920037)
chr2 (294-465)||(45699568-45699739)
chr2 (269-465)||(19397544-19397741)
chr2 (255-355)||(4921074-4921174)
chr2 (255-359)||(28611264-28611368)
chr2 (256-367)||(8321247-8321358)
chr2 (253-357)||(19398814-19398918)
chr2 (348-406)||(1147842-1147900)
chr2 (278-337)||(45699523-45699582)
chr2 (255-335)||(2276281-2276361)
chr2 (345-385)||(28544941-28544981)
chr2 (255-335)||(34147136-34147216)
chr2 (369-432)||(3533568-3533631)
chr2 (350-403)||(9474020-9474073)
chr2 (266-323)||(34512825-34512882)
chr2 (365-425)||(16289887-16289947)
chr2 (255-335)||(34148396-34148476)
[»] chr5 (26 HSPs)
chr5 (255-487)||(11796569-11796800)
chr5 (246-359)||(23325903-23326016)
chr5 (255-359)||(23333979-23334083)
chr5 (256-465)||(10736843-10737053)
chr5 (255-359)||(11797545-11797649)
chr5 (265-403)||(10978247-10978385)
chr5 (341-425)||(9219262-9219346)
chr5 (368-466)||(8188107-8188206)
chr5 (364-406)||(1273195-1273237)
chr5 (326-432)||(4124828-4124934)
chr5 (289-359)||(13520794-13520864)
chr5 (255-359)||(41144530-41144634)
chr5 (323-425)||(13519540-13519647)
chr5 (372-434)||(5975870-5975932)
chr5 (368-406)||(15857586-15857624)
chr5 (252-360)||(8521252-8521360)
chr5 (255-359)||(10735763-10735867)
chr5 (368-404)||(18695617-18695653)
chr5 (368-403)||(5384317-5384352)
chr5 (364-406)||(22812354-22812397)
chr5 (256-335)||(32757826-32757905)
chr5 (368-405)||(224559-224596)
chr5 (331-432)||(35047495-35047595)
chr5 (255-323)||(8523794-8523862)
chr5 (368-404)||(21389113-21389149)
chr5 (255-335)||(32759084-32759164)
[»] scaffold0219 (2 HSPs)
scaffold0219 (255-465)||(6895-7105)
scaffold0219 (255-367)||(8194-8306)
[»] chr8 (18 HSPs)
chr8 (255-445)||(9853567-9853757)
chr8 (273-465)||(42793717-42793910)
chr8 (255-359)||(9854891-9854995)
chr8 (99-200)||(45298855-45298962)
chr8 (269-405)||(38697170-38697306)
chr8 (341-465)||(24191463-24191587)
chr8 (341-432)||(43203219-43203310)
chr8 (347-465)||(45395924-45396042)
chr8 (372-432)||(22621076-22621136)
chr8 (323-406)||(31844436-31844519)
chr8 (246-335)||(38696299-38696388)
chr8 (255-310)||(28291295-28291350)
chr8 (361-432)||(39516439-39516510)
chr8 (368-406)||(16362529-16362567)
chr8 (250-335)||(28291401-28291486)
chr8 (369-406)||(34616245-34616282)
chr8 (362-406)||(36757188-36757232)
chr8 (267-359)||(38697880-38697972)
[»] chr6 (5 HSPs)
chr6 (255-359)||(11722786-11722890)
chr6 (285-359)||(21777496-21777570)
chr6 (354-401)||(138176-138223)
chr6 (354-401)||(146197-146244)
chr6 (364-465)||(18242215-18242317)
[»] scaffold0011 (2 HSPs)
scaffold0011 (255-335)||(128627-128707)
scaffold0011 (255-335)||(127433-127513)
[»] scaffold2071 (1 HSPs)
scaffold2071 (255-335)||(717-797)
[»] scaffold1251 (1 HSPs)
scaffold1251 (255-335)||(1121-1201)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 255 - 487
Target Start/End: Complemental strand, 8363505 - 8363273
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||    
T  8363505 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccctttggttttgctccgttag 8363406  T
Q  355 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagccatcgac 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||      
T  8363405 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattcgtcgtttgattgcatgtccattatacctataatgagccatcggt 8363306  T
Q  455 acctaatttttccagcaccatcatcttctctct 487  Q
    |||||||||||||||||| ||||||||||||||    
T  8363305 acctaatttttccagcactatcatcttctctct 8363273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 255 - 487
Target Start/End: Original strand, 26495122 - 26495354
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    |||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  26495122 cttaattgaatatttggtcccctaaataattatgagtttacattttgctcctataaattgtaaaactcacattttggtccccttggttttgctccgtcag 26495221  T
Q  355 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagccatcgac 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||  |||||||||||||||||||||| |    
T  26495222 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagccgtttgattgcatgtctgttatacctatagtgagccatcggc 26495321  T
Q  455 acctaatttttccagcaccatcatcttctctct 487  Q
    |||||||||||||||||| ||||||||||||||    
T  26495322 acctaatttttccagcactatcatcttctctct 26495354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 255 - 487
Target Start/End: Original strand, 56156935 - 56157167
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| | |||||||||||||||||     
T  56156935 cttaattggatatttggtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttggtctccttggttttgctccgtcaa 56157034  T
Q  355 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagccatcgac 454  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||| |||||    
T  56157035 tcaaattgaccccctccgttagttttttaatgtttaaaatttttgatatgatattagccgtttggttgcatgtccattatacctatagtgagccgtcgac 56157134  T
Q  455 acctaatttttccagcaccatcatcttctctct 487  Q
    ||||| |||||||||| | || |||||||||||    
T  56157135 acctagtttttccagcgctattatcttctctct 56157167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 255 - 487
Target Start/End: Complemental strand, 36244883 - 36244651
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||| ||| ||||||| ||||||||||||||| ||||| ||| ||||||||||||||    
T  36244883 cttaattggatatttggtccccaaaataattatgagtttacattttgatcccataaattgtaaaactcacatttttgtccccttgattttgctccgtcag 36244784  T
Q  355 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagccatcgac 454  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||| |||| ||| |    
T  36244783 tcaaattgatcccctccgttagttttttaatgtttaaaatgtttgatatgatattagccgtttgattgcatgtccattatacctatagtcagccgtcggc 36244684  T
Q  455 acctaatttttccagcaccatcatcttctctct 487  Q
    |||||||||||||||| | ||||||||||||||    
T  36244683 acctaatttttccagctctatcatcttctctct 36244651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 255 - 445
Target Start/End: Original strand, 52137426 - 52137616
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    |||||||||| ||||||||| ||||||||||||| |||||||||||||||| ||||||| ||||||  ||||||||||||  |||||||| ||||||| |    
T  52137426 cttaattggatatttggtcctctaaataattatgtgtttacattttggtcccataaattgtaaaaccaacattttggtcctcttggttttactccgtcgg 52137525  T
Q  355 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtga 445  Q
    ||||||| |||  |||||||||||||| ||||| |||| ||||||||||||| |||  ||||||||||||| |||||||||| ||||||||    
T  52137526 tcaaattcatcatctccgttagtttttcaatgtctaaattttttgatatgattttaaccgtttgattgcatgtccattatacttatagtga 52137616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 253 - 359
Target Start/End: Original strand, 36243517 - 36243623
Alignment:
Q  253 gacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtc 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||| ||     
T  36243517 gacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccccttagttttgctctgtt 36243616  T
Q  353 agtcaaa 359  Q
    |||||||    
T  36243617 agtcaaa 36243623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 255 - 359
Target Start/End: Complemental strand, 26496425 - 26496321
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    |||||||||||||||||||| |||| |||||||| |||||||||||||||| ||||||| ||||||||||||||||||||  || | |||||||||||||    
T  26496425 cttaattggacatttggtcctctaactaattatgtgtttacattttggtcccataaattgtaaaactcacattttggtcctcttaggtttgctccgtcag 26496326  T
Q  355 tcaaa 359  Q
    |||||    
T  26496325 tcaaa 26496321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 255 - 359
Target Start/End: Complemental strand, 56157612 - 56157508
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    |||||||||| ||||||||| ||||||||||||| ||||||||||||||   ||||||| ||||||||||||||||||||| ||||||||||||| | ||    
T  56157612 cttaattggatatttggtcctctaaataattatgcgtttacattttggtttcataaattgtaaaactcacattttggtccctttggttttgctccattag 56157513  T
Q  355 tcaaa 359  Q
    |||||    
T  56157512 tcaaa 56157508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 246 - 359
Target Start/End: Original strand, 20620130 - 20620243
Alignment:
Q  246 ttttattgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttg 345  Q
    |||| ||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| || ||||||||||| ||  ||||  |||||||||    
T  20620130 tttttttggcttaattggacctttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaactcacagttgagtcctcttggttttg 20620229  T
Q  346 ctccgtcagtcaaa 359  Q
     |||||||||||||    
T  20620230 gtccgtcagtcaaa 20620243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 255 - 359
Target Start/End: Complemental strand, 20625620 - 20625516
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || ||||||| ||| ||  ||||  ||||||||| ||||||||    
T  20625620 cttaattggacatttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaacttacagttgagtcctcttggttttggtccgtcag 20625521  T
Q  355 tcaaa 359  Q
    |||||    
T  20625520 tcaaa 20625516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 324 - 465
Target Start/End: Complemental strand, 44500031 - 44499890
Alignment:
Q  324 cattttggtcccattggttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgc 423  Q
    |||||||||||| |   ||||||||||| |||||||||||||| |||||||||||| ||||||| || | |||||||| |||| |||  |||||||||||    
T  44500031 cattttggtcccttaacttttgctccgttagtcaaattgatccactccgttagtttgttaatgtctatattttttgatttgattttaaccgtttgattgc 44499932  T
Q  424 atatccattatacctatagtgagccatcgacacctaattttt 465  Q
    || |||||| || ||||||||| || ||  ||||||||||||    
T  44499931 atgtccattgtatctatagtgaaccgtcagcacctaattttt 44499890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 255 - 406
Target Start/End: Original strand, 35348797 - 35348948
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    ||||||||||| ||||||||| ||| |||||    |||| ||||||||||| |||| || |||||   || |||| |||||  | |||||||| ||||||    
T  35348797 cttaattggacttttggtcccttaagtaatttgttgttttcattttggtcccataacttgtaaaatcaacgttttagtccctcttgttttgcttcgtcag 35348896  T
Q  355 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 406  Q
    |||| ||  ||||||||||||| |||||||||| ||||||||||||| ||||    
T  35348897 tcaatttagtcccctccgttagctttttaatgtctaaaatttttgatttgat 35348948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 256 - 435
Target Start/End: Complemental strand, 36846674 - 36846496
Alignment:
Q  256 ttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcagt 355  Q
    |||||||||| ||||| ||||||| |||||    |||| ||||||||||| |||| |  |||||   |||||||||||||  | ||||||||||||  ||    
T  36846674 ttaattggacttttggccccctaagtaatttgttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttcgt 36846575  T
Q  356 caaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattata 435  Q
    ||| ||| |||| ||||||||| ||||||||| |||| |||||||| |||| |||  | ||||||||||| |||||||||    
T  36846574 caatttggtcccttccgttagt-ttttaatgtctaaattttttgatttgattttaaccatttgattgcatgtccattata 36846496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 373 - 432
Target Start/End: Original strand, 41348354 - 41348413
Alignment:
Q  373 ttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccatt 432  Q
    ||||||||||||||| |||||||||||||||||| ||| || ||||||||||| ||||||    
T  41348354 ttagttttttaatgtataaaatttttgatatgattttaatcatttgattgcatgtccatt 41348413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 368 - 465
Target Start/End: Complemental strand, 46796032 - 46795934
Alignment:
Q  368 ctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacct-atagtgagccatcgacacctaattttt 465  Q
    |||||||||||||||||||| |||| ||||||||||||| |||  | ||||||||||| |||||| ||  | ||||||| || ||| ||||||||||||    
T  46796032 ctccgttagttttttaatgtctaaattttttgatatgattttaaccatttgattgcatgtccattgtatttaatagtgaaccgtcggcacctaattttt 46795934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 249 - 351
Target Start/End: Complemental strand, 52138916 - 52138815
Alignment:
Q  249 tattgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctc 348  Q
    ||||| ||||||| |||||||| ||| ||||||||||||| ||||| |||||| ||  ||||||| ||| || | |||||||||||  ||||||||||||    
T  52138916 tattggcttaattcgacatttgatcctctaaataattatgcgtttatattttgatcacataaattgtaagac-cccattttggtcctcttggttttgctc 52138818  T
Q  349 cgt 351  Q
    |||    
T  52138817 cgt 52138815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 465
Target Start/End: Complemental strand, 669751 - 669550
Alignment:
Q  265 catttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgct-ccgtcagtcaaattga 363  Q
    |||||||||||| || ||||| | | ||| ||||||||||| |||| | ||||||||||||||||||||||     | | | | |||||||||||||||     
T  669751 catttggtcccccaattaattttcaattttcattttggtcccataattaataaaactcacattttggtccctcaattataggtcccgtcagtcaaattgg 669652  T
Q  364 tcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagccatcgacacctaattt 463  Q
    ||| |||| ||| | ||||||||| | ||  | || ||| ||| |||  ||||||||||||| ||||||||| |||  ||||||||||  ||| ||||||    
T  669651 tccactccattaatgttttaatgtctgaatatatttatacgattttaaccgtttgattgcatgtccattatatctacggtgagccatcatcacttaattt 669552  T
Q  464 tt 465  Q
    ||    
T  669551 tt 669550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 360
Target Start/End: Original strand, 40723221 - 40723333
Alignment:
Q  249 tattgacttaattggacatttggtcccctaaataattatg-agtttacattttggtcctataaattataaaactcacattttggtcccattggttttgct 347  Q
    ||||| |||||| || ||||||||||||||| ||||| || | ||| ||||||||||| |||| | ||||||||||  |||||||||| | |||||  ||    
T  40723221 tattggcttaataggtcatttggtcccctaattaattttgcaattttcattttggtcccataactaataaaactcatgttttggtcccttaggtttatct 40723320  T
Q  348 ccgtcagtcaaat 360  Q
    ||||| |||||||    
T  40723321 ccgtcggtcaaat 40723333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 255 - 406
Target Start/End: Original strand, 39056425 - 39056576
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    ||||||||||| ||||||||| ||| |||||    |||| ||||||||||  |||| || |||||   || |||| |||||  | |||||||||||| ||    
T  39056425 cttaattggacttttggtcccttaagtaatttgttgttttcattttggtctcataatttgtaaaatcaacgttttagtccctcttgttttgctccgttag 39056524  T
Q  355 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 406  Q
    |||| ||  | ||| ||||||| |||||||||| ||||||||||||| ||||    
T  39056525 tcaatttagttcccaccgttagctttttaatgtctaaaatttttgatttgat 39056576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 432
Target Start/End: Complemental strand, 307811 - 307747
Alignment:
Q  368 ctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccatt 432  Q
    ||||||| ||||||||||||||||| ||||||||||||| |||  | | ||||||||| ||||||    
T  307811 ctccgttggttttttaatgtttaaattttttgatatgattttaaccatatgattgcatgtccatt 307747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 406
Target Start/End: Complemental strand, 26631267 - 26631184
Alignment:
Q  323 acattttggtcccattggttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 406  Q
    |||||||||| ||  | |||||||||||| |||||| ||| ||||||||||| ||  |||||||| |||| |||||||| ||||    
T  26631267 acattttggttcctcttgttttgctccgttagtcaatttggtcccctccgtttgtcctttaatgtctaaattttttgatttgat 26631184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 424
Target Start/End: Complemental strand, 44664328 - 44664277
Alignment:
Q  373 ttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgca 424  Q
    ||||||||||||||| ||| |||||| |||||||  ||||||||||||||||    
T  44664328 ttagttttttaatgtataatatttttaatatgattatagtcgtttgattgca 44664277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 334
Target Start/End: Complemental strand, 28591010 - 28590942
Alignment:
Q  266 atttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcc 334  Q
    |||||||||| |||||||||   || || ||||||||||| |||||| ||||||||||  |||||||||    
T  28591010 atttggtcccttaaataatttccagctttcattttggtcccataaataataaaactcatgttttggtcc 28590942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 432
Target Start/End: Complemental strand, 29665580 - 29665516
Alignment:
Q  368 ctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccatt 432  Q
    |||||||| ||||||||||| |||| |||||||| |||| |||  | ||||||||||| ||||||    
T  29665580 ctccgttaattttttaatgtctaaattttttgatgtgattttaaccatttgattgcatgtccatt 29665516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 255 - 487
Target Start/End: Complemental strand, 13622074 - 13621842
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||| ||||||    
T  13622074 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccccttgattttgcttcgtcag 13621975  T
Q  355 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagccatcgac 454  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |    
T  13621974 tcaaattgatcccctcagttagttttttaatatttaaaatttttgatatgatattagccgtttgattgcatgtccattatacctatagtgagccatcggc 13621875  T
Q  455 acctaatttttccagcaccatcatcttctctct 487  Q
    |||||||||||||||||| ||||||||||||||    
T  13621874 acctaatttttccagcactatcatcttctctct 13621842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 255 - 487
Target Start/End: Complemental strand, 49381070 - 49380838
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| || ||||||||||||||||||    
T  49381070 cttaattggatatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcatattttggtacccttggttttgctccgtcag 49380971  T
Q  355 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagccatcgac 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||| |    
T  49380970 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagccgtttgattgcatgtccattatacctatagtgagctatcggc 49380871  T
Q  455 acctaatttttccagcaccatcatcttctctct 487  Q
    |||||||||||||||||| ||||||||||||||    
T  49380870 acctaatttttccagcactatcatcttctctct 49380838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 290 - 465
Target Start/End: Original strand, 14744098 - 14744273
Alignment:
Q  290 gtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcagtcaaattgatcccctccgttagttttttaatgttt 389  Q
    |||||||||||||||  ||||||| ||||||||||||||||||  ||||||||||||||||| |||||||||||||  |||||||| ||||||||||| |    
T  14744098 gtttacattttggtctcataaattgtaaaactcacattttggtttcattggttttgctccgttagtcaaattgatcatctccgttaattttttaatgtct 14744197  T
Q  390 aaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagccatcgacacctaattttt 465  Q
    ||| ||||||||||||| |||  || |||||||||| |||||||||| |||||||| |||||  ||||||||||||    
T  14744198 aaattttttgatatgattttaaccgattgattgcatgtccattatacatatagtgaaccatcagcacctaattttt 14744273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 255 - 359
Target Start/End: Original strand, 13620920 - 13621024
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    ||||||| |||||||||||| ||||||||||||| |||||||||||||||  ||||||| ||||||||||||||||||||  ||||||||||||||||||    
T  13620920 cttaatttgacatttggtcctctaaataattatgcgtttacattttggtctcataaattgtaaaactcacattttggtcctcttggttttgctccgtcag 13621019  T
Q  355 tcaaa 359  Q
    |||||    
T  13621020 tcaaa 13621024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 255 - 352
Target Start/End: Original strand, 49379701 - 49379798
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtc 352  Q
    |||||||||||||||||||| ||||||||||||| ||||| |||||||||| ||||||| ||||||||||||||| || |  ||||||||||||||||    
T  49379701 cttaattggacatttggtcctctaaataattatgcgtttatattttggtcccataaattgtaaaactcacattttagttctcttggttttgctccgtc 49379798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 367 - 406
Target Start/End: Complemental strand, 8372623 - 8372584
Alignment:
Q  367 cctccgttagttttttaatgtttaaaatttttgatatgat 406  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  8372623 cctccgttagttttttaatgtttaatatttttgatatgat 8372584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 406
Target Start/End: Complemental strand, 7921657 - 7921611
Alignment:
Q  360 ttgatcccctccgttagttttttaatgtttaaaatttttgatatgat 406  Q
    ||||||| |||||||||||||||||||| ||| ||||||||||||||    
T  7921657 ttgatcctctccgttagttttttaatgtctaatatttttgatatgat 7921611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 406
Target Start/End: Original strand, 43345429 - 43345467
Alignment:
Q  368 ctccgttagttttttaatgtttaaaatttttgatatgat 406  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  43345429 ctccgttagttttttaatgtttaatatttttgatatgat 43345467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 465
Target Start/End: Original strand, 48253043 - 48253141
Alignment:
Q  368 ctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacct-atagtgagccatcgacacctaattttt 465  Q
    |||||||||||||||||||| |||| |||||||| |||| |||  | ||||||||||| |||||| || || ||||||| |  || |||||||||||||    
T  48253043 ctccgttagttttttaatgtctaaattttttgatgtgattttaaccatttgattgcatgtccattgtatctaatagtgaactgtcaacacctaattttt 48253141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 432
Target Start/End: Complemental strand, 7271601 - 7271533
Alignment:
Q  364 tcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccatt 432  Q
    |||||||||||||||||||||||| |||| |||||||| | || |||  | ||||||||||| ||||||    
T  7271601 tcccctccgttagttttttaatgtctaaactttttgatttaattttaaccatttgattgcatgtccatt 7271533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 432
Target Start/End: Complemental strand, 10301848 - 10301757
Alignment:
Q  341 ttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccatt 432  Q
    ||||||||||| |||||| ||| |  |||| |||||||||||||||| |||| |||||||| |||| |||  | |||||||| || ||||||    
T  10301848 ttttgctccgttagtcaatttggtgtcctctgttagttttttaatgtctaaattttttgatttgattttaaccatttgattgaatgtccatt 10301757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 425
Target Start/End: Complemental strand, 53809499 - 53809442
Alignment:
Q  368 ctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcat 425  Q
    |||||||||||||||||||| |||| |||||||||| || |||  | |||||||||||    
T  53809499 ctccgttagttttttaatgtctaaattttttgatataattttaaccatttgattgcat 53809442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 424
Target Start/End: Original strand, 20486122 - 20486174
Alignment:
Q  372 gttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgca 424  Q
    |||||||||||||||| ||||| |||| ||||||| ||| || ||||||||||    
T  20486122 gttagttttttaatgtctaaaacttttaatatgattttaatcatttgattgca 20486174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 359
Target Start/End: Complemental strand, 37416554 - 37416450
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    ||||||||| | ||||||||||||| |||||    |||| ||||||||| | |||| | ||||||   |||||||||||||  | |||||||||||| ||    
T  37416554 cttaattggccttttggtcccctaagtaatttgttgttttcattttggttccataactcataaaatcaacattttggtccctcttgttttgctccgttag 37416455  T
Q  355 tcaaa 359  Q
    |||||    
T  37416454 tcaaa 37416450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 249 - 487
Target Start/End: Original strand, 38534 - 38772
Alignment:
Q  249 tattgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctc 348  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||| |||||||| |||    
T  38534 tattggcttaattggacatttggtcccctaaataattatgagtttccattttggtcccataaattgtaaaactcacattttggtccccttggttttcctc 38633  T
Q  349 cgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagcc 448  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  38634 cgtcagtcaaattgatcccctccgttagttttttaatgattaaaattttttatatgatattagccgtttgattgcatgtccattatacctatagtgagcc 38733  T
Q  449 atcgacacctaatttttccagcaccatcatcttctctct 487  Q
     ||| ||||||||||||||||||| ||||||||||||||    
T  38734 gtcggcacctaatttttccagcactatcatcttctctct 38772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 183; Significance: 9e-99; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 249 - 487
Target Start/End: Complemental strand, 41329592 - 41329354
Alignment:
Q  249 tattgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctc 348  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||| |||    
T  41329592 tattggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccccttgattttactc 41329493  T
Q  349 cgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagcc 448  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||  ||||||||||||| ||||||||||||||||||||||    
T  41329492 cgtcagtcaaattgatcccctccgttagatttttaatgtttaaattttttgatgtgatattaaccgtttgattgcatgtccattatacctatagtgagcc 41329393  T
Q  449 atcgacacctaatttttccagcaccatcatcttctctct 487  Q
    |||| |||||||||||| |||||| ||||||||||||||    
T  41329392 atcggcacctaattttttcagcactatcatcttctctct 41329354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 271 - 465
Target Start/End: Complemental strand, 35296918 - 35296724
Alignment:
Q  271 gtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcagtcaaattgatcccctc 370  Q
    |||| ||||||||||   ||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||| |||||||||||||  |||    
T  35296918 gtcctctaaataatttgtagtttacattttggtcctataaattgtaaaactcacattttggtacccttggttttgctccgttagtcaaattgatcatctc 35296819  T
Q  371 cgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagccatcgacacctaattttt 465  Q
    ||||| ||||||||||| |||| ||||||||||||| |||  ||||||||||||| |||||||||| |||| ||||||| |  ||||||||||||    
T  35296818 cgttaattttttaatgtctaaattttttgatatgattttaaccgtttgattgcatgtccattatacatataatgagccaccagcacctaattttt 35296724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 255 - 445
Target Start/End: Original strand, 32653463 - 32653653
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    |||||||||| |||| ||||| |||||||||||| |||||||||||||||  ||||||| |||||||||||||| |||||| |||||||||||||||| |    
T  32653463 cttaattggatatttagtcccttaaataattatgcgtttacattttggtctcataaattgtaaaactcacatttcggtccccttggttttgctccgtcgg 32653562  T
Q  355 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtga 445  Q
    ||| | || |||| ||||||||||||||||||  ||||||||||||||| || |||  ||||||||||||| ||||||||||||| |||||    
T  32653563 tcagaatggtcccatccgttagttttttaatgactaaaatttttgatatcattttaaccgtttgattgcatgtccattatacctacagtga 32653653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 255 - 359
Target Start/End: Original strand, 41328219 - 41328323
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||  ||||||||| || ||||     
T  41328219 cttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcctcttggttttgatcagtcaa 41328318  T
Q  355 tcaaa 359  Q
    |||||    
T  41328319 tcaaa 41328323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 255 - 359
Target Start/End: Original strand, 39981317 - 39981421
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    |||||||||||||||| ||| |||||||||| || |||||||||||||||| ||||||| ||||| ||||||||||||||  ||||||||||| ||||||    
T  39981317 cttaattggacatttgatcctctaaataattgtgcgtttacattttggtcccataaattgtaaaattcacattttggtccttttggttttgcttcgtcag 39981416  T
Q  355 tcaaa 359  Q
    |||||    
T  39981417 tcaaa 39981421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 255 - 435
Target Start/End: Original strand, 666726 - 666906
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    ||||||||||  ||| ||||||||||||||||| ||||| ||||||| ||  |||| | |||||| | | |||| ||||||  | |||||||||||| ||    
T  666726 cttaattggatttttagtcccctaaataattatcagttttcattttgatctcataactcataaaattaatatttcggtccctcttgttttgctccgttag 666825  T
Q  355 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattata 435  Q
    |||| ||| |||||||||||||| |||||||||  ||| |||||||| |||| |||  | ||| ||||||| || ||||||    
T  666826 tcaatttggtcccctccgttagtattttaatgtcgaaattttttgatttgattttaaccatttaattgcatgtctattata 666906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 406
Target Start/End: Complemental strand, 43442878 - 43442728
Alignment:
Q  256 ttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcagt 355  Q
    ||||||| || ||||||||||||| |||||    |||| ||| ||||||| |||| |  |||||   |||||||||||||  | |||||||||||| |||    
T  43442878 ttaattgaacttttggtcccctaagtaatttgttgttttcatattggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttagt 43442779  T
Q  356 caaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 406  Q
    ||| ||| |||||||||||||| ||||||||| |||| |||||||| ||||    
T  43442778 caatttggtcccctccgttagtcttttaatgtctaaattttttgatttgat 43442728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 255 - 406
Target Start/End: Original strand, 10955845 - 10955996
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    ||||||||||| ||||||||| ||| |||||    |||| ||||||| | | |||| ||||||||   || |||| |||||  | |||||||||||| ||    
T  10955845 cttaattggacttttggtcccttaagtaatttgttgttttcattttgattccataacttataaaatcaacgttttagtccctcttgttttgctccgttag 10955944  T
Q  355 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 406  Q
    |||| ||  ||||||||||||| |||||||||| ||||||||||||| ||||    
T  10955945 tcaatttagtcccctccgttagatttttaatgtctaaaatttttgatttgat 10955996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 348 - 406
Target Start/End: Complemental strand, 26146730 - 26146672
Alignment:
Q  348 ccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 406  Q
    |||| ||||||||||||||||||||||| ||||||||||| |||| |||||||||||||    
T  26146730 ccgttagtcaaattgatcccctccgttatttttttaatgtctaaactttttgatatgat 26146672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 32653783 - 32653733
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcc 305  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  32653783 cttaattggacatttggtcccctaaataattatgtatttacattttggtcc 32653733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 372 - 445
Target Start/End: Complemental strand, 29589269 - 29589196
Alignment:
Q  372 gttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtga 445  Q
    |||||||||||||||||||||||||||||| |||| |||  | ||||||| |||||||||||||  ||||||||    
T  29589269 gttagttttttaatgtttaaaatttttgatttgattttaaccatttgatttcatatccattatatttatagtga 29589196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 368 - 465
Target Start/End: Complemental strand, 28326396 - 28326298
Alignment:
Q  368 ctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacct-atagtgagccatcgacacctaattttt 465  Q
    |||||||||||||||||||| |||| ||||| ||||||| |||  | ||||||||||| |||||||||  | ||||||| || ||| ||||||||||||    
T  28326396 ctccgttagttttttaatgtctaaattttttaatatgattttaaccatttgattgcatgtccattatatttaatagtgaaccgtcggcacctaattttt 28326298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 324 - 406
Target Start/End: Complemental strand, 44376735 - 44376653
Alignment:
Q  324 cattttggtcccattggttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 406  Q
    |||||||||||| |   ||||||||| | ||||||||| |||| |||||||||||||||||||| |||| |||||||| ||||    
T  44376735 cattttggtcccttaacttttgctccattagtcaaattaatccactccgttagttttttaatgtctaaattttttgatttgat 44376653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 324 - 406
Target Start/End: Complemental strand, 44385602 - 44385520
Alignment:
Q  324 cattttggtcccattggttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 406  Q
    |||||||||||| |   ||||||||| | ||||||||| |||| |||||||||||||||||||| |||| |||||||| ||||    
T  44385602 cattttggtcccttaacttttgctccattagtcaaattaatccactccgttagttttttaatgtctaaattttttgatttgat 44385520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 465
Target Start/End: Original strand, 41515106 - 41515204
Alignment:
Q  368 ctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacct-atagtgagccatcgacacctaattttt 465  Q
    |||||||| ||||||||||| |||| ||||| ||||||| |||  | ||||||||||| |||||||||  | ||||||| || ||| ||||||||||||    
T  41515106 ctccgttaattttttaatgtctaaagttttttatatgattttaaccatttgattgcatgtccattatatttaatagtgaaccgtcggcacctaattttt 41515204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 367 - 432
Target Start/End: Complemental strand, 17288249 - 17288184
Alignment:
Q  367 cctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccatt 432  Q
    ||||||||||||||||||||| |||| ||||||||||||| |||    ||||||||||| ||||||    
T  17288249 cctccgttagttttttaatgtctaaattttttgatatgattttaactatttgattgcatgtccatt 17288184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 310
Target Start/End: Complemental strand, 669504 - 669449
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataa 310  Q
    ||||||||||  ||||||||||||| ||||||| ||||| ||||||||||| ||||    
T  669504 cttaattggatttttggtcccctaagtaattatcagttttcattttggtcccataa 669449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 406
Target Start/End: Original strand, 25532257 - 25532292
Alignment:
Q  371 cgttagttttttaatgtttaaaatttttgatatgat 406  Q
    ||||||||||||||||||||| ||||||||||||||    
T  25532257 cgttagttttttaatgtttaatatttttgatatgat 25532292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 465
Target Start/End: Complemental strand, 43931876 - 43931773
Alignment:
Q  364 tcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgc-atatccattatac-ctatagtgagccatcgacacctaat 461  Q
    |||||||||||||||||||||||| ||| |||||||| ||||| | | || || |||||| | ||||||||||| | ||||||| |||||  ||| ||||    
T  43931876 tcccctccgttagttttttaatgtctaacatttttgaaatgatttgaatcattcgattgcaagatccattatacacaatagtgaaccatcaccacataat 43931777  T
Q  462 tttt 465  Q
    ||||    
T  43931776 tttt 43931773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 319
Target Start/End: Complemental strand, 26146829 - 26146759
Alignment:
Q  249 tattgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaa 319  Q
    ||||| ||||||||||| ||||||||||||| |||||    |||| ||||||| ||||||||||| |||||    
T  26146829 tattggcttaattggacttttggtcccctaactaatttgttgttttcattttgatcctataaattttaaaa 26146759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 397
Target Start/End: Original strand, 29861588 - 29861638
Alignment:
Q  347 tccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttt 397  Q
    ||||||||||||||||||||  |||||||||||||| |||| ||| |||||    
T  29861588 tccgtcagtcaaattgatccattccgttagtttttttatgtctaatatttt 29861638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 445
Target Start/End: Original strand, 3330810 - 3330882
Alignment:
Q  373 ttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtga 445  Q
    ||||||| ||||||| |||| |||||||| |||| |||  ||||||||||||| | |||| || |||||||||    
T  3330810 ttagtttgttaatgtctaaattttttgatttgattttaaccgtttgattgcatgttcattgtatctatagtga 3330882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 424
Target Start/End: Complemental strand, 18670506 - 18670454
Alignment:
Q  372 gttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgca 424  Q
    |||||||||||||||| ||| |||||| |||||||  ||| ||||||||||||    
T  18670506 gttagttttttaatgtataatatttttaatatgattatagccgtttgattgca 18670454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 335
Target Start/End: Original strand, 38539671 - 38539751
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 335  Q
    |||||| || |||||| |||| ||| |||||   ||||| ||||||||||| |||||| ||||||||||  ||||||||||    
T  38539671 cttaataggtcatttgatcccttaattaatttcaagttttcattttggtcccataaataataaaactcatgttttggtccc 38539751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 425
Target Start/End: Complemental strand, 45721779 - 45721715
Alignment:
Q  361 tgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcat 425  Q
    |||||| |||||||||||||||||||| |||| ||||| || |||| |||  | |||||||||||    
T  45721779 tgatcctctccgttagttttttaatgtctaaatttttttatgtgattttaaccatttgattgcat 45721715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 182; Significance: 3e-98; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 255 - 492
Target Start/End: Complemental strand, 14479631 - 14479394
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||| ||||    
T  14479631 cttaattggacatttggtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttggtccccttggttttgctccatcag 14479532  T
Q  355 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagccatcgac 454  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||| ||  |    
T  14479531 tcaaattgatcccctccgttagttttttaatgattaaaatttttgatattatattagccgtttgattgcatgtccattatacctatagtgagccgtcagc 14479432  T
Q  455 acctaatttttccagcaccatcatcttctctctgctcc 492  Q
    ||||||||||||||| || |||||||||||||| ||||    
T  14479431 acctaatttttccaggactatcatcttctctcttctcc 14479394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 255 - 484
Target Start/End: Complemental strand, 28051723 - 28051495
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    |||||||||| ||||| | |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||| ||||||||||| ||    
T  28051723 cttaattggatatttgattccctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttggtccccttgattttgctccgttag 28051624  T
Q  355 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagccatcgac 454  Q
    |||||||||| |  ||||||| |||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||| ||| |    
T  28051623 tcaaattgattca-tccgttaattttttaatgtttaaaatttttgatatgatattagctgtttgattgcatgtccattatacctatagtgagccgtcggc 28051525  T
Q  455 acctaatttttccagcaccatcatcttctc 484  Q
    |||||||||||||||||| |||||||||||    
T  28051524 acctaatttttccagcactatcatcttctc 28051495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 255 - 445
Target Start/End: Complemental strand, 51446959 - 51446769
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    |||||||||||||||||||| |||||||||||||  ||||||||||||||  ||||||| |||||| |||||||||||||| ||||||||||||||||||    
T  51446959 cttaattggacatttggtcctctaaataattatgcatttacattttggtcacataaattgtaaaacccacattttggtccccttggttttgctccgtcag 51446860  T
Q  355 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtga 445  Q
    ||||||||||||||||||||||||||||||| | |||| ||||||||||||| |||   |||||||||||| |||||||||||||| ||||    
T  51446859 tcaaattgatcccctccgttagttttttaatatctaaattttttgatatgattttaactgtttgattgcatgtccattatacctattgtga 51446769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 255 - 359
Target Start/End: Original strand, 14478266 - 14478370
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| ||| ||||||| ||||||||||||||||||||  | ||||||||||||||||    
T  14478266 cttaattggacatttggtcctctaaataattatgtgtttacattttgatcccataaattgtaaaactcacattttggtcctctgggttttgctccgtcag 14478365  T
Q  355 tcaaa 359  Q
    |||||    
T  14478366 tcaaa 14478370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 255 - 359
Target Start/End: Original strand, 51445590 - 51445694
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||  ||||||||| || |||||    
T  51445590 cttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcctcttggttttgatctgtcag 51445689  T
Q  355 tcaaa 359  Q
    |||||    
T  51445690 tcaaa 51445694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 269 - 432
Target Start/End: Complemental strand, 40533706 - 40533543
Alignment:
Q  269 tggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcagtcaaattgatcccc 368  Q
    ||||||||||||||||||| ||||||||||||||| | ||||||| ||||||  |||||||||||||  | | |||||||||| |||||||  | |||||    
T  40533706 tggtcccctaaataattatcagtttacattttggttccataaattgtaaaaccaacattttggtccctctcgctttgctccgttagtcaaaaaggtcccc 40533607  T
Q  369 tccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccatt 432  Q
    ||||||| ||||||||||| ||||| |||||||||||| |||  | || |||||||| ||||||    
T  40533606 tccgttaattttttaatgtctaaaacttttgatatgattttaaccattggattgcatgtccatt 40533543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 255 - 425
Target Start/End: Complemental strand, 12667391 - 12667221
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    ||||||||||  ||| |||| |||||||||||| ||||| ||||||||||||| || |  ||||| | |||||| ||||||  | |||||||||||| ||    
T  12667391 cttaattggatttttagtcctctaaataattatcagttttcattttggtcctagaattcgtaaaattaacatttcggtccctcttgttttgctccgttag 12667292  T
Q  355 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcat 425  Q
    |||| ||| ||||||||||||||||||||||||  ||| |||||||| |||| ||| || |||||||||||    
T  12667291 tcaacttggtcccctccgttagttttttaatgtcgaaattttttgatttgattttaatcatttgattgcat 12667221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 255 - 359
Target Start/End: Original strand, 28050321 - 28050425
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    ||||||| ||||||||||||| |||||||||||| |||||||||||||||| ||||||| |||||  |||||||||||||| ||| ||||||||||| ||    
T  28050321 cttaattagacatttggtcccttaaataattatgtgtttacattttggtcccataaattgtaaaatccacattttggtccccttgattttgctccgttag 28050420  T
Q  355 tcaaa 359  Q
    |||||    
T  28050421 tcaaa 28050425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 269 - 351
Target Start/End: Complemental strand, 40634793 - 40634711
Alignment:
Q  269 tggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgt 351  Q
    |||||||||||||||||   ||||||||||||| ||| |||||| |||||||||||||||| ||||| ||| |||||||||||    
T  40634793 tggtcccctaaataatttgcagtttacattttgatccgataaatcataaaactcacattttcgtccccttgattttgctccgt 40634711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 406
Target Start/End: Complemental strand, 48529013 - 48528862
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    ||||||||||| |||||||||| || |||||    |||||||||||||||| |||| |  |||||   ||||||| |||||  |  |||| |||||| ||    
T  48529013 cttaattggacttttggtcccccaagtaatttgttgtttacattttggtcccataactcgtaaaatcaacattttagtccctcttatttttctccgttag 48528914  T
Q  355 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 406  Q
    |||| ||| |||| ||||||||||||||||| | ||||| ||||||| ||||    
T  48528913 tcaatttggtcccatccgttagttttttaatatctaaaacttttgatttgat 48528862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 432
Target Start/End: Original strand, 24516448 - 24516508
Alignment:
Q  372 gttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccatt 432  Q
    |||||||||||||||| ||||||| |||||||||| |||  | ||||||||||| ||||||    
T  24516448 gttagttttttaatgtataaaattcttgatatgattttaaccatttgattgcatgtccatt 24516508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 432
Target Start/End: Complemental strand, 40110654 - 40110594
Alignment:
Q  372 gttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccatt 432  Q
    |||||||||||||||| ||||||| |||||||||| |||  | ||||||||||| ||||||    
T  40110654 gttagttttttaatgtataaaattattgatatgattttaaccatttgattgcatgtccatt 40110594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 432
Target Start/End: Complemental strand, 26803229 - 26803158
Alignment:
Q  361 tgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccatt 432  Q
    |||||| ||| |||||| ||||||||| ||||||| |||||||||| |||  | ||||||||||| ||||||    
T  26803229 tgatcctctctgttagtattttaatgtataaaattcttgatatgattttaaccatttgattgcatgtccatt 26803158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 422
Target Start/End: Original strand, 14429849 - 14429918
Alignment:
Q  353 agtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattg 422  Q
    |||||||||||||  ||| |||| ||||||||||| ||| ||| |||||||||| |||  ||||||||||    
T  14429849 agtcaaattgatcatctctgttatttttttaatgtctaatattcttgatatgattttaaccgtttgattg 14429918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 335
Target Start/End: Complemental strand, 15746882 - 15746802
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 335  Q
    |||||| || ||||||||||||||| |||||   | ||| ||||||||||| |||| | ||||||||||  ||||||||||    
T  15746882 cttaataggtcatttggtcccctaattaatttccaattttcattttggtcccataagtaataaaactcatgttttggtccc 15746802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 424
Target Start/End: Original strand, 33941431 - 33941483
Alignment:
Q  372 gttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgca 424  Q
    |||||||||||||||| ||| |||||| ||||||| |||  ||||||||||||    
T  33941431 gttagttttttaatgtctaacatttttaatatgattttaaccgtttgattgca 33941483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 335
Target Start/End: Original strand, 48527534 - 48527614
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 335  Q
    ||||||||||  ||||||||||||| |||||    |||||||||||||||| |||| |  ||||| | |||||||||||||    
T  48527534 cttaattggatttttggtcccctaagtaatttgttgtttacattttggtcccataactcgtaaaattaacattttggtccc 48527614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 404
Target Start/End: Complemental strand, 50679827 - 50679791
Alignment:
Q  368 ctccgttagttttttaatgtttaaaatttttgatatg 404  Q
    |||||||||||||||||||| |||| |||||||||||    
T  50679827 ctccgttagttttttaatgtctaaattttttgatatg 50679791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 181; Significance: 1e-97; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 255 - 487
Target Start/End: Original strand, 28610022 - 28610254
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  28610022 cttaattggacatttggtcacctaaataattatgagtttacattttggtcccataaattgtaaaattcacattttggtccccttggttttgctccgtcag 28610121  T
Q  355 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagccatcgac 454  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||| ||| |    
T  28610122 tcaaattgatcccatccgttagttttttaatgtttaaaatttttgatatgatattagccgtttgattgcatgttcattatacctatagtgagccgtcggc 28610221  T
Q  455 acctaatttttccagcaccatcatcttctctct 487  Q
    |||||||||||||||||| |||||||| |||||    
T  28610222 acctaatttttccagcactatcatcttatctct 28610254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 255 - 465
Target Start/End: Original strand, 4919827 - 4920037
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    |||||||||||||||||||| |||||||||||||  |||||| |||||||| |||||||||||||  |||||||||||||| ||||||||||||||||||    
T  4919827 cttaattggacatttggtcctctaaataattatgcatttacaatttggtcccataaattataaaatccacattttggtccccttggttttgctccgtcag 4919926  T
Q  355 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagccatcgac 454  Q
    ||||||||||||||||| ||||||||||||  | |||| ||||||||||||| |||  ||||||||||||| ||||||||||||||||||| |||||  |    
T  4919927 tcaaattgatcccctccattagttttttaacatctaaattttttgatatgattttaaccgtttgattgcatgtccattatacctatagtgaaccatcagc 4920026  T
Q  455 acctaattttt 465  Q
    | |||||||||    
T  4920027 atctaattttt 4920037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 294 - 465
Target Start/End: Original strand, 45699568 - 45699739
Alignment:
Q  294 acattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaa 393  Q
    |||||||||| | ||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| | ||||     
T  45699568 acattttggttccataaattgtaaaactcacattttagtccctttggttttgctccgtcagtcaaattgaccccctccattagttttttaatatctaaat 45699667  T
Q  394 tttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagccatcgacacctaattttt 465  Q
    ||||||||||||| |||   |||||||||||| ||||| ||||||||||||| || || ||| |||||||||    
T  45699668 tttttgatatgattttaactgtttgattgcatgtccatcatacctatagtgaaccgtcaacatctaattttt 45699739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 269 - 465
Target Start/End: Original strand, 19397544 - 19397741
Alignment:
Q  269 tggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcagtcaaattgatcccc 368  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||| ||||||| |||||||||||||  | |||||||||||| ||||| |  | ||||     
T  19397544 tggtcccctaaataattaccagtttacattttggtcccataaattttaaaactaacattttggtccctctcgttttgctccgttagtcataaaggtccct 19397643  T
Q  369 tccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacct-atagtgagccatcgacacctaattttt 465  Q
    ||||||| ||||||||||| ||||| ||||||||| || |||  | || |||||||| |||||| ||  | ||||||| |  ||||||||||||||||    
T  19397644 tccgttatttttttaatgtctaaaacttttgatataattttaaccattggattgcatgtccattgtaattaatagtgaactgtcgacacctaattttt 19397741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 255 - 355
Target Start/End: Complemental strand, 4921174 - 4921074
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||| |||| ||||||| ||||||||||||||||||||  |||||||||||| |||||    
T  4921174 cttaattggacatttggtcctctaaataattatgcgtttacattttagtcccataaattgtaaaactcacattttggtcctcttggttttgctctgtcag 4921075  T
Q  355 t 355  Q
    |    
T  4921074 t 4921074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 255 - 359
Target Start/End: Complemental strand, 28611368 - 28611264
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    |||||||||| ||||||||| ||||||||||||| |||||||||||||||| ||||||| ||||| ||| ||||||||||  ||||||||||||||||||    
T  28611368 cttaattggatatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaattcatattttggtccttttggttttgctccgtcag 28611269  T
Q  355 tcaaa 359  Q
    |||||    
T  28611268 tcaaa 28611264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 256 - 367
Target Start/End: Complemental strand, 8321358 - 8321247
Alignment:
Q  256 ttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcagt 355  Q
    ||||||||||||||| ||| ||||||||||||| |||||||||||||||| ||||||| ||||||  ||||||| ||||| ||  |||||||||||| ||    
T  8321358 ttaattggacatttgatcctctaaataattatgcgtttacattttggtcccataaattttaaaaccaacattttagtccctttaattttgctccgtcggt 8321259  T
Q  356 caaattgatccc 367  Q
    ||||||||||||    
T  8321258 caaattgatccc 8321247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 253 - 357
Target Start/End: Complemental strand, 19398918 - 19398814
Alignment:
Q  253 gacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtc 352  Q
    ||||||||||| | |||||| |||||||||||||   |||||||||||||||| ||||||| ||||||  |||||||||||||  | ||||||||||||     
T  19398918 gacttaattggtcttttggttccctaaataattaccggtttacattttggtcccataaattgtaaaacctacattttggtccctcttgttttgctccgtt 19398819  T
Q  353 agtca 357  Q
    |||||    
T  19398818 agtca 19398814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 348 - 406
Target Start/End: Original strand, 1147842 - 1147900
Alignment:
Q  348 ccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 406  Q
    |||| ||||||||||||||||||||||| ||||||||||| |||| |||||||||||||    
T  1147842 ccgttagtcaaattgatcccctccgttatttttttaatgtctaaactttttgatatgat 1147900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 337
Target Start/End: Original strand, 45699523 - 45699582
Alignment:
Q  278 aaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccat 337  Q
    ||||||||||| |||||||||||||||| ||||||| ||||| |||||||||||| ||||    
T  45699523 aaataattatgtgtttacattttggtcccataaattgtaaaattcacattttggttccat 45699582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 335
Target Start/End: Original strand, 2276281 - 2276361
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 335  Q
    |||||| || |||||||||||  |||||||| | ||||| |||||| ||||||||| | ||||||||||  ||||||||||    
T  2276281 cttaataggtcatttggtccctcaaataattttcagttttcattttagtcctataagtaataaaactcatgttttggtccc 2276361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 385
Target Start/End: Complemental strand, 28544981 - 28544941
Alignment:
Q  345 gctccgtcagtcaaattgatcccctccgttagttttttaat 385  Q
    |||||||||||||||||||||| || |||||||||||||||    
T  28544981 gctccgtcagtcaaattgatcctctacgttagttttttaat 28544941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 335
Target Start/End: Original strand, 34147136 - 34147216
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 335  Q
    |||||| || |||||||||||  |||||||| | ||||| ||||||||||| |||| | ||||||||||  ||||||||||    
T  34147136 cttaataggtcatttggtccctcaaataattttcagttttcattttggtcccataagtaataaaactcatgttttggtccc 34147216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 432
Target Start/End: Complemental strand, 3533631 - 3533568
Alignment:
Q  369 tccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccatt 432  Q
    ||||||||| |||||||||||||  ||||||||||||| | |  |||||||||||| |||||||    
T  3533631 tccgttagtattttaatgtttaagttttttgatatgatttcaaccgtttgattgcagatccatt 3533568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 403
Target Start/End: Complemental strand, 9474073 - 9474020
Alignment:
Q  350 gtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatat 403  Q
    |||||||||| || |||||||| |||  |||||||||||||| |||||||||||    
T  9474073 gtcagtcaaagtggtcccctccattaaatttttaatgtttaatatttttgatat 9474020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 34512825 - 34512882
Alignment:
Q  266 atttggtcccctaaataattatgagtttacattttggtcctataaattataaaactca 323  Q
    |||||||||||||| ||||||  ||||| ||||||||||| |||| | ||||||||||    
T  34512825 atttggtcccctaattaattaccagttttcattttggtcccataattaataaaactca 34512882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 425
Target Start/End: Original strand, 16289887 - 16289947
Alignment:
Q  365 cccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcat 425  Q
    ||||||| ||||||||||||||| |||||||||| || |||| ||| || |||||| ||||    
T  16289887 cccctccattagttttttaatgtctaaaattttttatttgattttactcatttgatcgcat 16289947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 335
Target Start/End: Complemental strand, 34148476 - 34148396
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 335  Q
    |||||| || |||||||||||  |||||||| | ||||| |||||| || | |||||| ||||||||||  ||||||||||    
T  34148476 cttaataggtcatttggtccctcaaataattttcagttttcattttagttccataaataataaaactcatgttttggtccc 34148396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 173; Significance: 8e-93; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 255 - 487
Target Start/End: Original strand, 11796569 - 11796800
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||| ||||||||||||| ||||    
T  11796569 cttaattggacatttggtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcatattttggtccc-ttggttttgctccctcag 11796667  T
Q  355 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgagccatcgac 454  Q
    ||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||| |    
T  11796668 tcaaattgatcccatccgctagttttttaatgtttaaaacttttgatatgatattagccgtttgattgcatgtccattatacctatagtgagccgtcggc 11796767  T
Q  455 acctaatttttccagcaccatcatcttctctct 487  Q
    | |||||||||||||||| ||||||||||||||    
T  11796768 atctaatttttccagcactatcatcttctctct 11796800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 246 - 359
Target Start/End: Original strand, 23325903 - 23326016
Alignment:
Q  246 ttttattgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttg 345  Q
    |||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || ||||||||||| ||  ||||  |||||||||    
T  23325903 tttttttggcttaattggacatttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaactcacagttgagtcctcttggttttg 23326002  T
Q  346 ctccgtcagtcaaa 359  Q
     |||||||||||||    
T  23326003 gtccgtcagtcaaa 23326016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 255 - 359
Target Start/End: Complemental strand, 23334083 - 23333979
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || ||||||| ||| ||  ||||  ||||||||| ||||||||    
T  23334083 cttaattggacatttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaactaacagttgagtcctcttggttttggtccgtcag 23333984  T
Q  355 tcaaa 359  Q
    |||||    
T  23333983 tcaaa 23333979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 256 - 465
Target Start/End: Complemental strand, 10737053 - 10736843
Alignment:
Q  256 ttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcagt 355  Q
    |||||||||| ||||||||||||| |||||    |||| ||||||||||| |||| |  |||||   |||||||||||||  | |||||||||||| | |    
T  10737053 ttaattggacttttggtcccctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaat 10736954  T
Q  356 caaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacct-atagtgagccatcgac 454  Q
    ||| ||| ||||||||||||  |||||||||| ||||||||||||| |||| |||  | |||||||| || |||||| || || ||||||| || || ||    
T  10736953 caatttggtcccctccgttaactttttaatgtctaaaatttttgatttgattttaaccatttgattgaatgtccattgtatctaatagtgaaccgtcaac 10736854  T
Q  455 acctaattttt 465  Q
    || ||||||||    
T  10736853 acttaattttt 10736843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 255 - 359
Target Start/End: Complemental strand, 11797649 - 11797545
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |  |||||   |||||||||||||  | ||||| |||||| ||    
T  11797649 cttaattggacatttggtcccctaaataattatgagtttacattttggtctcataactcgtaaaatcaacattttggtccctcttgtttttctccgttag 11797550  T
Q  355 tcaaa 359  Q
    |||||    
T  11797549 tcaaa 11797545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 265 - 403
Target Start/End: Complemental strand, 10978385 - 10978247
Alignment:
Q  265 catttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgc-tccgtcagtcaaattga 363  Q
    ||||||||||||||| |||||   | ||| |||||||||||||||||| ||||||| ||| ||| |||||| |   || | | ||||||||||||| |||    
T  10978385 catttggtcccctaattaatttccaattttcattttggtcctataaataataaaacccacgtttcggtccc-tcaattatacgtccgtcagtcaaagtga 10978287  T
Q  364 tcccctccgttagttttttaatgtttaaaatttttgatat 403  Q
    ||||||||||||| |||||||||||||| |||||||||||    
T  10978286 tcccctccgttagatttttaatgtttaatatttttgatat 10978247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 341 - 425
Target Start/End: Original strand, 9219262 - 9219346
Alignment:
Q  341 ttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcat 425  Q
    ||||||||| | |||||| |||||||||||||||||||||||||||| |||||||||| || |||| |||  |||||||||||||    
T  9219262 ttttgctccattagtcaatttgatcccctccgttagttttttaatgtctaaaattttttatttgattttaaccgtttgattgcat 9219346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 368 - 466
Target Start/End: Complemental strand, 8188206 - 8188107
Alignment:
Q  368 ctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacct-atagtgagccatcgacacctaatttttc 466  Q
    |||||||||||||||||||| |||||||| ||||||||| |||  | ||||||||||| |||||||||  | || |||| ||||| ||||||||||||||    
T  8188206 ctccgttagttttttaatgtctaaaatttctgatatgattttaaccatttgattgcatgtccattatatttaatggtgaaccatcaacacctaatttttc 8188107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 364 - 406
Target Start/End: Original strand, 1273195 - 1273237
Alignment:
Q  364 tcccctccgttagttttttaatgtttaaaatttttgatatgat 406  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  1273195 tcccctccgttagttttttaatgtttaatatttttgatatgat 1273237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 326 - 432
Target Start/End: Original strand, 4124828 - 4124934
Alignment:
Q  326 ttttggtcccattggttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcat 425  Q
    |||||||||| || |||||||||||| ||| || ||| |||||| | |||||| |||||||||||||| ||||||| | || |||  | |||||||| ||    
T  4124828 ttttggtcccttttgttttgctccgttagttaatttggtccccttcattagttgtttaatgtttaaaaattttgatttaattttaaccatttgattgtat 4124927  T
Q  426 atccatt 432  Q
    |||||||    
T  4124928 atccatt 4124934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 289 - 359
Target Start/End: Complemental strand, 13520864 - 13520794
Alignment:
Q  289 agtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcagtcaaa 359  Q
    |||||||| ||| || | |||||||||||||| |||||||||||||  ||||||||||||||| |||||||    
T  13520864 agtttacactttagttccataaattataaaacccacattttggtcctcttggttttgctccgttagtcaaa 13520794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 359
Target Start/End: Complemental strand, 41144634 - 41144530
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    ||||||||||  ||||||||||||| |||||    |||| ||||||||||| ||||||| |||||   || |||||||||| ||| ||||||||||| ||    
T  41144634 cttaattggatttttggtcccctaattaatttgttgttttcattttggtcccataaattctaaaatcaacgttttggtccctttgattttgctccgttag 41144535  T
Q  355 tcaaa 359  Q
    |||||    
T  41144534 tcaaa 41144530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 323 - 425
Target Start/End: Original strand, 13519540 - 13519647
Alignment:
Q  323 acattttggtcccattggttttgctccgtcagtcaaattgatcccctccg-----ttagttttttaatgtttaaaatttttgatatgatattagtcgttt 417  Q
    ||||||||||||   | ||||||||||||  |||||||||||||| ||||     ||||||||||||||| ||||| |||||||||||| |||  | |||    
T  13519540 acattttggtccttcttgttttgctccgtttgtcaaattgatcccttccgttagtttagttttttaatgtctaaaacttttgatatgattttaaccattt 13519639  T
Q  418 gattgcat 425  Q
    ||||||||    
T  13519640 gattgcat 13519647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 434
Target Start/End: Original strand, 5975870 - 5975932
Alignment:
Q  372 gttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattat 434  Q
    |||||||||||||||| |||| ||||||||||||| |||  | ||||||||||| ||||||||    
T  5975870 gttagttttttaatgtctaaagtttttgatatgattttaaccatttgattgcatgtccattat 5975932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 406
Target Start/End: Complemental strand, 15857624 - 15857586
Alignment:
Q  368 ctccgttagttttttaatgtttaaaatttttgatatgat 406  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  15857624 ctccgttagttttttaatgtttaatatttttgatatgat 15857586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 360
Target Start/End: Original strand, 8521252 - 8521360
Alignment:
Q  252 tgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgt 351  Q
    ||||||||| || ||||||||||| ||| |||||   ||||| ||||||||||| |||| | ||||||||||  ||||||||||    ||||  ||||||    
T  8521252 tgacttaataggtcatttggtcccttaattaatttcaagttttcattttggtcccataactaataaaactcatgttttggtccctcacgtttgtctccgt 8521351  T
Q  352 cagtcaaat 360  Q
    |||||||||    
T  8521352 cagtcaaat 8521360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 359
Target Start/End: Original strand, 10735763 - 10735867
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    ||||||||||| ||||||||||||| ||||||   |||| ||||||||||| |||| |  |||||   || ||||||||||  | |||||||||||| ||    
T  10735763 cttaattggacttttggtcccctaagtaattacttgttttcattttggtcccataactcgtaaaatcaacgttttggtccctcttgttttgctccgttag 10735862  T
Q  355 tcaaa 359  Q
    |||||    
T  10735863 tcaaa 10735867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 404
Target Start/End: Complemental strand, 18695653 - 18695617
Alignment:
Q  368 ctccgttagttttttaatgtttaaaatttttgatatg 404  Q
    |||||||||||||||||||| ||||||||||||||||    
T  18695653 ctccgttagttttttaatgtctaaaatttttgatatg 18695617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 403
Target Start/End: Complemental strand, 5384352 - 5384317
Alignment:
Q  368 ctccgttagttttttaatgtttaaaatttttgatat 403  Q
    |||||||||||||||||||||||| |||||||||||    
T  5384352 ctccgttagttttttaatgtttaatatttttgatat 5384317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 406
Target Start/End: Complemental strand, 22812397 - 22812354
Alignment:
Q  364 tcccctccgttagtttttt-aatgtttaaaatttttgatatgat 406  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||    
T  22812397 tcccctccgttagtttttttaatgtttaatatttttgatatgat 22812354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 335
Target Start/End: Original strand, 32757826 - 32757905
Alignment:
Q  256 ttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 335  Q
    ||||| || |||||||||||  ||||||||   ||||| ||||||||||| |||||| ||||||||||  ||||||||||    
T  32757826 ttaataggtcatttggtccctcaaataatttccagttttcattttggtcccataaataataaaactcatgttttggtccc 32757905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 405
Target Start/End: Complemental strand, 224596 - 224559
Alignment:
Q  368 ctccgttagttttttaatgtttaaaatttttgatatga 405  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  224596 ctccgttagttttttaatgtctaaattttttgatatga 224559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 432
Target Start/End: Original strand, 35047495 - 35047595
Alignment:
Q  331 gtcccattggttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatcca 430  Q
    ||||| || |||||||||||| |||||||  | |||  ||| |||||||||||||| ||||| |||||||||| || ||| || || |||||||| ||||    
T  35047495 gtcccttttgttttgctccgttagtcaaaaaggtcca-tccattagttttttaatgcttaaattttttgatataattttaatcattcgattgcatgtcca 35047593  T
Q  431 tt 432  Q
    ||    
T  35047594 tt 35047595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 8523862 - 8523794
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactca 323  Q
    |||||| || ||||||||||||||| |||||   ||||| ||||||||||| |||| | ||||||||||    
T  8523862 cttaataggtcatttggtcccctaattaatttcaagttttcattttggtcccataactaataaaactca 8523794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 404
Target Start/End: Complemental strand, 21389149 - 21389113
Alignment:
Q  368 ctccgttagttttttaatgtttaaaatttttgatatg 404  Q
    |||||||||||||||||||| |||||||||| |||||    
T  21389149 ctccgttagttttttaatgtctaaaattttttatatg 21389113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 335
Target Start/End: Complemental strand, 32759164 - 32759084
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 335  Q
    |||||| || |||||||||||  |||||||| | ||||| |||||| || | |||||| ||||||||||  ||||||||||    
T  32759164 cttaataggtcatttggtccctcaaataattttcagttttcattttagttccataaataataaaactcatgttttggtccc 32759084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 255 - 465
Target Start/End: Original strand, 6895 - 7105
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||| ||||||  |||||||||| || |||||||||||||||| |    
T  6895 cttaattggacatttggtcctctaaataattatgtgtttacattttggtcccataaattgtaaaaccaacattttggttcctttggttttgctccgtcgg 6994  T
Q  355 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacct-atagtgagccatcga 453  Q
    |||||||||| |||||||||||||||| ||| | |||| |||||||||| || |||  ||||||||||||| |||||||||  | ||||||| || || |    
T  6995 tcaaattgat-ccctccgttagtttttcaatatctaaattttttgatataattttaaccgtttgattgcatgtccattatatttaatagtgaaccgtcaa 7093  T
Q  454 cacctaattttt 465  Q
    ||||||||||||    
T  7094 cacctaattttt 7105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 367
Target Start/End: Complemental strand, 8306 - 8194
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    |||||||| || ||||||||||||| ||||| |  |||||||||||||||| |||| |  |||||   |||||||||||||  | ||||| |||||| ||    
T  8306 cttaattgaacttttggtcccctaagtaattctttgtttacattttggtcccataactcgtaaaatcaacattttggtccctctcgttttactccgttag 8207  T
Q  355 tcaaattgatccc 367  Q
    |||| ||||||||    
T  8206 tcaatttgatccc 8194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 5e-51; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 255 - 445
Target Start/End: Original strand, 9853567 - 9853757
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    |||||||| ||||| | |||  |||||||||||  ||||| |||||||||| ||||||| ||||||| | ||||||||| | | ||||||||||||||||    
T  9853567 cttaattgaacattagctcctttaaataattatatgtttatattttggtcccataaattgtaaaactaatattttggtctcctgggttttgctccgtcag 9853666  T
Q  355 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtga 445  Q
    ||||||||||||||||||||||||||||||| | |||| |||||||||| || |||  |||||||||||||||||||||||||||||||||    
T  9853667 tcaaattgatcccctccgttagttttttaatatctaaattttttgatataattttaaccgtttgattgcatatccattatacctatagtga 9853757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 273 - 465
Target Start/End: Original strand, 42793717 - 42793910
Alignment:
Q  273 cccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcagtcaaattgatcccctccg 372  Q
    ||||||||||||||  |||||| |||||||||| ||||||| ||||| | |||||||||||||  | |||||||||||| |||||||  | ||||||| |    
T  42793717 cccctaaataattaccagtttatattttggtcccataaattgtaaaattaacattttggtccctcttgttttgctccgttagtcaaaaaggtcccctctg 42793816  T
Q  373 ttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacct-atagtgagccatcgacacctaattttt 465  Q
    ||| ||||||||||| ||||| |||||||||||| |||  | || |||||||| |||||| ||  | ||||||| |||||||||||||||||||    
T  42793817 ttaattttttaatgtctaaaacttttgatatgattttaaccattggattgcatgtccattgtaattaatagtgaaccatcgacacctaattttt 42793910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 255 - 359
Target Start/End: Complemental strand, 9854995 - 9854891
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||| |||||  |||||||||||||  ||| ||||||||||||||    
T  9854995 cttaattggacatttggtcctctaaataattatgtgtttacattttggtcccataaattgtaaaatccacattttggtcctcttgattttgctccgtcag 9854896  T
Q  355 tcaaa 359  Q
    |||||    
T  9854895 tcaaa 9854891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 45298962 - 45298855
Alignment:
Q  99 gagtattgttgtccgtccacaaacaagccgtgatagttaggcatacttgca------acaccttaagtttcacaattgtgggaatataatgtgttgaatg 192  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||      ||||||||||||| | ||||||||||||||||||||||||||     
T  45298962 gagtattgttgtccgtccacaaacaagccgtgatagttagacatacttgcacctttgacaccttaagttttataattgtgggaatataatgtgttgaata 45298863  T
Q  193 agtgtatg 200  Q
    ||||||||    
T  45298862 agtgtatg 45298855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 269 - 405
Target Start/End: Original strand, 38697170 - 38697306
Alignment:
Q  269 tggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcagtcaaattgatcccc 368  Q
    ||||||| ||||||||||| | ||||||||||||||  ||||||||||||||  ||||||||||||| ||  ||||||||| |||||||||  | |||||    
T  38697170 tggtcccttaaataattatcaatttacattttggtctcataaattataaaaccaacattttggtcccttttattttgctccctcagtcaaaaaggtcccc 38697269  T
Q  369 tccgttagttttttaatgtttaaaatttttgatatga 405  Q
    ||||||| | ||||||||| ||||| |||||||||||    
T  38697270 tccgttactattttaatgtctaaaacttttgatatga 38697306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 341 - 465
Target Start/End: Original strand, 24191463 - 24191587
Alignment:
Q  341 ttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctat 440  Q
    |||||||| || | |||||||||||| |||||||||||| ||||||| |||| |||||||| |||| |||  ||||||||||||| |||||| || ||||    
T  24191463 ttttgctctgttactcaaattgatccactccgttagtttgttaatgtctaaattttttgatttgattttaaccgtttgattgcatgtccattgtatctat 24191562  T
Q  441 agtgagccatcgacacctaattttt 465  Q
    ||||| || ||  ||||||||||||    
T  24191563 agtgaaccgtcagcacctaattttt 24191587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 341 - 432
Target Start/End: Complemental strand, 43203310 - 43203219
Alignment:
Q  341 ttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccatt 432  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||| |||| |||||||| | || |||  | ||||||||||| ||||||    
T  43203310 ttttgctccgtcagtcaatttggtcccctccgttagttttttaatgtctaaattttttgatttaattttaaacatttgattgcatgtccatt 43203219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 347 - 465
Target Start/End: Complemental strand, 45396042 - 45395924
Alignment:
Q  347 tccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattatacctatagtgag 446  Q
    |||||||||||||||| ||| |||||||||||| ||||||| | | |||||| ||| ||| |||  ||||||||||||| |||||| ||  |||||| |     
T  45396042 tccgtcagtcaaattggtccactccgttagtttcttaatgtctgatattttttatacgattttaaccgtttgattgcatgtccattgtatatatagtaaa 45395943  T
Q  447 ccatcgacacctaattttt 465  Q
    |||||| ||||||||||||    
T  45395942 ccatcggcacctaattttt 45395924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 432
Target Start/End: Complemental strand, 22621136 - 22621076
Alignment:
Q  372 gttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccatt 432  Q
    |||||||||||||||| ||||||| |||||||||| ||| || ||||||||||| ||||||    
T  22621136 gttagttttttaatgtataaaattcttgatatgattttaatcatttgattgcatgtccatt 22621076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 323 - 406
Target Start/End: Original strand, 31844436 - 31844519
Alignment:
Q  323 acattttggtcccattggttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 406  Q
    |||||||||||||  | |||||||||||| |||||| ||| ||||||||||| ||  |||||| | ||||||||||||| ||||    
T  31844436 acattttggtccctcttgttttgctccgttagtcaatttggtcccctccgtttgtcctttaatttctaaaatttttgatttgat 31844519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 335
Target Start/End: Original strand, 38696299 - 38696388
Alignment:
Q  246 ttttattgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 335  Q
    |||| ||| |||||| || ||||||||||||||| ||||| | ||||| ||||||||||  |||| | ||||||||||  ||||||||||    
T  38696299 ttttcttggcttaataggccatttggtcccctaattaattttaagttttcattttggtctcataactaataaaactcatgttttggtccc 38696388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 310
Target Start/End: Original strand, 28291295 - 28291350
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataa 310  Q
    ||||||||||  ||||||||||||| ||||||| ||||| ||||||||||| ||||    
T  28291295 cttaattggatttttggtcccctaagtaattatcagttttcattttggtcccataa 28291350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 432
Target Start/End: Complemental strand, 39516510 - 39516439
Alignment:
Q  361 tgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccatt 432  Q
    |||||| |||||||||||||||||||| |||| ||||| || |||| |||  | ||||||||||| ||||||    
T  39516510 tgatcctctccgttagttttttaatgtctaaattttttcatgtgattttaaccatttgattgcatgtccatt 39516439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 406
Target Start/End: Original strand, 16362529 - 16362567
Alignment:
Q  368 ctccgttagttttttaatgtttaaaatttttgatatgat 406  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  16362529 ctccgttagttttttaatgtctaatatttttgatatgat 16362567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 335
Target Start/End: Complemental strand, 28291486 - 28291401
Alignment:
Q  250 attgacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 335  Q
    |||| ||||||||||  ||| ||||||||||||||||| ||||| || |||||||| |||| |  ||||| | |||||| ||||||    
T  28291486 attggcttaattggatttttagtcccctaaataattatcagttttcactttggtcccataactcgtaaaattaacatttcggtccc 28291401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 406
Target Start/End: Original strand, 34616245 - 34616282
Alignment:
Q  369 tccgttagttttttaatgtttaaaatttttgatatgat 406  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  34616245 tccgttagttttttaatgtttaatatttttaatatgat 34616282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 406
Target Start/End: Complemental strand, 36757232 - 36757188
Alignment:
Q  362 gatcccctccgttagttttttaatgtttaaaatttttgatatgat 406  Q
    ||||| |||| ||||||||||||||| |||| |||||||||||||    
T  36757232 gatcctctccattagttttttaatgtctaaattttttgatatgat 36757188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 359
Target Start/End: Original strand, 38697880 - 38697972
Alignment:
Q  267 tttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcagtcaaa 359  Q
    ||||||||||||| ||||| |   ||||||||||||| | |||| || |||||   |||||||||||||  | |||||||||||| |||||||    
T  38697880 tttggtcccctaagtaattttctatttacattttggttccataacttgtaaaatcaacattttggtccctcttgttttgctccgttagtcaaa 38697972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 255 - 359
Target Start/End: Original strand, 11722786 - 11722890
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcag 354  Q
    |||||||||||||||| ||| ||||||||||||| |||||||||||| ||| ||||||| ||||||||||||||||||||  ||||||||||||||||||    
T  11722786 cttaattggacatttgatcctctaaataattatgtgtttacattttgatcccataaattgtaaaactcacattttggtcctcttggttttgctccgtcag 11722885  T
Q  355 tcaaa 359  Q
    |||||    
T  11722886 tcaaa 11722890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 285 - 359
Target Start/End: Complemental strand, 21777570 - 21777496
Alignment:
Q  285 tatgagtttacattttggtcctataaattataaaactcacattttggtcccattggttttgctccgtcagtcaaa 359  Q
    ||||||||||||||||||||| |||| || ||||||||||| ||  ||||  ||||||||| |||||||||||||    
T  21777570 tatgagtttacattttggtcccataagttgtaaaactcacagttgagtcctcttggttttggtccgtcagtcaaa 21777496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 138223 - 138176
Alignment:
Q  354 gtcaaattgatcccctccgttagttttttaatgtttaaaatttttgat 401  Q
    |||||||||||||||||||||| ||||||||||| |||| ||||||||    
T  138223 gtcaaattgatcccctccgttatttttttaatgtctaaactttttgat 138176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 146244 - 146197
Alignment:
Q  354 gtcaaattgatcccctccgttagttttttaatgtttaaaatttttgat 401  Q
    |||||||||||||||||||||| ||||||||||| |||| ||||||||    
T  146244 gtcaaattgatcccctccgttatttttttaatgtctaaactttttgat 146197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 465
Target Start/End: Complemental strand, 18242317 - 18242215
Alignment:
Q  364 tcccctccgttagttttttaatgtttaaaatttttgatatgatattagtcgtttgattgcatatccattata-cctatagtgagccatcgacacctaatt 462  Q
    |||||||||||||||||||||||| | |||||||| || | || |||  | ||||||||||| |||||| ||   |||||||| |||||  |||||||||    
T  18242317 tcccctccgttagttttttaatgtcttaaatttttaatttaattttaaccatttgattgcatgtccattgtattttatagtgaaccatcatcacctaatt 18242218  T
Q  463 ttt 465  Q
    |||    
T  18242217 ttt 18242215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 335
Target Start/End: Complemental strand, 128707 - 128627
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 335  Q
    |||||| || ||||||||||| ||| ||||| | ||||| |||||||||||||| | | ||||||||||  ||||||||||    
T  128707 cttaataggtcatttggtcccttaattaattttaagttttcattttggtcctattactaataaaactcatgttttggtccc 128627  T

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Target: scaffold0011; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 335
Target Start/End: Original strand, 127433 - 127513
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 335  Q
    |||||| || ||||||||||||||| |||||   ||||| | ||||||||| |||| | ||||||||||  ||||||||||    
T  127433 cttaataggtcatttggtcccctaattaatttcaagttttcgttttggtcccataactaataaaactcatgttttggtccc 127513  T

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Target: scaffold2071 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 335
Target Start/End: Complemental strand, 797 - 717
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 335  Q
    |||||| || |||||||||| |||| |||||   ||||| ||||||||||| |||| | ||||||||||  ||||||||||    
T  797 cttaataggtcatttggtcctctaattaatttccagttttcattttggtcccataactaataaaactcatgttttggtccc 717  T

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Target: scaffold1251 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 335
Target Start/End: Complemental strand, 1201 - 1121
Alignment:
Q  255 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattataaaactcacattttggtccc 335  Q
    |||||| || |||||||||||  ||||||||   ||||| ||||||||||| |||| | ||||||||||  ||||||||||    
T  1201 cttaataggtcatttggtccctcaaataatttccagttttcattttggtcccataagtaataaaactcatgttttggtccc 1121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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