View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0924_high_12 (Length: 231)
Name: NF0924_high_12
Description: NF0924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0924_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 1172331 - 1172449
Alignment:
| Q |
106 |
tcttataggaagagatagttcatgtttgtgatcattccgactttccatgaacccatcgttttggttcaaagcttgagcacttgagatcatcaataggaag |
205 |
Q |
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| T |
1172331 |
tcttatagtaagagatagttcatgtttgtgatcattccgactttccacgaacccatcgttttggttcaaagcttgagcacttgagatcatcaataggaag |
1172430 |
T |
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| Q |
206 |
agtacagaaagtattatct |
224 |
Q |
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| T |
1172431 |
agtacagaaagtattatct |
1172449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 106 - 221
Target Start/End: Original strand, 1164973 - 1165088
Alignment:
| Q |
106 |
tcttataggaagagatagttcatgtttgtgatcattccgactttccatgaacccatcgttttggttcaaagcttgagcacttgagatcatcaataggaag |
205 |
Q |
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|||||||| | | ||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||| ||| |
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| T |
1164973 |
tcttatagtatgggatagttcatgtttgtgatcattccgactttccgcgaacccatcatggtggttcaaagcttgagcacttgagatcatcaatatgaac |
1165072 |
T |
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| Q |
206 |
agtacagaaagtatta |
221 |
Q |
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| T |
1165073 |
agtacagaaagtatta |
1165088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 1160319 - 1160387
Alignment:
| Q |
106 |
tcttataggaagagatagttcatgtttgtgatcattccgactttccatgaacccatcgttttggttcaa |
174 |
Q |
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|||||||| || |||||||||||||||||| |||| ||||||||| |||||||| || |||||||| |
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| T |
1160319 |
tcttatagtaacagatagttcatgtttgtgtgcattttgactttccacaaacccatctttgtggttcaa |
1160387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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