View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0924_high_2 (Length: 445)
Name: NF0924_high_2
Description: NF0924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0924_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 47 - 434
Target Start/End: Complemental strand, 9897152 - 9896765
Alignment:
| Q |
47 |
cactccacgttctcatcagcctttggcgttagaggatcaccttgaaacactcaacgcatacttgcaaaatgatttgttagttaccaggtaaccaagatag |
146 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |
|
|
| T |
9897152 |
cactccacgttctcgtcagcctttggcgttagaggatcaccttgaaacactcaacgcatacttgcaaaatgatttgttggttgccatgtaaccaagatag |
9897053 |
T |
|
| Q |
147 |
aaaacatgtcagatttaagaatcacatgaacccaattacaaaacccagggttgaaaccaaaagttgtcaaaacactaagaagaaaattccaatcaacggt |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9897052 |
aaaacatgtcagatttaagaatcacatgaacccaattacaaaacccagggttgaaaccaaaagttgtcaaaacactaagaagaaaattccaatcaagggt |
9896953 |
T |
|
| Q |
247 |
gtcaaaaactttatggatgtcaagtttgagagcaatattactatcatgtggtttagattagaatctagcatattaatagcttctgatgcaatacaaatgc |
346 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9896952 |
gtcaaaaacgttatggatgtcaagtttgagagcaatattactatcatgtggtttagattagaatctagcatattaatagcttctgatgcaatacaaatgc |
9896853 |
T |
|
| Q |
347 |
attcaaatatgtttctatatttaactaaccctctaatcatttttggaacaattaaggcaagctgatcaacaagaaccctttaagaatt |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9896852 |
attcaaatatgtttctatatttaactaaccctctaatcatttttggaacaattaaggcaagctgatcaacaagaaccctttaagaatt |
9896765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 414 times since January 2019
Visitors: 6703