View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0924_low_1 (Length: 791)
Name: NF0924_low_1
Description: NF0924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0924_low_1 |
 | |
|
| [»] chr6 (9 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 396 - 791
Target Start/End: Complemental strand, 2063460 - 2063069
Alignment:
| Q |
396 |
cacaaacaaaacacccaatatactaaattgttttttgcagaaatgtaacctagttgccattattttttggtaacgatgttgtcgtatgatcaacaatacg |
495 |
Q |
| |
|
||||| ||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||| |||||| |||| | | ||||||||||| |||| |
|
|
| T |
2063460 |
cacaagcaaaacatccaatatgctaaattgttttttgcagaaatgtaacatagttgccattagtttttgacaacggcgccaccatatgatcaacagtacg |
2063361 |
T |
|
| Q |
496 |
catcttcttcaacttcaccatctacaaaaatataaagatccattaaattttatgttttcctaccaaatgcatatataaaactaaaatttaacgcatgcta |
595 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2063360 |
catcttcttcaacttcaccatctacaaaaatataaagatccattaaattttattttttcctaccaaatgcatatatgaaactaaaatttaacgcatgcta |
2063261 |
T |
|
| Q |
596 |
aacaaaaggttcacaatatatctttcaaaaagttactaacagaaaatatatcaattgaaatagaaaactaaacacaaaccaaagatgcttttcggtttca |
695 |
Q |
| |
|
|||||| ||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2063260 |
aacaaatcgtttacaatatatc-ttcaaaaagttactaaaagaaaatatatcaattgaaatagaaaactaaacacaaaccaaagctgcttttcggtttca |
2063162 |
T |
|
| Q |
696 |
aagtagttttagttgcaagaagtcattgcaattctcaaaggaaaccaaacatttgaaacatataggaaactaagaaaagtcttgacgtctaaccac |
791 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2063161 |
aggtagttttagttgc---aagtcattgcaattctcaaaggaaatcaaacatttgaaacatataggaaactaagaaaagtcttgacgtctaaccac |
2063069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 2063825 - 2063483
Alignment:
| Q |
1 |
ttagggtcaaaaacatcaaaacaccatcaatcatggtggtcatcaatcaaatagcaaatagttttgaaatgaaagtagattaattaacaatgctatttct |
100 |
Q |
| |
|
||||||| ||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2063825 |
ttagggtaaaaaacatcaaaacaccttaagtcatggtggtcatcaatcaaatagcaaatagttttgaaatgaaagtagattag----caatgctatttct |
2063730 |
T |
|
| Q |
101 |
tgcaactaatgtcatcctgaaaagcttcacgaataaagtttcaacaaaatgaagtagtgtctttcacgaaaaacacagcaagtattgcttgtatgtggtt |
200 |
Q |
| |
|
||||||||| ||||| |||| | ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2063729 |
cgcaactaatatcatctcgaaa-gtttcacgaataaagtttcaacaaa-tgaagtagtgtctttcacgaaaaacatagcaagtattgcttgtatgtggtt |
2063632 |
T |
|
| Q |
201 |
aaacgttttatagcaatcgtgagagtgccgtgaa-cgaaactcgttatatcaagcattatagaaagtagagacgcagaaaatagatattcacaaacatgc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||| |||| |||||||||| | ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2063631 |
aaacgttttatagcaatcgtgagagtgccgtgaaccaaaacttgttacatcaagcattttccaaagtagagtagcagaaaatagatattcacaaacatgc |
2063532 |
T |
|
| Q |
300 |
acataaaaatataacaatccaaacttcatacgagcagtatttgtttttt |
348 |
Q |
| |
|
|||||||| |||||||||||||| ||| ||| |||| |||||||||||| |
|
|
| T |
2063531 |
acataaaattataacaatccaaatttcttactagcaatatttgtttttt |
2063483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 381 - 777
Target Start/End: Complemental strand, 2055488 - 2055087
Alignment:
| Q |
381 |
tttgacatgcagtgtcacaaacaaaacacccaatatactaaattgttttttgcagaaatgtaacctag-ttgccattattttttggtaacgatgttgtcg |
479 |
Q |
| |
|
||||||||||| ||||| | ||||||||||||||| ||||||||||||| ||||||||||||| ||| ||||||||| |||||| |||| |||| |
|
|
| T |
2055488 |
tttgacatgcattgtcatatgcaaaacacccaatatgctaaattgtttttggcagaaatgtaacatagtttgccattagtttttgacaacggcactgtca |
2055389 |
T |
|
| Q |
480 |
tatgatcaacaatacgcatcttcttcaacttcaccatctac-aaaaatataaagatccattaaattttatgttttcctaccaaatgcatatataaaacta |
578 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||| |||||| |||| |||||||||||||||| || ||||||||||| || |||| ||| || |
|
|
| T |
2055388 |
tatgatcaacaatacgcatcttcttcaacttgaccctctacaaaaaatttaaaaatccattaaattttatattatcctaccaaatacagatatgaaatta |
2055289 |
T |
|
| Q |
579 |
aaatttaacgcatgctaaacaaaaggttcacaatatatctttcaaaaagtta-ctaacagaaaatatatcaattgaaatagaaaactaaacacaaaccaa |
677 |
Q |
| |
|
|||||| | ||||||||||| || |||| || ||| |||||||||| | | |||| ||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
2055288 |
aaatttgatgcatgctaaactaattgttcgcattatttctttcaaaacgccatctaaatgaaaatatatcaattgaaatagaaaaccaaacacaaagcaa |
2055189 |
T |
|
| Q |
678 |
agatgcttttcggtttcaaagtagttttagttgcaagaagtcattgcaattctca-----aaggaaaccaaacatttgaaacatataggaaactaagaaa |
772 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2055188 |
agatgcttttcggtttcaaagtagttttagttgc---aagtcattgcaattctcagtaattaggaaatcaaacatttgaaacatataggaaactaagaaa |
2055092 |
T |
|
| Q |
773 |
agtct |
777 |
Q |
| |
|
||||| |
|
|
| T |
2055091 |
agtct |
2055087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 2060062 - 2059734
Alignment:
| Q |
1 |
ttagggtcaaaaacatcaaaacaccatcaatcatggtggtcatcaatcaaatagcaaatagttttgaaatgaaagtagattaattaacaatgctatttct |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2060062 |
ttagggtcaaaaacatcaaaacacc-tcaatcatggtggtcatcaatcaaatagcaaatagttttgaaatgaaagtagattag----caatgctatttct |
2059968 |
T |
|
| Q |
101 |
tgcaactaatgtcatcctgaaaagcttcacgaataaagtttcaacaaaatgaagtagtgtctttcacgaaaaacacagcaagtattgcttgtatgtggtt |
200 |
Q |
| |
|
||||||||| ||||| |||| | ||| |||||||||||||||| || | |||| ||| |||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
2059967 |
cgcaactaatatcatctcgaaa-gtttcgcgaataaagtttcaaccaatt-aagttgtgcctttcacggaaaacaaagcaagtattgcttgtatgtggtt |
2059870 |
T |
|
| Q |
201 |
aaacgttttat-------agcaatcgtgagagtgccgtgaa-cgaaactcgttatatcaagcattatagaaagtagagacgcagaaaatagatattcaca |
292 |
Q |
| |
|
| | ||||||| ||| || ||||||||| ||||| | ||| ||| || ||||| |||||| |||||||| |||||||||||||||||||| |
|
|
| T |
2059869 |
acatgttttatacacttaagccattgtgagagtgttgtgaatcaaaattcgctacatcaaacattatccaaagtagaatagcagaaaatagatattcaca |
2059770 |
T |
|
| Q |
293 |
aacatgcacataaaaatataacaatccaaacttcat |
328 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2059769 |
aacatgcacataagaatataacaatccaaacttcat |
2059734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 381 - 599
Target Start/End: Complemental strand, 2059648 - 2059429
Alignment:
| Q |
381 |
tttgacatgcagtgtcacaaacaaaacacccaatatactaaattgttttttgcagaaatgtaacctagttgccatta-ttttttggtaacgatgttgtcg |
479 |
Q |
| |
|
||||||||| |||| | || ||||||| ||| || ||||||||||||| | |||||| |||| |||| |||||| ||||||| |||| | |||| |
|
|
| T |
2059648 |
tttgacatgtagtgacgcatgcaaaacatccatcatgctaaattgtttttggtagaaatctaacatagtcgccattcgttttttgacaacggcgctgtca |
2059549 |
T |
|
| Q |
480 |
tatgatcaacaatacgcatcttcttcaacttcaccatctacaaaaatataaagatccattaaattttatgttttcctaccaaatgcatatataaaactaa |
579 |
Q |
| |
|
| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
2059548 |
tgtgatcaacaatatgcatcttcttcaacttcgccatctacaaaaatataaagatccattaaattgtatgttttcctaccaaatgcatatatgaaactaa |
2059449 |
T |
|
| Q |
580 |
aatttaacgcatgctaaaca |
599 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
2059448 |
aatttaacacatgctaaaca |
2059429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 497 - 677
Target Start/End: Complemental strand, 2049269 - 2049091
Alignment:
| Q |
497 |
atcttcttcaacttcaccatctacaaaaatataaagatccattaaattttatgttttcctaccaaatgcatatataaaactaaaatttaacgcatgctaa |
596 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||| || ||| ||| | |||||| | ||| || || |
|
|
| T |
2049269 |
atcttcttcaacttgaccatctacaaaaatataaagatccattaaattttatgttccactatcaaatacagatacgaaaatgaaatttgaggcaagcaaa |
2049170 |
T |
|
| Q |
597 |
acaaaaggttcacaatatatctttcaaaaagttactaacagaaaatatatcaattgaaatagaaaactaaacacaaaccaa |
677 |
Q |
| |
|
||| | ||||||||||| |||||||||| ||| || ||||||||| || | ||||||||||||| ||||||||||||| |
|
|
| T |
2049169 |
acagattgttcacaatatttctttcaaaatcttatta--agaaaatatttccaatgaaatagaaaaccaaacacaaaccaa |
2049091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 660 - 789
Target Start/End: Complemental strand, 2059387 - 2059257
Alignment:
| Q |
660 |
aaactaaacacaaaccaaagatgcttttcggtttcaaagtagttttagttgcaagaagtcattgcaattctca-----aaggaaaccaaacatttgaaac |
754 |
Q |
| |
|
||||||||||||||||||| ||| |||| ||||||||||||||||||||||| ||||||||| ||||||| |||||| |||||||||||||| |
|
|
| T |
2059387 |
aaactaaacacaaaccaaatatgttttttggtttcaaagtagttttagttgc---aagtcattgtcattctcagtaattaggaaatcaaacatttgaaac |
2059291 |
T |
|
| Q |
755 |
atataggaaactaagaaaagtcttgacgtctaacc |
789 |
Q |
| |
|
||||| |||| ||||||||||||| | |||||||| |
|
|
| T |
2059290 |
atata-gaaattaagaaaagtcttaaggtctaacc |
2059257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 273 - 350
Target Start/End: Complemental strand, 2055643 - 2055569
Alignment:
| Q |
273 |
gcagaaaatagatattcacaaacatgcacataaaaatataacaatccaaacttcatacgagcagtatttgttttttaa |
350 |
Q |
| |
|
|||||||||| | ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
2055643 |
gcagaaaataaagattcacaaacaagcacataaaaatataacaatccaaacttcat---agcagtatttgatttttaa |
2055569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 497 - 551
Target Start/End: Complemental strand, 2042641 - 2042587
Alignment:
| Q |
497 |
atcttcttcaacttcaccatctacaaaaatataaagatccattaaattttatgtt |
551 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
2042641 |
atcttcttcaacttgaccatctaaaaaaatatgaagatccattaaattttatgtt |
2042587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 231 times since January 2019
Visitors: 6695