View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0924_low_10 (Length: 404)
Name: NF0924_low_10
Description: NF0924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0924_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 32 - 396
Target Start/End: Complemental strand, 29778372 - 29778016
Alignment:
| Q |
32 |
gacaattcaaattacacaattttaaagatctacgtgaagcaaagtcatttccaaaaagattgttacttataaattataatgcaccaaaagcaaaaggaaa |
131 |
Q |
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| T |
29778372 |
gacaattcaaattacagaattttaaagatctacgtgaagcaaagtcatttccaaaaagagtgttacttagaa-------tgcaacaaaaggaaa-ggaaa |
29778281 |
T |
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| Q |
132 |
caacaaatttccaaaagggtaagaaatcataccatcaaatcctgaatttggatggtaaagaaagaaattggtagcttcaaaaccaagaagaggaagcctt |
231 |
Q |
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| T |
29778280 |
caagaaatttccaaaagggtaagaaatcataccatcaaatcctgaatttggatggtaaagaaagaaattggtagcttcaaaaccaagaacaggaagcctt |
29778181 |
T |
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| Q |
232 |
ccttctcttgcataagatttaagagtaatatcaatgaccccagaaacaagctctttctcattcaccacaaaccttataggacctgaacttcccatgatgt |
331 |
Q |
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| T |
29778180 |
ccttgtcttgcataagatttaagagcagtatcaatgacccctgaaacaagctctttctcatttaccacaaaccttaaaggacccgaacttcccatgatgt |
29778081 |
T |
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| Q |
332 |
taatagttaccaagaacctattgattctacttgttttctggtctcccctattcttgttcatctca |
396 |
Q |
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| T |
29778080 |
taatagttaccaagaacctattgattctgcttgttttctggtctccactattcttgttcttctca |
29778016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 105 - 396
Target Start/End: Complemental strand, 29782379 - 29782088
Alignment:
| Q |
105 |
ttataatgcaccaaaagcaaaaggaaacaacaaatttccaaaagggtaagaaatcataccatcaaatcctgaatttggatggtaaagaaagaaattggta |
204 |
Q |
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| T |
29782379 |
ttatgatgcaccaaaaagaaaaggaaataacaaatttccaacagggtaagcaaccataccatcaaatccagcatttggataataaagaaggaaatcagca |
29782280 |
T |
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| Q |
205 |
gcttcaaaaccaagaagaggaagccttccttctcttgcataagatttaagagtaatatcaatgaccccagaaacaagctctttctcattcaccacaaacc |
304 |
Q |
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| T |
29782279 |
gcattgaaaccaagaagaggaagccttccttgtcttgcataagatttaagagcaatatcaatgaccccagaaacaagctctttctcattcacaacaaacc |
29782180 |
T |
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| Q |
305 |
ttataggacctgaacttcccatgatgttaatagttaccaagaacctattgattctacttgttttctggtctcccctattcttgttcatctca |
396 |
Q |
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| T |
29782179 |
ttataggacccgaacttcccatgatgttaatagtgaccaagaacttattaattctgcttgttttttggtctcccctattcttgttcttctca |
29782088 |
T |
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