View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0924_low_11 (Length: 378)
Name: NF0924_low_11
Description: NF0924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0924_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 30 - 359
Target Start/End: Original strand, 43831149 - 43831478
Alignment:
| Q |
30 |
aacaacactcaaaagaaaaagtaaaactcagatctacaaatttgggaattagttggatttctacaaaatttgaacataatcaaacacaaggcacccatca |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||| ||||||||| |
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| T |
43831149 |
aacaacactcaaaagaaaaagtaaaactcagatctacaaatttggggattagttggatttctgcaaaatttgaacatagtcaaacacaagacacccatca |
43831248 |
T |
|
| Q |
130 |
acctaaacatgacatgaaccccatcgatctccatcttcaatttcaacccctttcacaacctttcatcttcgtctaaaatcgtccgcacaaccttgtccga |
229 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43831249 |
acctaaacatgacatgaaccccatcgacctccatcttcaatttcaacccctttcacaacctttcatcttcgtctaaaatcgtccgcacaaccttgtccga |
43831348 |
T |
|
| Q |
230 |
gtgcgagatcaaagatctggtcagaaagcttttcgacttgtttagaaacgatggtaatgcggtgtagatgggaaatggattgtagtagttggttttggga |
329 |
Q |
| |
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|||||||||| |||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43831349 |
gtgcgagatcgaagatctggtcacaaagcttttcgacttgttcagaaacgatggtgatgcggtgtagatgggaaatggattgtagtagttggttttggga |
43831448 |
T |
|
| Q |
330 |
agttgttcttcttcctctcatttttctatt |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
43831449 |
agttgttcttcttcctctcatttttctatt |
43831478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 38 - 153
Target Start/End: Original strand, 43308885 - 43309000
Alignment:
| Q |
38 |
tcaaaagaaaaagtaaaactcagatctacaaatttgggaattagttggatttctacaaaatttgaacataatcaaacacaaggcacccatcaacctaaac |
137 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |||| ||| |||| | ||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
43308885 |
tcaaaagaaaaagtaaaaatcagatctacaaatttggggattaattgaatttttgcaaaatttgtacataatcaaacacaagacacccatcaacctaaac |
43308984 |
T |
|
| Q |
138 |
atgacatgaaccccat |
153 |
Q |
| |
|
|| ||||||||||||| |
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|
| T |
43308985 |
atcacatgaaccccat |
43309000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 30 - 359
Target Start/End: Original strand, 39309855 - 39310184
Alignment:
| Q |
30 |
aacaacactcaaaagaaaaagtaaaactcagatctacaaatttgggaattagttggatttctacaaaatttgaacataatcaaacacaaggcacccatca |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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|
| T |
39309855 |
aacaacactcaaaagaaaaagtaaaactcagatctacaaatttgggaattagttggatttctgcaaaatttgaacataatcaaacacaagacacccatca |
39309954 |
T |
|
| Q |
130 |
acctaaacatgacatgaaccccatcgatctccatcttcaatttcaacccctttcacaacctttcatcttcgtctaaaatcgtccgcacaaccttgtccga |
229 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39309955 |
acctaaacattacatgaaccccatcgacctccatcttcaatttcaacccctttcacaacctttcatcttcgtctaaaatcgtccgcacaaccttgtccga |
39310054 |
T |
|
| Q |
230 |
gtgcgagatcaaagatctggtcagaaagcttttcgacttgtttagaaacgatggtaatgcggtgtagatgggaaatggattgtagtagttggttttggga |
329 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||| |||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
39310055 |
gtgcgagatcgaagatctggtcataaagctttttgacttgttcagaaacgatggtgatgcggtgtagatgggaaatggaatgtagtagttggttttggga |
39310154 |
T |
|
| Q |
330 |
agttgttcttcttcctctcatttttctatt |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
39310155 |
agttgttcttcttcctctcatttttctatt |
39310184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 92 - 163
Target Start/End: Complemental strand, 40170923 - 40170852
Alignment:
| Q |
92 |
acaaaatttgaacataatcaaacacaaggcacccatcaacctaaacatgacatgaaccccatcgatctccat |
163 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||| |||| |||||||||||||||| |||||| |
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|
| T |
40170923 |
acaaaatttgaacctaatcaaacacaagacacccatcaaccacaacaccacatgaaccccatcgacctccat |
40170852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 40171028 - 40170987
Alignment:
| Q |
30 |
aacaacactcaaaagaaaaagtaaaactcagatctacaaatt |
71 |
Q |
| |
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|||||||||||||||| ||||||||| ||||||||||||||| |
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|
| T |
40171028 |
aacaacactcaaaagagaaagtaaaaatcagatctacaaatt |
40170987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 153
Target Start/End: Complemental strand, 21795558 - 21795512
Alignment:
| Q |
107 |
aatcaaacacaaggcacccatcaacctaaacatgacatgaaccccat |
153 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||| ||||| |
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| T |
21795558 |
aatcaaacacaagacacccatcaacctaaacatcacatgaatcccat |
21795512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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