View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0924_low_12 (Length: 376)

Name: NF0924_low_12
Description: NF0924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0924_low_12
NF0924_low_12
[»] chr8 (11 HSPs)
chr8 (208-376)||(26825907-26826075)
chr8 (319-371)||(24537491-24537543)
chr8 (54-90)||(26826193-26826229)
chr8 (54-90)||(17126555-17126591)
chr8 (54-90)||(21049732-21049768)
chr8 (54-90)||(21843366-21843402)
chr8 (54-90)||(21859177-21859213)
chr8 (54-90)||(22284665-22284701)
chr8 (54-90)||(22853726-22853762)
chr8 (54-90)||(23879547-23879583)
chr8 (54-90)||(43836607-43836643)
[»] scaffold0008 (1 HSPs)
scaffold0008 (217-371)||(233482-233636)
[»] chr5 (8 HSPs)
chr5 (217-376)||(20550077-20550236)
chr5 (217-371)||(24317916-24318069)
chr5 (319-376)||(24187815-24187872)
chr5 (220-269)||(24187908-24187957)
chr5 (54-90)||(20799441-20799477)
chr5 (54-90)||(21734929-21734965)
chr5 (54-90)||(23583280-23583316)
chr5 (54-90)||(23600477-23600513)
[»] chr3 (8 HSPs)
chr3 (221-371)||(16230718-16230868)
chr3 (319-361)||(3398581-3398623)
chr3 (54-90)||(13094285-13094321)
chr3 (54-90)||(13098042-13098078)
chr3 (54-90)||(14976624-14976660)
chr3 (54-90)||(17766408-17766444)
chr3 (54-90)||(20156357-20156393)
chr3 (54-90)||(50909234-50909270)
[»] chr1 (6 HSPs)
chr1 (54-90)||(4028017-4028053)
chr1 (54-90)||(2385951-2385987)
chr1 (54-90)||(16485009-16485045)
chr1 (54-90)||(22660408-22660444)
chr1 (54-90)||(27911663-27911699)
chr1 (54-90)||(28206696-28206732)
[»] chr6 (14 HSPs)
chr6 (318-371)||(24253092-24253145)
chr6 (54-90)||(12657661-12657697)
chr6 (54-90)||(15153401-15153437)
chr6 (54-90)||(18195861-18195897)
chr6 (54-90)||(18732053-18732089)
chr6 (54-90)||(18822592-18822628)
chr6 (54-90)||(18854348-18854384)
chr6 (54-90)||(21317367-21317403)
chr6 (54-90)||(23297757-23297793)
chr6 (54-90)||(23574194-23574230)
chr6 (54-90)||(25402795-25402831)
chr6 (54-90)||(25606636-25606672)
chr6 (54-90)||(25614974-25615010)
chr6 (54-90)||(29596026-29596062)
[»] scaffold1208 (1 HSPs)
scaffold1208 (54-90)||(2279-2315)
[»] scaffold0825 (1 HSPs)
scaffold0825 (54-90)||(2694-2730)
[»] scaffold0566 (1 HSPs)
scaffold0566 (54-90)||(2941-2977)
[»] scaffold0500 (1 HSPs)
scaffold0500 (54-90)||(12544-12580)
[»] scaffold0331 (1 HSPs)
scaffold0331 (54-90)||(11128-11164)
[»] scaffold0138 (1 HSPs)
scaffold0138 (54-90)||(27098-27134)
[»] scaffold0113 (1 HSPs)
scaffold0113 (54-90)||(550-586)
[»] scaffold0076 (1 HSPs)
scaffold0076 (54-90)||(22862-22898)
[»] scaffold0066 (1 HSPs)
scaffold0066 (54-90)||(61658-61694)
[»] scaffold0056 (1 HSPs)
scaffold0056 (54-90)||(42422-42458)
[»] scaffold0032 (1 HSPs)
scaffold0032 (54-90)||(117491-117527)
[»] scaffold0031 (1 HSPs)
scaffold0031 (54-90)||(102142-102178)
[»] scaffold0017 (1 HSPs)
scaffold0017 (54-90)||(189936-189972)
[»] scaffold0012 (1 HSPs)
scaffold0012 (54-90)||(101696-101732)
[»] scaffold0011 (1 HSPs)
scaffold0011 (54-90)||(164245-164281)
[»] scaffold0009 (1 HSPs)
scaffold0009 (54-90)||(151211-151247)
[»] scaffold0005 (1 HSPs)
scaffold0005 (54-90)||(300473-300509)
[»] scaffold0001 (1 HSPs)
scaffold0001 (54-90)||(49682-49718)
[»] chr7 (9 HSPs)
chr7 (54-90)||(783110-783146)
chr7 (54-90)||(4294308-4294344)
chr7 (54-90)||(12554683-12554719)
chr7 (54-90)||(12561617-12561653)
chr7 (54-90)||(12567351-12567387)
chr7 (54-90)||(13755343-13755379)
chr7 (54-90)||(16077162-16077198)
chr7 (54-90)||(19364138-19364174)
chr7 (54-90)||(41781473-41781509)
[»] chr4 (10 HSPs)
chr4 (54-90)||(3354977-3355013)
chr4 (54-90)||(11502098-11502134)
chr4 (54-90)||(16218161-16218197)
chr4 (54-90)||(16221481-16221517)
chr4 (54-90)||(16374981-16375017)
chr4 (54-90)||(16643114-16643150)
chr4 (54-90)||(17484752-17484788)
chr4 (54-90)||(18286712-18286748)
chr4 (54-90)||(18292276-18292312)
chr4 (54-90)||(18983706-18983742)
[»] chr2 (2 HSPs)
chr2 (54-90)||(25144599-25144635)
chr2 (54-90)||(42767696-42767732)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 208 - 376
Target Start/End: Complemental strand, 26826075 - 26825907
Alignment:
Q  208 gactcatcactccacaaaagaactagtaaccttcaccttctttaataaatttatcaattgcttcaaattatgttcttcggttgcctcattgattgtcatt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26826075 gactcatcactccacaaaagaactagtaaccttcaccttctttaataaatttatcaattgcttcaaattatgttcttcggttgcctcattgattgtcatt 26825976  T
Q  308 gttggtgtccctttggttgattccattgttacctatttcacacaataattgcaacttcgagaaacattc 376  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  26825975 gttggtgtccttttggttgattccattgttacctatttcacacaataattgcaacttcgaaaaaaattc 26825907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 24537491 - 24537543
Alignment:
Q  319 tttggttgattccattgttacctatttcacacaataattgcaacttcgagaaa 371  Q
    ||||||||||||||| ||||||||||||||||||||||||||  |||||||||    
T  24537491 tttggttgattccatggttacctatttcacacaataattgcaggttcgagaaa 24537543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 26826229 - 26826193
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| ||||||||||||||||||||||||||||||    
T  26826229 ttgctcaaagactcaatccattaaatattcgttcctg 26826193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 17126591 - 17126555
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  17126591 ttgctccaagactcaatccatcaaatattcgttcctg 17126555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 21049768 - 21049732
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  21049768 ttgctccaagactcaatccatcaaatattcgttcctg 21049732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 21843366 - 21843402
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  21843366 ttgctccaagactcaatccatcaaatattcgttcctg 21843402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 21859177 - 21859213
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  21859177 ttgctccaagactcaatccatcaaatattcgttcctg 21859213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 22284701 - 22284665
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  22284701 ttgctccaagactcaatccatcaaatattcgttcctg 22284665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 22853762 - 22853726
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  22853762 ttgctccaagactcaatccatcaaatattcgttcctg 22853726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 23879583 - 23879547
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  23879583 ttgctccaagactcaatccatcaaatattcgttcctg 23879547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 43836607 - 43836643
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  43836607 ttgctctaagactcaatccatcaaatattcattcctg 43836643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 217 - 371
Target Start/End: Original strand, 233482 - 233636
Alignment:
Q  217 ctccacaaaagaactagtaaccttcaccttctttaataaatttatcaattgcttcaaattatgttcttcggttgcctcattgattgtcattgttggtgtc 316  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||| |  ||||||| | |||||||||| ||||     
T  233482 ctccacaaaagaactagtaaccttcaccttctttaataaatttaccaattgctccaaattttgttcttcgttctcctcattaaatgtcattgtttgtgtg 233581  T
Q  317 cctttggttgattccattgttacctatttcacacaataattgcaacttcgagaaa 371  Q
    | ||| ||| | |||||  |||||||||||| ||||||||||||| |||||||||    
T  233582 cttttagttcagtccatgattacctatttcagacaataattgcaagttcgagaaa 233636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 217 - 376
Target Start/End: Complemental strand, 20550236 - 20550077
Alignment:
Q  217 ctccacaaaagaactagtaaccttcaccttctttaataaatttatcaattgcttcaaattatgttcttcggttgcctcattgattgtcattgttggtgtc 316  Q
    ||||| ||||||||||||||||||||| ||||||||||| |||| ||||||||  ||||| |||||||||||  |||||||   |  |||||||  |||     
T  20550236 ctccataaaagaactagtaaccttcacattctttaataactttaccaattgctcgaaattttgttcttcggtctcctcatttggtaccattgtttatgtg 20550137  T
Q  317 cctttggttgattccattgttacctatttcacacaataattgcaacttcgagaaacattc 376  Q
    | ||||||||| ||||| |||||||||||||||||||||||| || ||||||||| ||||    
T  20550136 cttttggttgagtccatggttacctatttcacacaataattgtaagttcgagaaatattc 20550077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 217 - 371
Target Start/End: Complemental strand, 24318069 - 24317916
Alignment:
Q  217 ctccacaaaagaactagtaaccttcaccttctttaataaatttatcaattgcttcaaattatgttcttcggttgcctcattgattgtcattgttggtgtc 316  Q
    |||||||||| ||||||||||||| |||||||||| |||||| |||| ||||| || |||||||||||| |   |||  |   ||| ||||| |  |||     
T  24318069 ctccacaaaacaactagtaaccttaaccttctttagtaaattgatcagttgctccagattatgttcttctgagtccttttaagttgccattgattatgtg 24317970  T
Q  317 cctttggttgattccattgttacctatttcacacaataattgcaacttcgagaaa 371  Q
    | ||||||||||||||| ||||||| ||||||||||||||||||  |||||||||    
T  24317969 cttttggttgattccatggttacct-tttcacacaataattgcattttcgagaaa 24317916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 319 - 376
Target Start/End: Complemental strand, 24187872 - 24187815
Alignment:
Q  319 tttggttgattccattgttacctatttcacacaataattgcaacttcgagaaacattc 376  Q
    |||||||||||| || ||||||||||||||||||||||| ||| ||||||||| ||||    
T  24187872 tttggttgattcaatggttacctatttcacacaataatttcaagttcgagaaaaattc 24187815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 269
Target Start/End: Complemental strand, 24187957 - 24187908
Alignment:
Q  220 cacaaaagaactagtaaccttcaccttctttaataaatttatcaattgct 269  Q
    |||||||||||||||||||||||||||||||| ||| || ||||| ||||    
T  24187957 cacaaaagaactagtaaccttcaccttctttagtaatttgatcaactgct 24187908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 20799477 - 20799441
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  20799477 ttgctccaagactcaatccatcaaatattcgttcctg 20799441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 21734929 - 21734965
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  21734929 ttgctccaagactcaatccatcaaatattcgttcctg 21734965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 23583280 - 23583316
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  23583280 ttgctccaagactcaatccatcaaatattcgttcctg 23583316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 23600477 - 23600513
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  23600477 ttgctccaagactcaatccatcaaatattcgttcctg 23600513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 221 - 371
Target Start/End: Complemental strand, 16230868 - 16230718
Alignment:
Q  221 acaaaagaactagtaaccttcaccttctttaataaatttatcaattgcttcaaattatgttcttcggttgcctcattgattgtcattgttggtgtccctt 320  Q
    ||||||||||||||||||||||||||||||| ||| |||| |||||||| | |||| |||| |||| |  | |||||  ||| ||||||   ||| | ||    
T  16230868 acaaaagaactagtaaccttcaccttctttagtaactttaccaattgctcccaattttgtttttcgatctcttcatttgttgccattgtctttgtgcttt 16230769  T
Q  321 tggttgattccattgttacctatttcacacaataattgcaacttcgagaaa 371  Q
    ||||||| ||||| ||||||||||||||||||||||||||| |||||||||    
T  16230768 tggttgagtccatggttacctatttcacacaataattgcaagttcgagaaa 16230718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 361
Target Start/End: Complemental strand, 3398623 - 3398581
Alignment:
Q  319 tttggttgattccattgttacctatttcacacaataattgcaa 361  Q
    ||||||||||| |||  ||||||||||||||||||||||||||    
T  3398623 tttggttgattacatgattacctatttcacacaataattgcaa 3398581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 13094285 - 13094321
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  13094285 ttgctccaagactcaatccatcaaatattcgttcctg 13094321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 13098078 - 13098042
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  13098078 ttgctccaagactcaatccatcaaatattcgttcctg 13098042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 14976624 - 14976660
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  14976624 ttgctccaagactcaatccatcaaatattcgttcctg 14976660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 17766444 - 17766408
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  17766444 ttgctccaagactcaatccatcaaatattcgttcctg 17766408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 20156357 - 20156393
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  20156357 ttgctccaagactcaatccatcaaatattcgttcctg 20156393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 50909234 - 50909270
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  50909234 ttgctccaagactcaatccatcaaatattcgttcctg 50909270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 4028053 - 4028017
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| ||||||||||||||||||||||||||||||    
T  4028053 ttgctccaagactcaatccattaaatattcgttcctg 4028017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 2385987 - 2385951
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  2385987 ttgctccaagactcaatccatcaaatattcgttcctg 2385951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 16485045 - 16485009
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  16485045 ttgctccaagactcaatccatcaaatattcgttcctg 16485009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 22660408 - 22660444
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  22660408 ttgctccaagactcaatccatcaaatattcgttcctg 22660444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 27911663 - 27911699
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  27911663 ttgctccaagactcaatccatcaaatattcgttcctg 27911699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 28206696 - 28206732
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  28206696 ttgctccaagactcaatccatcaaatattcgttcctg 28206732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 371
Target Start/End: Complemental strand, 24253145 - 24253092
Alignment:
Q  318 ctttggttgattccattgttacctatttcacacaataattgcaacttcgagaaa 371  Q
    ||||||||| ||||||  |||||||||||||||||||||  ||| |||||||||    
T  24253145 ctttggttgcttccatgattacctatttcacacaataatcacaagttcgagaaa 24253092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 12657661 - 12657697
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  12657661 ttgctccaagactcaatccatcaaatattcgttcctg 12657697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 15153437 - 15153401
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  15153437 ttgctccaagactcaatccatcaaatattcgttcctg 15153401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 18195861 - 18195897
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  18195861 ttgctccaagactcaatccatcaaatattcgttcctg 18195897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 18732089 - 18732053
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  18732089 ttgctccaagactcaatccatcaaatattcgttcctg 18732053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 18822628 - 18822592
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  18822628 ttgctccaagactcaatccatcaaatattcgttcctg 18822592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 18854384 - 18854348
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  18854384 ttgctccaagactcaatccatcaaatattcgttcctg 18854348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 21317403 - 21317367
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  21317403 ttgctccaagactcaatccatcaaatattcgttcctg 21317367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 23297757 - 23297793
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  23297757 ttgctccaagactcaatccatcaaatattcgttcctg 23297793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 23574194 - 23574230
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  23574194 ttgctccaagactcaatccatcaaatattcgttcctg 23574230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 25402795 - 25402831
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  25402795 ttgctcaaagactcaatccatcaaatattcgttcctg 25402831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 25606672 - 25606636
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  25606672 ttgctccaagactcaatccatcaaatattcgttcctg 25606636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 25615010 - 25614974
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  25615010 ttgctccaagactcaatccatcaaatattcgttcctg 25614974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 29596062 - 29596026
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  29596062 ttgctccaagactcaatccatcaaatattcgttcctg 29596026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1208 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1208
Description:

Target: scaffold1208; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 2279 - 2315
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  2279 ttgctccaagactcaatccatcaaatattcgttcctg 2315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0825 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0825
Description:

Target: scaffold0825; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 2694 - 2730
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  2694 ttgctctaaaactcaatccatcaaatattcgttcctg 2730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0566 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0566
Description:

Target: scaffold0566; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 2977 - 2941
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  2977 ttgctccaagactcaatccatcaaatattcgttcctg 2941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 12580 - 12544
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  12580 ttgctccaagactcaatccatcaaatattcgttcctg 12544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0331 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0331
Description:

Target: scaffold0331; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 11128 - 11164
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  11128 ttgctccaagactcaatccatcaaatattcgttcctg 11164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 27134 - 27098
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  27134 ttgctccaagactcaatccatcaaatattcgttcctg 27098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 586 - 550
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  586 ttgctccaagactcaatccatcaaatattcgttcctg 550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 22898 - 22862
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  22898 ttgctccaagactcaatccatcaaatattcgttcctg 22862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 61694 - 61658
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  61694 ttgctccaagactcaatccatcaaatattcgttcctg 61658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 42458 - 42422
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  42458 ttgctccaagactcaatccatcaaatattcgttcctg 42422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 117527 - 117491
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  117527 ttgctccaagactcaatccatcaaatattcgttcctg 117491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 102178 - 102142
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  102178 ttgctccaagactcaatccatcaaatattcgttcctg 102142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 189972 - 189936
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  189972 ttgctctaagactcaatccatcaaatattcattcctg 189936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 101732 - 101696
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  101732 ttgctccaagactcaatccatcaaatattcgttcctg 101696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 164245 - 164281
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  164245 ttgctccaagactcaatccatcaaatattcgttcctg 164281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 151211 - 151247
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  151211 ttgctccaagactcaatccatcaaatattcgttcctg 151247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 300473 - 300509
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  300473 ttgctccaagactcaatccatcaaatattcgttcctg 300509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 49682 - 49718
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  49682 ttgctccaagactcaatccatcaaatattcgttcctg 49718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 783110 - 783146
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  783110 ttgctccaagactcaatccatcaaatattcgttcctg 783146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 4294344 - 4294308
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  4294344 ttgctccaagactcaatccatcaaatattcgttcctg 4294308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 12554683 - 12554719
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  12554683 ttgctccaagactcaatccatcaaatattcgttcctg 12554719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 12561653 - 12561617
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  12561653 ttgctccaagactcaatccatcaaatattcgttcctg 12561617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 12567387 - 12567351
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  12567387 ttgctccaagactcaatccatcaaatattcgttcctg 12567351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 13755343 - 13755379
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  13755343 ttgctccaagactcaatccatcaaatattcgttcctg 13755379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 16077162 - 16077198
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  16077162 ttgctccaagactcaatccatcaaatattcgttcctg 16077198  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 19364174 - 19364138
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  19364174 ttgctccaagactcaatccatcaaatattcgttcctg 19364138  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 41781509 - 41781473
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  41781509 ttgctccaagactcaatccatcaaatattcgttcctg 41781473  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 3355013 - 3354977
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  3355013 ttgctccaagactcaatccatcaaatattcgttcctg 3354977  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 11502098 - 11502134
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  11502098 ttgctccaagactcaatccatcaaatattcgttcctg 11502134  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 16218161 - 16218197
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  16218161 ttgctccaagactcaatccatcaaatattcgttcctg 16218197  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 16221481 - 16221517
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  16221481 ttgctccaagactcaatccatcaaatattcgttcctg 16221517  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 16374981 - 16375017
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  16374981 ttgctccaagactcaatccatcaaatattcgttcctg 16375017  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 16643114 - 16643150
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  16643114 ttgctccaagactcaatccatcaaatattcgttcctg 16643150  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 17484752 - 17484788
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  17484752 ttgctccaagactcaatccatcaaatattcgttcctg 17484788  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 18286748 - 18286712
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  18286748 ttgctccaagactcaatccatcaaatattcgttcctg 18286712  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 18292312 - 18292276
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  18292312 ttgctccaagactcaatccatcaaatattcgttcctg 18292276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 18983742 - 18983706
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  18983742 ttgctccaagactcaatccatcaaatattcgttcctg 18983706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 25144599 - 25144635
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  25144599 ttgctccaagactcaatccatcaaatattcgttcctg 25144635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 42767696 - 42767732
Alignment:
Q  54 ttgctctaagactcaatccattaaatattcgttcctg 90  Q
    |||||| |||||||||||||| |||||||||||||||    
T  42767696 ttgctccaagactcaatccatcaaatattcgttcctg 42767732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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