View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0924_low_13 (Length: 372)
Name: NF0924_low_13
Description: NF0924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0924_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 30 - 314
Target Start/End: Original strand, 9452724 - 9453007
Alignment:
| Q |
30 |
actattatataattataattgtgtaattaaaaatcaaggaaataaaactttgtcaagtatcaggttaacaattccttgctctattataatagtacataaa |
129 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9452724 |
actattatataattataattgtgtaatgaaa--tcagggaaataaaactttgtcaagtatcaggttaacaattccttgctctattatgatagtacataaa |
9452821 |
T |
|
| Q |
130 |
ttagatttggttagataaataaaactttgtcaaaa-aacaatttgagatggcaaagatattttataagaaaaatgctagataccgcgagaggatttttca |
228 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9452822 |
ttagatttggttagaaaaataaaactttgtcaaaaaaacaatttgagatggcaaagatattttataagaaaaatgctagataccgcgagaggatttttca |
9452921 |
T |
|
| Q |
229 |
caaaagcttccagaatgagttgacaacacaccatccattggatcttatatttaatgaattcaccgcttcatcttaaaagagcaaca |
314 |
Q |
| |
|
| |||||||| |||||||| || |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9452922 |
cgaaagcttctagaatgagatggcaacacaccatccattagatcttatatttaatgaatttaccgcttcatcttaaaagagcaaca |
9453007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 29 - 195
Target Start/End: Complemental strand, 21546750 - 21546588
Alignment:
| Q |
29 |
aactattatataattataattgtgtaattaaaaatcaaggaaataaaactttgtcaagtatcaggttaacaattccttgctctattataatagtacataa |
128 |
Q |
| |
|
||||||||||||||||||| |||||||| ||| ||| |||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21546750 |
aactattatataattataactgtgtaatgaaa--tcagggaaataaaact--gtcaagtaacaggttaacaattccttgctctattatgatagtacataa |
21546655 |
T |
|
| Q |
129 |
attagatttggttagataaataaaactttgtcaaaaaacaatttgagatggcaaagatattttataa |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
21546654 |
attagatttggttagataaataaaactttgtcaaaaaacaatttgatatgacaaagatattttataa |
21546588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 196 - 314
Target Start/End: Original strand, 46424083 - 46424194
Alignment:
| Q |
196 |
gaaaaatgctagataccgcgagaggatttttcacaaaagcttccagaatgagttgacaacacaccatccattggatcttatatttaatgaattcaccgct |
295 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
46424083 |
gaaaaatgctagatacagcaagagggtttttcacgaaagc-------atgagttgacaacacaccatccattggatcttatatttaatgaattcatcgct |
46424175 |
T |
|
| Q |
296 |
tcatcttaaaagagcaaca |
314 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
46424176 |
tcatcttaaaagagcaaca |
46424194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 326 - 362
Target Start/End: Complemental strand, 15385698 - 15385662
Alignment:
| Q |
326 |
gtcaagtttctgttccaaatcccacatactgcctttg |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15385698 |
gtcaagtttctgttccaaatcccacatactgcctttg |
15385662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 471 times since January 2019
Visitors: 6704