View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0924_low_14 (Length: 369)
Name: NF0924_low_14
Description: NF0924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0924_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 24909431 - 24909657
Alignment:
| Q |
1 |
ttctagaaagagaaaaacttaagaaataccaagaacatgatgtataaattcattgtaatatcctttcaaaagagagtcattagatcatgttgtaaatcaa |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||| |
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| T |
24909431 |
ttctagaaagagaaaaacttaagaaaaaccaagaacatgatgtataaattcattgtaatatcctctcaaaagagagtgattagatcatgttgcaaatcaa |
24909530 |
T |
|
| Q |
101 |
tagtgtagtctaagtacacttgaattgaccttggattcaaattgtaatatcctttattagagagtaaatgatcctatatattctatgaccttgtattact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24909531 |
tagtgtagtctaagtacacttgaattgatcttggattcaaattgtaatatcctttattagagagtaaatgatcc----tattctatgaccttgtattact |
24909626 |
T |
|
| Q |
201 |
cgaagacaaattcaacccgatgtaaatgacc |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
24909627 |
cgaagacaaattcaacccgatgtaaatgacc |
24909657 |
T |
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