View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0924_low_22 (Length: 298)
Name: NF0924_low_22
Description: NF0924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0924_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 3494953 - 3495242
Alignment:
| Q |
1 |
cagtgtacaccgtgttagccaacctttagttatcaaacttaaaattattat--gagtataatcttcagtgacaatgaaaagtttggttattaaaaaggcc |
98 |
Q |
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|||||||| |||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3494953 |
cagtgtacgccgtgttagccagcctttaattatcaaacttaaaattattatttgagtataatcttcagtgacaatgaaaagtttggttattaaaaaggcc |
3495052 |
T |
|
| Q |
99 |
gtgtcaannnnnnnnnnccaaaatttaaatttcattattaatatttataattttactatgttttcttgttcaggtgagccttcttttggggactattgtg |
198 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3495053 |
gtgtcaatttttttc--ccaaaatttaaatttcattattaatatttataatttcactatgttttcttgttcaggtgagccttcttttggggactattgtg |
3495150 |
T |
|
| Q |
199 |
agaaaggtaccattgccaaatgcatgttcggattcgtctgagctggagggggcttctattgacactgtggactgttcatctgattctgtgct |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3495151 |
agaaaggtaccattgccaaatgcatgttcggattcgtctgagctggagggggcttctattgacactgtggactgttcatctgattctgtgct |
3495242 |
T |
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