View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0924_low_26 (Length: 257)
Name: NF0924_low_26
Description: NF0924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0924_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 13889728 - 13889956
Alignment:
| Q |
1 |
caacttgaaaatgcaacgacgaatcaaaaactttgtaacgatcctcactaacgagcacattgaacaatccgaccctaataggagtgaaggaaatcttcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13889728 |
caacttgaaaatgcaacgacgaatcaaaaactttgtaacgatcctcactaacgagcacattgaacaatccgaccctaataggagtgaaggaaatcttcca |
13889827 |
T |
|
| Q |
101 |
attatcaaaatctccttcgaaattcgacaacacggtggatacataggaactatttccatcctttccattgacattaagtatgagatggaa-nnnnnnngg |
199 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
13889828 |
attatcaaaatctcctttgaaattcgacaacacggtggatacataggaactatttccatcctttccattgacattaagtatgagatggaatttttttttg |
13889927 |
T |
|
| Q |
200 |
tcaatcttatcaccattctcaagtacttt |
228 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
13889928 |
tcaatcttatcaccattctcaagtacttt |
13889956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 14029853 - 14030081
Alignment:
| Q |
1 |
caacttgaaaatgcaacgacgaatcaaaaactttgtaacgatcctcactaacgagcacattgaacaatccgaccctaataggagtgaaggaaatcttcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14029853 |
caacttgaaaatgcaacgacgaatcaaaaactttgtaacgatcctcactaacgagcacattgaacaatccgaccctaataggagtgaaggaaatcttcca |
14029952 |
T |
|
| Q |
101 |
attatcaaaatctccttcgaaattcgacaacacggtggatacataggaactatttccatcctttccattgacattaagtatgagatggaa-nnnnnnngg |
199 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
14029953 |
attatcaaaatctcctttgaaattcgacaacacggtggatacataggaactatttccatcctttccattgacattaagtatgagatggaatttttttttg |
14030052 |
T |
|
| Q |
200 |
tcaatcttatcaccattctcaagtacttt |
228 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
14030053 |
tcaatcttatcaccattctcaagtacttt |
14030081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 7690988 - 7691216
Alignment:
| Q |
1 |
caacttgaaaatgcaacgacgaatcaaaaactttgtaacgatcctcactaacgagcacattgaacaatccgaccctaataggagtgaaggaaatcttcca |
100 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||| ||| ||| ||||||||||||||||||||||||| |
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| T |
7690988 |
caacttggaaatgcaacgatgaatcaaaaactttgtagcgatcctcactaatgagcacattgaacagtccaaccttaataggagtgaaggaaatcttcca |
7691087 |
T |
|
| Q |
101 |
attatcaaaatctccttcgaaattcgacaacacggtggatacataggaactatttccatcctttccattgacattaagtatgagatgg-aannnnnnngg |
199 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| || ||||||||||||||||| || |||||||||||||||||||||||||||||| || | |
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|
| T |
7691088 |
atgatcaaaatctccttcgaaattcgacaacactgttgatacataggaactattcccttcctttccattgacattaagtatgagatggaaattatttttg |
7691187 |
T |
|
| Q |
200 |
tcaatcttatcaccattctcaagtacttt |
228 |
Q |
| |
|
||||| ||||||||||||||||||||||| |
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|
| T |
7691188 |
tcaattttatcaccattctcaagtacttt |
7691216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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