View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0924_low_27 (Length: 256)

Name: NF0924_low_27
Description: NF0924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0924_low_27
NF0924_low_27
[»] chr5 (3 HSPs)
chr5 (2-88)||(14591792-14591877)
chr5 (91-131)||(14591941-14591981)
chr5 (91-136)||(19828723-19828768)
[»] chr3 (2 HSPs)
chr3 (27-88)||(40396880-40396940)
chr3 (91-131)||(50232625-50232665)
[»] chr1 (1 HSPs)
chr1 (91-131)||(50052889-50052929)


Alignment Details
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 14591792 - 14591877
Alignment:
Q  2 catttcctagtttgaagtaccttgagggagaagatccactccactggaaatttcctccgggttttctcttgtgaaataatcttagcc 88  Q
    |||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||  |||||||| ||||||||||||||||||    
T  14591792 catttcctagtttgaagtacctcgagggagaggatccactccagtggaaatttcctcc-tgttttctcctgtgaaataatcttagcc 14591877  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 14591941 - 14591981
Alignment:
Q  91 caagttcattcatttcttttcttcccttcgtcacgttgttt 131  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  14591941 caagttcattcatttcttttcttcccttcctcacgttgttt 14591981  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 19828723 - 19828768
Alignment:
Q  91 caagttcattcatttcttttcttcccttcgtcacgttgttttgttt 136  Q
    ||||||||||||||||||| |||| |||| ||||||||||| ||||    
T  19828723 caagttcattcatttctttccttctcttcctcacgttgtttcgttt 19828768  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 40396940 - 40396880
Alignment:
Q  27 gggagaagatccactccactggaaatttcctccgggttttctcttgtgaaataatcttagcc 88  Q
    |||||| ||||||||||| ||||||||| |||| | ||||||| ||||||||||||||||||    
T  40396940 gggagaggatccactccagtggaaattttctcctg-ttttctcctgtgaaataatcttagcc 40396880  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 50232665 - 50232625
Alignment:
Q  91 caagttcattcatttcttttcttcccttcgtcacgttgttt 131  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  50232665 caagttgattcatttcttttcttcccttcctcacgttgttt 50232625  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 50052889 - 50052929
Alignment:
Q  91 caagttcattcatttcttttcttcccttcgtcacgttgttt 131  Q
    ||||||||||||||||||||||| ||||| |||| ||||||    
T  50052889 caagttcattcatttcttttctttccttcctcacattgttt 50052929  T

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