View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0924_low_30 (Length: 251)
Name: NF0924_low_30
Description: NF0924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0924_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 41876223 - 41876380
Alignment:
| Q |
1 |
tgttttaaaattttcataaattttagtatcctcttctcgattttccaacaaaatgaaaattgtaggcggtggtatggcatcgggagtagcattagctgcc |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41876223 |
tgttttaaaattttcataaattttagtattctcttctcgattttccaacaaaatgaaaattgtaggcggtggtatggcatcgggagtagcattagctgcc |
41876322 |
T |
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| Q |
101 |
aaggccattaacccgtctattcggattttggctgctgagccaaaaggagttgatgatg |
158 |
Q |
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| T |
41876323 |
aaggccattaacccgtctattcggattttggctgctgagccaaaaggagctgatgatg |
41876380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 24817616 - 24817467
Alignment:
| Q |
9 |
aattttcataaattttagtatcctcttctcgattttccaacaaaatgaaaattgtaggcggtggtatggcatcgggagtagcattagctgccaaggccat |
108 |
Q |
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| T |
24817616 |
aatttgcatataatttagtatcctcttatcgattttgttacaaaatgatacttgcaggcggcggtatgatagcaggaatagcaatagctgccaaggcgat |
24817517 |
T |
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| Q |
109 |
taacccgtctattcggattttggctgctgagccaaaaggagttgatgatg |
158 |
Q |
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| T |
24817516 |
taatccggctattcgtattttggctgctgagcctaaaggagctgatgatg |
24817467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 24800540 - 24800391
Alignment:
| Q |
9 |
aattttcataaattttagtatcctcttctcgattttccaacaaaatgaaaattgtaggcggtggtatggcatcgggagtagcattagctgccaaggccat |
108 |
Q |
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| T |
24800540 |
aatttgcatataatttagtatcctcttatcgattttgttacaaaatgatacttgcaggtggcggtatgatagcaggaatagcaatagctgccaaggcgat |
24800441 |
T |
|
| Q |
109 |
taacccgtctattcggattttggctgctgagccaaaaggagttgatgatg |
158 |
Q |
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||| ||| ||||||| ||||||||||||||||| ||||||| |||||||| |
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| T |
24800440 |
taatccggctattcgtattttggctgctgagcctaaaggagctgatgatg |
24800391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 40867842 - 40867697
Alignment:
| Q |
1 |
tgttttaaaattttcataaattttagtatcctcttctcgattttccaacaaaatgaaaattgtaggcggtggtatggcatcgggagtagcattagctgcc |
100 |
Q |
| |
|
||||| ||||||| ||| ||||| |||||| ||||| |||||||||||||| |||||| || ||| |||||| || ||| ||||||||||| |||||| |
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| T |
40867842 |
tgtttcaaaatttgcattgattttggtatccccttcttgattttccaacaaa-tgaaaactgcaggaggtggtttgatatcaggagtagcattggctgcc |
40867744 |
T |
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| Q |
101 |
aaggccattaacccgtctattcggattttggctgctgagccaaaagg |
147 |
Q |
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||| | || |||||| | ||||| |||||||||||||| || ||||| |
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| T |
40867743 |
aagtctatcaacccggccattcgtattttggctgctgaacctaaagg |
40867697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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