View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0924_low_31 (Length: 251)
Name: NF0924_low_31
Description: NF0924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0924_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 8381852 - 8381609
Alignment:
| Q |
1 |
aaggctgattctcacagaaccagagctaataaaagatgtcttaaacagaacttctgaattacaaaagccaaaatatgagattttcaaatttctatttagt |
100 |
Q |
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| T |
8381852 |
aaggctgattctcacagaaccagagctaataaaagatgtcttaaacagaacttctgaattacaaaagccaaaatatgagattttcaaatttctatttagt |
8381753 |
T |
|
| Q |
101 |
ggtcttataattcacgagggagaaaagtggagaaagcatagaaggttaatgaacgctgctttccagttagaaaaattgaaggttattttcttttaactag |
200 |
Q |
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| T |
8381752 |
ggtcttataattcacgagggagaaaagtggagaaagcatagaaggttaatgaacgctgctttccagttagaaaaattgaaggttattttcttttaactag |
8381653 |
T |
|
| Q |
201 |
atatttataaattggttcaagcatgtctctattttcctttgttt |
244 |
Q |
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| T |
8381652 |
atatttataaattggttcaagcatgtctctattttcctttgttt |
8381609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 185
Target Start/End: Original strand, 30393800 - 30393975
Alignment:
| Q |
10 |
tctcacagaaccagagctaataaaagatgtcttaaacagaacttctgaattacaaaagccaaaatatgagattttcaaatttctatttagtggtcttata |
109 |
Q |
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| T |
30393800 |
tctcacagaacctgagcaaataaaagatgtattgaacaaaatgtctgacttcccaaagactaactataagattttcaagttactagctagtggtcttgct |
30393899 |
T |
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| Q |
110 |
attcacgagggagaaaagtggagaaagcatagaaggttaatgaacgctgctttccagttagaaaaattgaaggtta |
185 |
Q |
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| T |
30393900 |
agttatgggggagaaaaatggagcaagcatagaaggctaatcaaccctgctttccatttagaacaattgaaggtta |
30393975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 30383755 - 30383824
Alignment:
| Q |
116 |
gagggagaaaagtggagaaagcatagaaggttaatgaacgctgctttccagttagaaaaattgaaggtta |
185 |
Q |
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| T |
30383755 |
gagggagaaaagtggagcaagcatagaaagctaatcaaccctgctttccatttagaaaagttgaaggtta |
30383824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 190
Target Start/End: Original strand, 30482135 - 30482225
Alignment:
| Q |
100 |
tggtcttataattcacgagggagaaaagtggagaaagcatagaaggttaatgaacgctgctttccagttagaaaaattgaaggttattttc |
190 |
Q |
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| T |
30482135 |
tggtcttataacccatgagggtgaaaagtggagcaagcatagaaagataataaatcctgcattccatttagaaaaattgaaggttagtttc |
30482225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 23767286 - 23767356
Alignment:
| Q |
119 |
ggagaaaagtggagaaagcatagaaggttaatgaacgctgctttccagttagaaaaattgaaggttatttt |
189 |
Q |
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| T |
23767286 |
ggagaaaagtggaccaagcatagaaggataatcaaccctgcttttcacatggaaaaattgaaggttatttt |
23767356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 30423851 - 30423933
Alignment:
| Q |
100 |
tggtcttataattcacgagggagaaaagtggagaaagcatagaaggttaatgaacgctgctttccagttagaaaaattgaagg |
182 |
Q |
| |
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||||||||||| ||| ||||||||| ||||||| ||||| |||| | | || ||| |||| ||||| |||||||||||||||| |
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| T |
30423851 |
tggtcttataagtcatgagggagaacagtggagcaagcacagaaagattatcaaccctgcattccatttagaaaaattgaagg |
30423933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 23784841 - 23784766
Alignment:
| Q |
119 |
ggagaaaagtggagaaagcatagaaggttaatgaacgctgctttccagttagaaaaattgaaggttattttctttt |
194 |
Q |
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|||||||||||||| ||||||||||| |||| ||| |||| || || | ||||||||||||||||| ||||||| |
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| T |
23784841 |
ggagaaaagtggagcaagcatagaagaataatcaaccctgcgtttcacatggaaaaattgaaggttatcttctttt |
23784766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 187
Target Start/End: Complemental strand, 41628832 - 41628723
Alignment:
| Q |
78 |
agattttcaaatttctatttagtggtcttataattcacgagggagaaaagtggagaaagcatagaaggttaatgaacgctgctttccagttagaaaaatt |
177 |
Q |
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|||||||||| || ||| ||||||||||| || || ||||||||||||||||| |||||||||||| |||| ||| | |||||||| | ||||||||| |
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| T |
41628832 |
agattttcaagttactagttagtggtcttgcaagtcttgagggagaaaagtggagcaagcatagaaggctaatcaaccccgctttccattcagaaaaatt |
41628733 |
T |
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| Q |
178 |
gaaggttatt |
187 |
Q |
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|||||||||| |
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| T |
41628732 |
gaaggttatt |
41628723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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