View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0924_low_38 (Length: 214)
Name: NF0924_low_38
Description: NF0924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0924_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 33717672 - 33717547
Alignment:
| Q |
1 |
caaattcatatttcaacccacaaatagtaatggatccacacacaatgtaaacaaattataaaatgtaactaacatagactatttcaaagaatttacacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33717672 |
caaattcatatttcaacccacaaatagtaatggatccacaaa--atgtaaacaaattataaaatgtaactaacatagactatttcaaagaatttacacat |
33717575 |
T |
|
| Q |
101 |
gttttgcacagaatcacaattagttcat |
128 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
33717574 |
gttttgcacagaatcacaattagttcat |
33717547 |
T |
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