View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0924_low_4 (Length: 488)

Name: NF0924_low_4
Description: NF0924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0924_low_4
NF0924_low_4
[»] chr4 (7 HSPs)
chr4 (30-291)||(44870182-44870435)
chr4 (289-464)||(44869972-44870147)
chr4 (196-284)||(44859247-44859335)
chr4 (364-425)||(44859086-44859147)
chr4 (365-421)||(44833739-44833795)
chr4 (98-162)||(44859598-44859663)
chr4 (365-421)||(44846439-44846495)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 30 - 291
Target Start/End: Complemental strand, 44870435 - 44870182
Alignment:
Q  30 cactgaacaggtgtgtgcgcttacaaattttgaacattaattttatatgctcnnnnnnnnnnnctttctgatttccaagctgttcaaaacagaactgaag 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||    
T  44870435 cactgaacaggtgtgtgcgcttacaaattttgaacattaattttatatgctctttt--------tttctgatttccaagctgttcaaaacagaactgaag 44870344  T
Q  130 acttggttcaagtcaacaaccacaagaataaaatatcaaatgtccccccttctcacagatagcagaaattgtcaagcattttgcagccataaggacatac 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44870343 acttggttcaagtcaacaaccacaagaataaaatatcaaatgtcccccctcctcacagatagcagaaattgtcaagcattttgcagccataaggacatac 44870244  T
Q  230 ttccatataaacacatcaagtcctgtgtctacacggctcatggaaacataaagaatggcaca 291  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  44870243 ttccatataaacacatccagtcctgtgtctacacggctcatggaaacataaagaatggcaca 44870182  T

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Target: chr4; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 289 - 464
Target Start/End: Complemental strand, 44870147 - 44869972
Alignment:
Q  289 acagaaacacctgttgattcaatttcatatccgttatcatacatagacattacaatgttccgtacctatcaggttaggaaatgagaatccagagttgttt 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44870147 acagaaacacctgttgattcaatttcatatccgttatcatacatagacattacaatgttccgtacctatcaggttaggaaatgagaatccagaattgttt 44870048  T
Q  389 tgagggcactgagtttgtagataaaaattgggaagactgggacccggcatcgacaaaagagcaggatcaaaattta 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44870047 tgagggcactgagtttgtagataaaaattgggaagactgggacccggcatcgacaaaagagcaggatcaaaattta 44869972  T

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Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 196 - 284
Target Start/End: Complemental strand, 44859335 - 44859247
Alignment:
Q  196 aattgtcaagcattttgcagccataaggacatacttccatataaacacatcaagtcctgtgtctacacggctcatggaaacataaagaa 284  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||  |||||| ||||    
T  44859335 aattgtcaagcattgtgcagccataaggacatatttccatataaacacatctagtcctgtgtctacacggctcatgctaacatacagaa 44859247  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 364 - 425
Target Start/End: Complemental strand, 44859147 - 44859086
Alignment:
Q  364 aggaaatgagaatccagagttgttttgagggcactgagtttgtagataaaaattgggaagac 425  Q
    |||||||||||||||||||||||| | ||||||||||| ||||||||||||| |||||||||    
T  44859147 aggaaatgagaatccagagttgttcttagggcactgagattgtagataaaaaatgggaagac 44859086  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 365 - 421
Target Start/End: Complemental strand, 44833795 - 44833739
Alignment:
Q  365 ggaaatgagaatccagagttgttttgagggcactgagtttgtagataaaaattggga 421  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  44833795 ggaaataagaatccagagttgttttgagggcactgagtttgtagattaaaaatggga 44833739  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 44859663 - 44859598
Alignment:
Q  98 tgatttccaagctgttcaaaacagaactgaagactt-ggttcaagtcaacaaccacaagaataaaa 162  Q
    |||| |||||||||||||||||| ||  |||||||| |||||||||||||||||||||||||||||    
T  44859663 tgatgtccaagctgttcaaaacacaaaggaagacttaggttcaagtcaacaaccacaagaataaaa 44859598  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 421
Target Start/End: Complemental strand, 44846495 - 44846439
Alignment:
Q  365 ggaaatgagaatccagagttgttttgagggcactgagtttgtagataaaaattggga 421  Q
    ||||||||| ||||| ||||||   |||||||||||||||||||||||||| |||||    
T  44846495 ggaaatgagtatccaaagttgtaccgagggcactgagtttgtagataaaaaatggga 44846439  T

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