View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0924_low_42 (Length: 208)
Name: NF0924_low_42
Description: NF0924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0924_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 30 - 189
Target Start/End: Complemental strand, 40451896 - 40451737
Alignment:
| Q |
30 |
gtccaccatcttccataccttttcttgggcaatcaagcatatctcatcaatgaatcattacacgaaaagatgaaaaatctcatcaatgaatcatcatcac |
129 |
Q |
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| T |
40451896 |
gtccaccatcttccataccttttcttgggcaatcaagcatatctcatcaatgaatcattacacgaaaagatgaaaaatctcatcaatgaatcatcatcac |
40451797 |
T |
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| Q |
130 |
tcaaaatggagaaaaatattagtgacttacccgataacattattcacgacattctttcat |
189 |
Q |
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| T |
40451796 |
tcaaaatggagaaaaatattagtgacttacccgataacattcttcaccatattctttcat |
40451737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 40275855 - 40275904
Alignment:
| Q |
38 |
tcttccataccttttcttgggcaatcaagcatatctcatcaatgaatcat |
87 |
Q |
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| T |
40275855 |
tcttccataccttgttttggggagtaaagcatatctcatcaatgaatcat |
40275904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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