View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0924_low_6 (Length: 455)

Name: NF0924_low_6
Description: NF0924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0924_low_6
NF0924_low_6
[»] chr3 (10 HSPs)
chr3 (37-329)||(10104543-10104835)
chr3 (37-329)||(10225316-10225612)
chr3 (37-303)||(10215717-10215983)
chr3 (345-443)||(10215618-10215716)
chr3 (38-189)||(45926734-45926886)
chr3 (241-329)||(10055666-10055754)
chr3 (37-189)||(46749392-46749545)
chr3 (326-359)||(10104543-10104576)
chr3 (326-359)||(10055666-10055699)
chr3 (326-359)||(10225316-10225349)
[»] chr5 (8 HSPs)
chr5 (37-329)||(26795158-26795454)
chr5 (38-213)||(28594208-28594382)
chr5 (54-189)||(27786362-27786498)
chr5 (37-113)||(26806442-26806518)
chr5 (363-443)||(34500846-34500928)
chr5 (37-189)||(9689134-9689287)
chr5 (326-359)||(26795158-26795191)
chr5 (214-286)||(28594123-28594195)
[»] chr2 (1 HSPs)
chr2 (37-253)||(37981763-37981977)
[»] chr4 (5 HSPs)
chr4 (37-253)||(53594228-53594441)
chr4 (54-189)||(37370676-37370812)
chr4 (39-189)||(28100371-28100522)
chr4 (54-189)||(41762137-41762273)
chr4 (37-165)||(38230914-38231043)
[»] chr8 (1 HSPs)
chr8 (59-189)||(24318080-24318211)
[»] scaffold0287 (1 HSPs)
scaffold0287 (37-189)||(11586-11739)
[»] chr7 (8 HSPs)
chr7 (37-189)||(3634346-3634499)
chr7 (37-99)||(9598945-9599007)
chr7 (135-189)||(9825217-9825271)
chr7 (37-99)||(9826516-9826578)
chr7 (135-189)||(10727142-10727196)
chr7 (37-165)||(46037163-46037292)
chr7 (38-79)||(48999080-48999121)
chr7 (37-129)||(37042413-37042505)
[»] chr1 (4 HSPs)
chr1 (54-213)||(42657874-42658031)
chr1 (37-189)||(27198413-27198566)
chr1 (37-165)||(48194732-48194861)
chr1 (37-165)||(48203490-48203619)
[»] chr6 (3 HSPs)
chr6 (37-165)||(7100306-7100435)
chr6 (37-165)||(8794195-8794324)
chr6 (37-81)||(11007622-11007666)


Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 37 - 329
Target Start/End: Complemental strand, 10104835 - 10104543
Alignment:
Q  37 gcaacgaaatccattgatattcaattaggatttctcacaacttataaaatgtccttgggtattcaaaaattgatagatttcgatgagttctttatgggat 136  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| | |||||||||||||    
T  10104835 gcaacgaaatccattggtattcaattaggatttctcacaacttataaaatgtctttgggtattcaaaaattgatagacttcgattaattctttatgggat 10104736  T
Q  137 ggattttgtgagacttcttgattaaaaatgtgaacaaaatgctcattcaacaaacaatctcacaaatttgtgagactcacaattttcttatccttgctgt 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10104735 ggattttgtgagacttcttgattaaaaatgtgaacaaaatgctcattcaacaaacaatgtcacaaatttgtgagactcacaattttcttatccttgctgt 10104636  T
Q  237 ccaccgagattcattttcccattagttttaagatgcatagaacattattccaggtgaacattattttgggtgtagaaaactttcggtcaatat 329  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10104635 ccaccgagattcattttcccattagtttcaagatgcatagaacattattccaggtgaacattattttgggtgtagaaaactttcggtcaatat 10104543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 37 - 329
Target Start/End: Complemental strand, 10225612 - 10225316
Alignment:
Q  37 gcaacgaaatccattgatattcaattaggatttctcacaacttataaaatgtccttgggtattcaaaaattgatagatttcgatgagttctttatgggat 136  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  10225612 gcaacgaaatccattggtattcaattaggatttctcacaacttataaaatgtccttgggtattcaaaaattgatagatttcgatgaattctttatgtgat 10225513  T
Q  137 ggattttgtgagacttcttgattaaaaatgtgaacaaaatgctcattcaacaaacaatctcacaaatttgtgagactcacaattttcttatccttgctgt 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10225512 ggattttgtgagacttcttgattaaaaatgtgaacaaaatgctcattcaacaaacaatctcacaaatttgtgagactcacaattttcttatccttgctgt 10225413  T
Q  237 ccaccgagattcattttccc----attagttttaagatgcatagaacattattccaggtgaacattattttgggtgtagaaaactttcggtcaatat 329  Q
    ||| ||||||||||||||||    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  10225412 ccaacgagattcattttcccattaattagtttcaagatgcatagaacattattccagttgaacattattttgggtgtagaaaactttcagtcaatat 10225316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 37 - 303
Target Start/End: Complemental strand, 10215983 - 10215717
Alignment:
Q  37 gcaacgaaatccattgatattcaattaggatttctcacaacttataaaatgtccttgggtattcaaaaattgatagatttcgatgagttctttatgggat 136  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10215983 gcaacgaaatccattggtattcaattaggatttctcacaacttataaaatgtccttgggtattcaaaaattgatagatttcgatgaattctttatgggat 10215884  T
Q  137 ggattttgtgagacttcttgattaaaaatgtgaacaaaatgctcattcaacaaacaatctcacaaatttgtgagactcacaattttcttatccttgctgt 236  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10215883 ggattttgtaagacttcttgattaaaaatgtgaacaaaatgctcatttaacaaacaatctcacaaatttgtgagactcacaattttcttatccttgctgt 10215784  T
Q  237 ccaccgagattcattttcccattagttttaagatgcatagaacattattccaggtgaacattatttt 303  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  10215783 ccaccgagattcattttcccattagtttcaagatgcatagaacattatttcaggtgaacattatttt 10215717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 345 - 443
Target Start/End: Complemental strand, 10215716 - 10215618
Alignment:
Q  345 tacacccaaaataattttggaggagaactcgcacagatctggaaagtttgtaagaggcagactgagaaatttgggttgttttgcgtttagagcaatatt 443  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10215716 tacacccaaaataattttggaggagaactcgcacagatctggaaagtttgtgagaggcagactgagaaatttgggttgttttgcgtttagagcaatatt 10215618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 38 - 189
Target Start/End: Complemental strand, 45926886 - 45926734
Alignment:
Q  38 caacgaaatccattgatattcaattaggatttctcacaacttataaaatgtccttgggtattcaaaaattgatagatttcgatgagttc-tttatgggat 136  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||  |||  ||| ||||||  |     
T  45926886 caacgaaatccgttggtattcaattaggatttctcacaacttataaaatctcattcggtattcaaaaattgatagattttaatggattcttttatgcaac 45926787  T
Q  137 ggattttgtgagacttcttgattaaaaatgtgaacaaaatgctcattcaacaa 189  Q
    | |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  45926786 gtattttgtgagactttttgattaaaaatgtgaacaaaatgctcattcaacaa 45926734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 241 - 329
Target Start/End: Complemental strand, 10055754 - 10055666
Alignment:
Q  241 cgagattcattttcccattagttttaagatgcatagaacattattccaggtgaacattattttgggtgtagaaaactttcggtcaatat 329  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10055754 cgagattcattttcccattagtttcaagatgcatagaacattattccaggtgaacattattttgggtgtagaaaactttcagtcaatat 10055666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 37 - 189
Target Start/End: Original strand, 46749392 - 46749545
Alignment:
Q  37 gcaacgaaatccattgatattcaattaggatttctcacaacttataaaatgtccttgggtatt-caaaaattgatagatttcgatgagttctttatggga 135  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||  | | ||||  ||||||| |||||||| ||||  || |||||||      
T  46749392 gcaacgaaatccgttgatattcaattaagatttctcacaacttataaaatgtctgttgctattaaaaaaattaatagattttgatggattttttatggag 46749491  T
Q  136 tggattttgtgagacttcttgattaaaaatgtgaacaaaatgctcattcaacaa 189  Q
    ||||||||| ||||||| || ||||||||||| |||| | | |||||| |||||    
T  46749492 tggattttgagagactttttaattaaaaatgtcaacacacttctcatttaacaa 46749545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 326 - 359
Target Start/End: Original strand, 10104543 - 10104576
Alignment:
Q  326 atattgaccgaaagttttctacacccaaaataat 359  Q
    ||||||||||||||||||||||||||||||||||    
T  10104543 atattgaccgaaagttttctacacccaaaataat 10104576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 359
Target Start/End: Original strand, 10055666 - 10055699
Alignment:
Q  326 atattgaccgaaagttttctacacccaaaataat 359  Q
    |||||||| |||||||||||||||||||||||||    
T  10055666 atattgactgaaagttttctacacccaaaataat 10055699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 359
Target Start/End: Original strand, 10225316 - 10225349
Alignment:
Q  326 atattgaccgaaagttttctacacccaaaataat 359  Q
    |||||||| |||||||||||||||||||||||||    
T  10225316 atattgactgaaagttttctacacccaaaataat 10225349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 37 - 329
Target Start/End: Complemental strand, 26795454 - 26795158
Alignment:
Q  37 gcaacgaaatccattgatattcaattaggatttctcacaacttataaaatgtccttgggtattcaaaaattgatagatttcgatgagttctttatgggat 136  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| | |||||||||||||    
T  26795454 gcaacgaaatccattggtattcaattaggatttctcacaacttataaaatgtctttgggtattcaaaaattgatagacttcgattaattctttatgggat 26795355  T
Q  137 ggattttgtgagacttcttgattaaaaatgtgaacaaaatgctcattcaacaaacaatctcacaaatttgtgagactcacaattttcttatccttgctgt 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26795354 ggattttgtgagacttcttgattaaaaatgtgaacaaaatgctcattcaacaaacaatctcacaaatttgtgagactcacaattttcttatccttgctgt 26795255  T
Q  237 ccaccgagattcattttccc----attagttttaagatgcatagaacattattccaggtgaacattattttgggtgtagaaaactttcggtcaatat 329  Q
    ||| ||||||||||||||||    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  26795254 ccaacgagattcattttcccattaattagtttcaagatgcatagaacattattccagttgaacattattttgggtgtagaaaactttcagtcaatat 26795158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 38 - 213
Target Start/End: Complemental strand, 28594382 - 28594208
Alignment:
Q  38 caacgaaatccattgatattcaattaggatttctcacaacttataaaatgtccttgggtattcaaaaattgatagatttcgatgagttc-tttatgggat 136  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||  |||  ||| |||||   ||    
T  28594382 caacgaaatccgttggtattcaattaggatttctcacaacttataaaatgtctttcggtattcaaaaattgatagattttaatggattcttttatataat 28594283  T
Q  137 ggattttgtgagacttcttgattaaaaatgtgaacaaaatgctcattcaacaaacaatctcacaaatttgtgagact 213  Q
    |||||||||||||||| ||  ||||||||||||| |||||||||||||||||| |  || || ||||||||||||||    
T  28594282 ggattttgtgagactttttagttaaaaatgtgaataaaatgctcattcaacaatc--tcacaaaaatttgtgagact 28594208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 54 - 189
Target Start/End: Original strand, 27786362 - 27786498
Alignment:
Q  54 tattcaattaggatttctcacaacttataaaatgtccttgggtattcaaaaattgatagatttcgatgagttc-tttatgggatggattttgtgagactt 152  Q
    |||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||  |||  ||| ||||||| ||||||||||||||||||    
T  27786362 tattcaattatgatttctcacaacttataaaatgtcattcggtattcaaaaattgatagattttaatggattcttttatggaatggattttgtgagactt 27786461  T
Q  153 cttgattaaaaatgtgaacaaaatgctcattcaacaa 189  Q
     ||  ||||||||||||||||||||||||||||||||    
T  27786462 tttagttaaaaatgtgaacaaaatgctcattcaacaa 27786498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 26806518 - 26806442
Alignment:
Q  37 gcaacgaaatccattgatattcaattaggatttctcacaacttataaaatgtccttgggtattcaaaaattgataga 113  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26806518 gcaacgaaatccattggtattcaattaggatttctcacaacttataaaatgtctttgggtattcaaaaattgataga 26806442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 363 - 443
Target Start/End: Complemental strand, 34500928 - 34500846
Alignment:
Q  363 ggaggagaactcgcacagatctggaaagtttgtaagaggcagactgagaaatttgg--gttgttttgcgtttagagcaatatt 443  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||   || |||||||||||||||||||||    
T  34500928 ggaggagaactcgcacagatctagaaagtttgtgagaggcagactgagaaatttggatttttttttgcgtttagagcaatatt 34500846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 189
Target Start/End: Complemental strand, 9689287 - 9689134
Alignment:
Q  37 gcaacgaaatccattgatattcaattaggatttctcacaacttataaaatgtccttgggtattcaaaaattgatagatttcgatgagttctt-tatggga 135  Q
    |||||||||||| ||| |||||||||  |||||||||  ||||||||||||||| | | |||||||||||  ||||||||  |||  || ||  ||||      
T  9689287 gcaacgaaatccgttggtattcaattgagatttctcattacttataaaatgtccattgatattcaaaaatacatagattttaatggattattggatggag 9689188  T
Q  136 tggattttgtgagacttcttgattaaaaatgtgaacaaaatgctcattcaacaa 189  Q
    || |||||||||||||| ||  |||||||| | |||||||| ||||||||||||    
T  9689187 tgaattttgtgagactttttagttaaaaatataaacaaaatactcattcaacaa 9689134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 359
Target Start/End: Original strand, 26795158 - 26795191
Alignment:
Q  326 atattgaccgaaagttttctacacccaaaataat 359  Q
    |||||||| |||||||||||||||||||||||||    
T  26795158 atattgactgaaagttttctacacccaaaataat 26795191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 286
Target Start/End: Complemental strand, 28594195 - 28594123
Alignment:
Q  214 cacaattttcttatccttgctgtccaccgagattcattttcccattagttttaagatgcatagaacattattc 286  Q
    |||||| ||||| ||| ||||||||| ||||| |||||||| ||||| |||  |||||||  |||||||||||    
T  28594195 cacaatattcttttccatgctgtccaacgagaatcattttctcattaatttccagatgcacggaacattattc 28594123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 9e-68; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 37 - 253
Target Start/End: Original strand, 37981763 - 37981977
Alignment:
Q  37 gcaacgaaatccattgatattcaattaggatttctcacaacttataaaatgtccttgggtattcaaaaattgatagatttcgatgagttc-tttatggga 135  Q
    |||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||  ||| ||||||| |    
T  37981763 gcaatgaaatccgttggtattcaattaggatttctcacaacttataaaatgtccttaggtattcaaaaattgatagattttgatggattcttttatggaa 37981862  T
Q  136 tggattttgtgagacttcttgattaaaaatgtgaacaaaatgctcattcaacaaacaatctcacaaatttgtgagactcacaattttcttatccttgctg 235  Q
    | || |||||||||||| || ||||||||||||||||||||||||||||||||| |  || ||||||||||||||||||||||||||||| |||||||||    
T  37981863 tagaatttgtgagactt-ttaattaaaaatgtgaacaaaatgctcattcaacaatc--tcacacaaatttgtgagactcacaattttcttttccttgctg 37981959  T
Q  236 tccaccgagattcatttt 253  Q
    |||| |||||||||||||    
T  37981960 tccaacgagattcatttt 37981977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 8e-65; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 37 - 253
Target Start/End: Original strand, 53594228 - 53594441
Alignment:
Q  37 gcaacgaaatccattgatattcaattaggatttctcacaacttataaaatgtccttgggtattcaaaaattgatagatttcgat-gagttctttatggga 135  Q
    |||| ||||||| ||| |||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||| ||| || || ||||||| |    
T  53594228 gcaatgaaatccgttggtattcaattaggatttctcacaacttataaaatgtctttcggtattaaaaaattgatagattttgatggatttttttatggaa 53594327  T
Q  136 tggattttgtgagacttcttgattaaaaatgtgaacaaaatgctcattcaacaaacaatctc--acaaatttgtgagactcacaattttcttatccttgc 233  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||      ||||||  |||||||||||||||||||||||||||| |||||||    
T  53594328 tggattttgtgagactttttgattaaaaatgtgaacaaaatgctcattca------aatctcagacaaatttgtgagactcacaattttcttttccttgc 53594421  T
Q  234 tgtccaccgagattcatttt 253  Q
    |||||| |||||||||||||    
T  53594422 tgtccaacgagattcatttt 53594441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 54 - 189
Target Start/End: Complemental strand, 37370812 - 37370676
Alignment:
Q  54 tattcaattaggatttctcacaacttataaaatgtccttgggtattcaaaaattgatagatttcgatgagttc-tttatgggatggattttgtgagactt 152  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||  |||  ||| ||||||| ||||||||||||||||||    
T  37370812 tattcaattaagatttctcacaacttataaaatgtccttcggtattcaaaaattgatagattttaatggattcttttatggaatggattttgtgagactt 37370713  T
Q  153 cttgattaaaaatgtgaacaaaatgctcattcaacaa 189  Q
      |  ||||||||||||||||||| ||||||||||||    
T  37370712 tatagttaaaaatgtgaacaaaatactcattcaacaa 37370676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 39 - 189
Target Start/End: Complemental strand, 28100522 - 28100371
Alignment:
Q  39 aacgaaatccattgatattcaattaggatttctcacaacttataaaatgtccttgggtattcaaaaattgatagatttcgatgagttc-tttatgggatg 137  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||| ||  ||||||||||||| |||||||| ||||  ||| ||||||| |||    
T  28100522 aacgaaatccgttgatattcaattaagatttctcacaacttataaaatgtcttttagtattcaaaaattaatagattttgatggattcttttatggaatg 28100423  T
Q  138 gattttgtgagacttcttgattaaaaatgtgaacaaaatgctcattcaacaa 189  Q
    ||||||| ||||||| ||  ||||||||||||||| | | ||||||||||||    
T  28100422 gattttgagagactttttagttaaaaatgtgaacacactactcattcaacaa 28100371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 54 - 189
Target Start/End: Original strand, 41762137 - 41762273
Alignment:
Q  54 tattcaattaggatttctcacaacttataaaatgtccttgggtattcaaaaattgatagatttcgatgagttc-tttatgggatggattttgtgagactt 152  Q
    |||||||||||||||||||||||||||||||||||| || |||||| |||| || || ||| | ||||| ||| |||||||  |||||||||||| | ||    
T  41762137 tattcaattaggatttctcacaacttataaaatgtcttttggtatttaaaattttatggatattgatgaattcttttatggagtggattttgtgaaattt 41762236  T
Q  153 cttgattaaaaatgtgaacaaaatgctcattcaacaa 189  Q
     ||  ||||||||||||||| ||| || |||||||||    
T  41762237 tttagttaaaaatgtgaacacaatacttattcaacaa 41762273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 165
Target Start/End: Original strand, 38230914 - 38231043
Alignment:
Q  37 gcaacgaaatccattgatattcaattaggatttctcacaacttataaaatgtccttgggtattcaaaaattgatagatttcgatgagttctt-tatggga 135  Q
    ||||| |||||| ||| |||||||||  |||||||||  |||||| || ||||| | ||||||||||| |  |||||||| ||||  |||||  |||| |    
T  38230914 gcaacaaaatccgttggtattcaattgagatttctcatgacttatgaattgtccattggtattcaaaagtctatagattttgatggattcttggatggaa 38231013  T
Q  136 tggattttgtgagacttcttgattaaaaat 165  Q
    ||||||||||||||||| ||  ||||||||    
T  38231014 tggattttgtgagactttttagttaaaaat 38231043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 24318080 - 24318211
Alignment:
Q  59 aattaggatttctcacaacttataaaatgtccttgggtattcaaaaattgatagatttcgatgagttc-tttatgggatggattttgtgagacttcttga 157  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||  ||| ||||||| |||||||||||||||||| |||     
T  24318080 aattaggatttctcacaacttataaaatgtctttcggtattcaaaaattgatagattttgatggattcttttatggaatggattttgtgagactttttgg 24318179  T
Q  158 ttaaaaatgtgaacaaaatgctcattcaacaa 189  Q
    ||||||||||||||||||||||||||||||||    
T  24318180 ttaaaaatgtgaacaaaatgctcattcaacaa 24318211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 37 - 189
Target Start/End: Complemental strand, 11739 - 11586
Alignment:
Q  37 gcaacgaaatccattgatattcaattaggatttctcacaacttataaaatgtccttgggtattcaaaaattgatagatttcgatgagttc-tttatggga 135  Q
    |||||| ||||| ||| |||||||||| ||||||||||||||||||||||||  || |||||||||||||| || ||||| ||||  ||| ||||||| |    
T  11739 gcaacggaatccgttggtattcaattaagatttctcacaacttataaaatgtattttggtattcaaaaattaattgattttgatggattcttttatggaa 11640  T
Q  136 tggattttgtgagacttcttgattaaaaatgtgaacaaaatgctcattcaacaa 189  Q
    ||||||||| ||||||| ||  ||||||||||||||| | | ||||||||||||    
T  11639 tggattttgagagactttttagttaaaaatgtgaacacattcctcattcaacaa 11586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 37 - 189
Target Start/End: Original strand, 3634346 - 3634499
Alignment:
Q  37 gcaacgaaatccattgatattcaattaggatttctcacaacttataaaatgtccttgggtattcaaaaattgatagatttcgatgagttc-tttatggga 135  Q
    |||||| ||||| ||| |||||||||| ||||||||||||||||||||||||  || |||||||||||||| || ||||| ||||  ||| ||||||| |    
T  3634346 gcaacggaatccgttggtattcaattaagatttctcacaacttataaaatgtattttggtattcaaaaattaattgattttgatggattcttttatggaa 3634445  T
Q  136 tggattttgtgagacttcttgattaaaaatgtgaacaaaatgctcattcaacaa 189  Q
    ||||||||| ||||||| ||  ||||||||||||||| | | ||||||||||||    
T  3634446 tggattttgagagactttttagttaaaaatgtgaacacattcctcattcaacaa 3634499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 9599007 - 9598945
Alignment:
Q  37 gcaacgaaatccattgatattcaattaggatttctcacaacttataaaatgtccttgggtatt 99  Q
    |||||||||||| ||  || ||||||| |||||||||||||||||||||| ||| | ||||||    
T  9599007 gcaacgaaatccgttagtagtcaattatgatttctcacaacttataaaatatccattggtatt 9598945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 9825271 - 9825217
Alignment:
Q  135 atggattttgtgagacttcttgattaaaaatgtgaacaaaatgctcattcaacaa 189  Q
    ||||||||| |||||||| || |||||||||||||||| ||| || |||||||||    
T  9825271 atggattttatgagactttttaattaaaaatgtgaacataatacttattcaacaa 9825217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 9826578 - 9826516
Alignment:
Q  37 gcaacgaaatccattgatattcaattaggatttctcacaacttataaaatgtccttgggtatt 99  Q
    |||||||||||| ||  || ||||||| |||||||||||||||||||||| ||| | ||||||    
T  9826578 gcaacgaaatccgttagtagtcaattatgatttctcacaacttataaaatatccattggtatt 9826516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 10727196 - 10727142
Alignment:
Q  135 atggattttgtgagacttcttgattaaaaatgtgaacaaaatgctcattcaacaa 189  Q
    ||||||||| |||||||| || |||||||||||||||| ||| || |||||||||    
T  10727196 atggattttatgagactttttaattaaaaatgtgaacataatacttattcaacaa 10727142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 165
Target Start/End: Complemental strand, 46037292 - 46037163
Alignment:
Q  37 gcaacgaaatccattgatattcaattaggatttctcacaacttataaaatgtccttgggtattcaaaaattgatagatttcgatgagttctt-tatggga 135  Q
    ||||| |||||| ||| |||||||||  |||||||||  |||||| || ||||  | ||||||||||| |  |||||||| ||||  |||||  |||| |    
T  46037292 gcaacaaaatccgttggtattcaattgagatttctcatgacttatgaattgtctattggtattcaaaagtctatagattttgatggattcttggatggaa 46037193  T
Q  136 tggattttgtgagacttcttgattaaaaat 165  Q
    ||||||||||||||||| ||  ||||||||    
T  46037192 tggattttgtgagactttttagttaaaaat 46037163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 48999080 - 48999121
Alignment:
Q  38 caacgaaatccattgatattcaattaggatttctcacaactt 79  Q
    |||||||||||||||||||||||||   ||||||||||||||    
T  48999080 caacgaaatccattgatattcaattgaaatttctcacaactt 48999121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 37042505 - 37042413
Alignment:
Q  37 gcaacgaaatccattgatattcaattaggatttctcacaacttataaaatgtccttgggtattcaaaaattgatagatttcgatgagttcttt 129  Q
    ||||||||||||  |  |||||||||| |||||||||||||||||||| | ||    |||||||||||||  ||||||||  |||| ||||||    
T  37042505 gcaacgaaatccggtagtattcaattaagatttctcacaacttataaattatctcatggtattcaaaaatacatagatttaaatgaattcttt 37042413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 54 - 213
Target Start/End: Original strand, 42657874 - 42658031
Alignment:
Q  54 tattcaattaggatttctcacaacttataaaatgtccttgggtattcaaaaattgatagatttcgatgagttctt-tatgggatggattttgtgagactt 152  Q
    |||||||||||||||| |||||||||||||||||||| | |||||||||||||  | |||||| ||||  ||||| ||||| ||||||||| ||||||||    
T  42657874 tattcaattaggatttttcacaacttataaaatgtccattggtattcaaaaatcta-agattttgatggattcttctatggaatggattttatgagactt 42657972  T
Q  153 cttgattaaaaatgtgaacaaaatgctcattcaacaaacaatctcacaaatttgtgagact 213  Q
     ||  ||||||||||||||| ||| |||||||||||| |  || || ||||||||||||||    
T  42657973 tttagttaaaaatgtgaacacaatactcattcaacaatc--tcacaaaaatttgtgagact 42658031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 189
Target Start/End: Original strand, 27198413 - 27198566
Alignment:
Q  37 gcaacgaaatccattgatattcaattaggatttctcacaacttataaaatgtccttgggtattcaaaaattgatagatttcgatgagttcttt-atggga 135  Q
    |||||||||||| ||| |||| ||||  |||||||||  |||| |||||||||| | |||||||||||||  ||||||||  |||  |||||| || |      
T  27198413 gcaacgaaatccgttggtattgaattgagatttctcattacttctaaaatgtccattggtattcaaaaatatatagattttaatggattcttttatagag 27198512  T
Q  136 tggattttgtgagacttcttgattaaaaatgtgaacaaaatgctcattcaacaa 189  Q
    | ||||||||||||||||||  |||||||| |||||||||| ||||||||||||    
T  27198513 ttgattttgtgagacttcttagttaaaaatatgaacaaaatactcattcaacaa 27198566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 165
Target Start/End: Original strand, 48194732 - 48194861
Alignment:
Q  37 gcaacgaaatccattgatattcaattaggatttctcacaacttataaaatgtccttgggtattcaaaaattgatagatttcgatgagttctt-tatggga 135  Q
    ||||| |||||| ||| |||||||||  |||||||||  |||||| || ||||| | ||||||||||| |  |||||||| ||||  |||||  |||| |    
T  48194732 gcaacaaaatccgttggtattcaattgagatttctcatgacttatgaattgtccattggtattcaaaagtctatagattttgatggattcttggatggaa 48194831  T
Q  136 tggattttgtgagacttcttgattaaaaat 165  Q
    ||||||||||||||||| ||  ||||||||    
T  48194832 tggattttgtgagactttttagttaaaaat 48194861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 165
Target Start/End: Original strand, 48203490 - 48203619
Alignment:
Q  37 gcaacgaaatccattgatattcaattaggatttctcacaacttataaaatgtccttgggtattcaaaaattgatagatttcgatgagttctt-tatggga 135  Q
    ||||| |||||| ||| |||||||||  |||||||||  |||||| || ||||| | ||||||||||| |  |||||||| ||||  |||||  |||| |    
T  48203490 gcaacaaaatccgttggtattcaattgagatttctcatgacttatgaattgtccataggtattcaaaagtctatagattttgatggattcttggatggaa 48203589  T
Q  136 tggattttgtgagacttcttgattaaaaat 165  Q
    ||||||||||||||||| ||  ||||||||    
T  48203590 tggattttgtgagactttttagttaaaaat 48203619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 165
Target Start/End: Original strand, 7100306 - 7100435
Alignment:
Q  37 gcaacgaaatccattgatattcaattaggatttctcacaacttataaaatgtccttgggtattcaaaaattgatagatttcgatgagttctt-tatggga 135  Q
    ||||| |||||| ||| |||||||||  |||||||||  |||||| || ||||| | ||||||||||| |  |||||||| ||||  |||||  |||| |    
T  7100306 gcaacaaaatccgttggtattcaattgagatttctcatgacttatgaattgtccattggtattcaaaagtctatagattttgatggattcttggatggaa 7100405  T
Q  136 tggattttgtgagacttcttgattaaaaat 165  Q
    ||||||||||||||||| ||  ||||||||    
T  7100406 tggattttgtgagactttttagttaaaaat 7100435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 165
Target Start/End: Complemental strand, 8794324 - 8794195
Alignment:
Q  37 gcaacgaaatccattgatattcaattaggatttctcacaacttataaaatgtccttgggtattcaaaaattgatagatttcgatgagttctt-tatggga 135  Q
    ||||| |||||| ||| |||||||||  |||||||||  |||||| || ||||| | ||||||||||| |  |||||||| ||||  |||||  |||| |    
T  8794324 gcaacaaaatccgttggtattcaattgagatttctcatgacttatgaattgtccattggtattcaaaagtctatagattttgatggattcttggatggaa 8794225  T
Q  136 tggattttgtgagacttcttgattaaaaat 165  Q
    ||||||||||||||||| ||  ||||||||    
T  8794224 tggattttgtgagactttttagttaaaaat 8794195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 11007666 - 11007622
Alignment:
Q  37 gcaacgaaatccattgatattcaattaggatttctcacaacttat 81  Q
    |||||||||||  ||| |||||||||||||||||||||| |||||    
T  11007666 gcaacgaaatctgttggtattcaattaggatttctcacagcttat 11007622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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