View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0924_low_7 (Length: 455)

Name: NF0924_low_7
Description: NF0924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0924_low_7
NF0924_low_7
[»] chr3 (10 HSPs)
chr3 (127-419)||(10104543-10104835)
chr3 (127-419)||(10225316-10225612)
chr3 (153-419)||(10215717-10215983)
chr3 (10-111)||(10215615-10215716)
chr3 (267-418)||(45926734-45926886)
chr3 (127-215)||(10055666-10055754)
chr3 (267-419)||(46749392-46749545)
chr3 (97-130)||(10104543-10104576)
chr3 (97-130)||(10055666-10055699)
chr3 (97-130)||(10225316-10225349)
[»] chr5 (8 HSPs)
chr5 (127-419)||(26795158-26795454)
chr5 (243-418)||(28594208-28594382)
chr5 (267-402)||(27786362-27786498)
chr5 (343-419)||(26806442-26806518)
chr5 (13-93)||(34500846-34500928)
chr5 (267-419)||(9689134-9689287)
chr5 (97-130)||(26795158-26795191)
chr5 (170-242)||(28594123-28594195)
[»] chr2 (1 HSPs)
chr2 (203-419)||(37981763-37981977)
[»] chr4 (5 HSPs)
chr4 (203-419)||(53594228-53594441)
chr4 (267-402)||(37370676-37370812)
chr4 (267-417)||(28100371-28100522)
chr4 (267-402)||(41762137-41762273)
chr4 (291-419)||(38230914-38231043)
[»] chr8 (1 HSPs)
chr8 (267-397)||(24318080-24318211)
[»] scaffold0287 (1 HSPs)
scaffold0287 (267-419)||(11586-11739)
[»] chr7 (8 HSPs)
chr7 (267-419)||(3634346-3634499)
chr7 (357-419)||(9598945-9599007)
chr7 (267-321)||(9825217-9825271)
chr7 (357-419)||(9826516-9826578)
chr7 (267-321)||(10727142-10727196)
chr7 (291-419)||(46037163-46037292)
chr7 (377-418)||(48999080-48999121)
chr7 (327-419)||(37042413-37042505)
[»] chr1 (4 HSPs)
chr1 (243-402)||(42657874-42658031)
chr1 (267-419)||(27198413-27198566)
chr1 (291-419)||(48194732-48194861)
chr1 (291-419)||(48203490-48203619)
[»] chr6 (3 HSPs)
chr6 (291-419)||(7100306-7100435)
chr6 (291-419)||(8794195-8794324)
chr6 (375-419)||(11007622-11007666)


Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 127 - 419
Target Start/End: Original strand, 10104543 - 10104835
Alignment:
Q  127 atattgaccgaaagttttctacacccaaaataatgttcacctggaataatgttctatgcatcttaaaactaatgggaaaatgaatctcggtggacagcaa 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10104543 atattgaccgaaagttttctacacccaaaataatgttcacctggaataatgttctatgcatcttgaaactaatgggaaaatgaatctcggtggacagcaa 10104642  T
Q  227 ggataagaaaattgtgagtctcacaaatttgtgagattgtttgttgaatgagcattttgttcacatttttaatcaagaagtctcacaaaatccatcccat 326  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10104643 ggataagaaaattgtgagtctcacaaatttgtgacattgtttgttgaatgagcattttgttcacatttttaatcaagaagtctcacaaaatccatcccat 10104742  T
Q  327 aaagaactcatcgaaatctatcaatttttgaatacccaaggacattttataagttgtgagaaatcctaattgaatatcaatggatttcgttgc 419  Q
    |||||| | |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10104743 aaagaattaatcgaagtctatcaatttttgaatacccaaagacattttataagttgtgagaaatcctaattgaataccaatggatttcgttgc 10104835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 127 - 419
Target Start/End: Original strand, 10225316 - 10225612
Alignment:
Q  127 atattgaccgaaagttttctacacccaaaataatgttcacctggaataatgttctatgcatcttaaaactaat----gggaaaatgaatctcggtggaca 222  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    |||||||||||||||| ||||||    
T  10225316 atattgactgaaagttttctacacccaaaataatgttcaactggaataatgttctatgcatcttgaaactaattaatgggaaaatgaatctcgttggaca 10225415  T
Q  223 gcaaggataagaaaattgtgagtctcacaaatttgtgagattgtttgttgaatgagcattttgttcacatttttaatcaagaagtctcacaaaatccatc 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10225416 gcaaggataagaaaattgtgagtctcacaaatttgtgagattgtttgttgaatgagcattttgttcacatttttaatcaagaagtctcacaaaatccatc 10225515  T
Q  323 ccataaagaactcatcgaaatctatcaatttttgaatacccaaggacattttataagttgtgagaaatcctaattgaatatcaatggatttcgttgc 419  Q
     ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10225516 acataaagaattcatcgaaatctatcaatttttgaatacccaaggacattttataagttgtgagaaatcctaattgaataccaatggatttcgttgc 10225612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 153 - 419
Target Start/End: Original strand, 10215717 - 10215983
Alignment:
Q  153 aaaataatgttcacctggaataatgttctatgcatcttaaaactaatgggaaaatgaatctcggtggacagcaaggataagaaaattgtgagtctcacaa 252  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10215717 aaaataatgttcacctgaaataatgttctatgcatcttgaaactaatgggaaaatgaatctcggtggacagcaaggataagaaaattgtgagtctcacaa 10215816  T
Q  253 atttgtgagattgtttgttgaatgagcattttgttcacatttttaatcaagaagtctcacaaaatccatcccataaagaactcatcgaaatctatcaatt 352  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  10215817 atttgtgagattgtttgttaaatgagcattttgttcacatttttaatcaagaagtcttacaaaatccatcccataaagaattcatcgaaatctatcaatt 10215916  T
Q  353 tttgaatacccaaggacattttataagttgtgagaaatcctaattgaatatcaatggatttcgttgc 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10215917 tttgaatacccaaggacattttataagttgtgagaaatcctaattgaataccaatggatttcgttgc 10215983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 10215615 - 10215716
Alignment:
Q  10 aataatattgctctaaacgcaaaacaacccaaatttctcagtctgcctcttacaaactttccagatctgtgcgagttctcctccaaaattattttgggtg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10215615 aataatattgctctaaacgcaaaacaacccaaatttctcagtctgcctctcacaaactttccagatctgtgcgagttctcctccaaaattattttgggtg 10215714  T
Q  110 ta 111  Q
    ||    
T  10215715 ta 10215716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 267 - 418
Target Start/End: Original strand, 45926734 - 45926886
Alignment:
Q  267 ttgttgaatgagcattttgttcacatttttaatcaagaagtctcacaaaatccatcccataaa-gaactcatcgaaatctatcaatttttgaatacccaa 365  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| | |  |||||| |||  |||  ||||||||||||||||||||||| ||    
T  45926734 ttgttgaatgagcattttgttcacatttttaatcaaaaagtctcacaaaatacgttgcataaaagaatccattaaaatctatcaatttttgaataccgaa 45926833  T
Q  366 ggacattttataagttgtgagaaatcctaattgaatatcaatggatttcgttg 418  Q
     || ||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  45926834 tgagattttataagttgtgagaaatcctaattgaataccaacggatttcgttg 45926886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 10055666 - 10055754
Alignment:
Q  127 atattgaccgaaagttttctacacccaaaataatgttcacctggaataatgttctatgcatcttaaaactaatgggaaaatgaatctcg 215  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10055666 atattgactgaaagttttctacacccaaaataatgttcacctggaataatgttctatgcatcttgaaactaatgggaaaatgaatctcg 10055754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 267 - 419
Target Start/End: Complemental strand, 46749545 - 46749392
Alignment:
Q  267 ttgttgaatgagcattttgttcacatttttaatcaagaagtctcacaaaatccatcccataaagaactcatcgaaatctatcaatttttg-aatacccaa 365  Q
    ||||| |||||| | | |||| ||||||||||| || ||||||| |||||||||  ||||||| ||  |||| |||||||| |||||||  |||| | |     
T  46749545 ttgttaaatgagaagtgtgttgacatttttaattaaaaagtctctcaaaatccactccataaaaaatccatcaaaatctattaatttttttaatagcaac 46749446  T
Q  366 ggacattttataagttgtgagaaatcctaattgaatatcaatggatttcgttgc 419  Q
     ||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  46749445 agacattttataagttgtgagaaatcttaattgaatatcaacggatttcgttgc 46749392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 97 - 130
Target Start/End: Complemental strand, 10104576 - 10104543
Alignment:
Q  97 attattttgggtgtagaaaactttcggtcaatat 130  Q
    ||||||||||||||||||||||||||||||||||    
T  10104576 attattttgggtgtagaaaactttcggtcaatat 10104543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 130
Target Start/End: Complemental strand, 10055699 - 10055666
Alignment:
Q  97 attattttgggtgtagaaaactttcggtcaatat 130  Q
    ||||||||||||||||||||||||| ||||||||    
T  10055699 attattttgggtgtagaaaactttcagtcaatat 10055666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 130
Target Start/End: Complemental strand, 10225349 - 10225316
Alignment:
Q  97 attattttgggtgtagaaaactttcggtcaatat 130  Q
    ||||||||||||||||||||||||| ||||||||    
T  10225349 attattttgggtgtagaaaactttcagtcaatat 10225316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 127 - 419
Target Start/End: Original strand, 26795158 - 26795454
Alignment:
Q  127 atattgaccgaaagttttctacacccaaaataatgttcacctggaataatgttctatgcatcttaaaactaat----gggaaaatgaatctcggtggaca 222  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    |||||||||||||||| ||||||    
T  26795158 atattgactgaaagttttctacacccaaaataatgttcaactggaataatgttctatgcatcttgaaactaattaatgggaaaatgaatctcgttggaca 26795257  T
Q  223 gcaaggataagaaaattgtgagtctcacaaatttgtgagattgtttgttgaatgagcattttgttcacatttttaatcaagaagtctcacaaaatccatc 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26795258 gcaaggataagaaaattgtgagtctcacaaatttgtgagattgtttgttgaatgagcattttgttcacatttttaatcaagaagtctcacaaaatccatc 26795357  T
Q  323 ccataaagaactcatcgaaatctatcaatttttgaatacccaaggacattttataagttgtgagaaatcctaattgaatatcaatggatttcgttgc 419  Q
    |||||||||| | |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26795358 ccataaagaattaatcgaagtctatcaatttttgaatacccaaagacattttataagttgtgagaaatcctaattgaataccaatggatttcgttgc 26795454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 243 - 418
Target Start/End: Original strand, 28594208 - 28594382
Alignment:
Q  243 agtctcacaaatttgtgagattgtttgttgaatgagcattttgttcacatttttaatcaagaagtctcacaaaatccatcccataaa-gaactcatcgaa 341  Q
    |||||||||||||| || ||  | |||||||||||||||||| |||||||||||||  || ||||||||||||||||||   ||||| |||  |||  ||    
T  28594208 agtctcacaaatttttgtga--gattgttgaatgagcattttattcacatttttaactaaaaagtctcacaaaatccattatataaaagaatccattaaa 28594305  T
Q  342 atctatcaatttttgaatacccaaggacattttataagttgtgagaaatcctaattgaatatcaatggatttcgttg 418  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  28594306 atctatcaatttttgaataccgaaagacattttataagttgtgagaaatcctaattgaataccaacggatttcgttg 28594382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 267 - 402
Target Start/End: Complemental strand, 27786498 - 27786362
Alignment:
Q  267 ttgttgaatgagcattttgttcacatttttaatcaagaagtctcacaaaatccatcccataaa-gaactcatcgaaatctatcaatttttgaatacccaa 365  Q
    ||||||||||||||||||||||||||||||||  || |||||||||||||||||| ||||||| |||  |||  ||||||||||||||||||||||| ||    
T  27786498 ttgttgaatgagcattttgttcacatttttaactaaaaagtctcacaaaatccattccataaaagaatccattaaaatctatcaatttttgaataccgaa 27786399  T
Q  366 ggacattttataagttgtgagaaatcctaattgaata 402  Q
     ||||||||||||||||||||||||| ||||||||||    
T  27786398 tgacattttataagttgtgagaaatcataattgaata 27786362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 343 - 419
Target Start/End: Original strand, 26806442 - 26806518
Alignment:
Q  343 tctatcaatttttgaatacccaaggacattttataagttgtgagaaatcctaattgaatatcaatggatttcgttgc 419  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26806442 tctatcaatttttgaatacccaaagacattttataagttgtgagaaatcctaattgaataccaatggatttcgttgc 26806518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 34500846 - 34500928
Alignment:
Q  13 aatattgctctaaacgcaaaacaac--ccaaatttctcagtctgcctcttacaaactttccagatctgtgcgagttctcctcc 93  Q
    ||||||||||||||||||||| ||   |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  34500846 aatattgctctaaacgcaaaaaaaaatccaaatttctcagtctgcctctcacaaactttctagatctgtgcgagttctcctcc 34500928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 267 - 419
Target Start/End: Original strand, 9689134 - 9689287
Alignment:
Q  267 ttgttgaatgagcattttgttcacatttttaatcaagaagtctcacaaaatccatcccata-aagaactcatcgaaatctatcaatttttgaatacccaa 365  Q
    |||||||||||| |||||||| | ||||||||  || |||||||||||||| ||  ||||  || ||  |||  ||||||||  ||||||||||| | |     
T  9689134 ttgttgaatgagtattttgtttatatttttaactaaaaagtctcacaaaattcactccatccaataatccattaaaatctatgtatttttgaatatcaat 9689233  T
Q  366 ggacattttataagttgtgagaaatcctaattgaatatcaatggatttcgttgc 419  Q
    |||||||||||||||  |||||||||  ||||||||| ||| ||||||||||||    
T  9689234 ggacattttataagtaatgagaaatctcaattgaataccaacggatttcgttgc 9689287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 130
Target Start/End: Complemental strand, 26795191 - 26795158
Alignment:
Q  97 attattttgggtgtagaaaactttcggtcaatat 130  Q
    ||||||||||||||||||||||||| ||||||||    
T  26795191 attattttgggtgtagaaaactttcagtcaatat 26795158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 28594123 - 28594195
Alignment:
Q  170 gaataatgttctatgcatcttaaaactaatgggaaaatgaatctcggtggacagcaaggataagaaaattgtg 242  Q
    |||||||||||  |||||||  ||| ||||| |||||||| ||||| ||||||||| ||| ||||| ||||||    
T  28594123 gaataatgttccgtgcatctggaaattaatgagaaaatgattctcgttggacagcatggaaaagaatattgtg 28594195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 9e-68; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 203 - 419
Target Start/End: Complemental strand, 37981977 - 37981763
Alignment:
Q  203 aaaatgaatctcggtggacagcaaggataagaaaattgtgagtctcacaaatttgtgagattgtttgttgaatgagcattttgttcacatttttaatcaa 302  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||  | ||||||||||||||||||||||||||||||||| ||    
T  37981977 aaaatgaatctcgttggacagcaaggaaaagaaaattgtgagtctcacaaatttgtgtga--gattgttgaatgagcattttgttcacatttttaattaa 37981880  T
Q  303 gaagtctcacaaaatccatcccataaa-gaactcatcgaaatctatcaatttttgaatacccaaggacattttataagttgtgagaaatcctaattgaat 401  Q
     |||||||||||| || || ||||||| |||  |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  37981879 -aagtctcacaaattctattccataaaagaatccatcaaaatctatcaatttttgaatacctaaggacattttataagttgtgagaaatcctaattgaat 37981781  T
Q  402 atcaatggatttcgttgc 419  Q
    | ||| ||||||| ||||    
T  37981780 accaacggatttcattgc 37981763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 8e-65; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 203 - 419
Target Start/End: Complemental strand, 53594441 - 53594228
Alignment:
Q  203 aaaatgaatctcggtggacagcaaggataagaaaattgtgagtctcacaaatttgt--gagattgtttgttgaatgagcattttgttcacatttttaatc 300  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||  ||||||      ||||||||||||||||||||||||||||||    
T  53594441 aaaatgaatctcgttggacagcaaggaaaagaaaattgtgagtctcacaaatttgtctgagatt------tgaatgagcattttgttcacatttttaatc 53594348  T
Q  301 aagaagtctcacaaaatccatcccataaagaactc-atcgaaatctatcaatttttgaatacccaaggacattttataagttgtgagaaatcctaattga 399  Q
    || |||||||||||||||||| ||||||| || || ||| |||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||    
T  53594347 aaaaagtctcacaaaatccattccataaaaaaatccatcaaaatctatcaattttttaataccgaaagacattttataagttgtgagaaatcctaattga 53594248  T
Q  400 atatcaatggatttcgttgc 419  Q
    ||| ||| ||||||| ||||    
T  53594247 ataccaacggatttcattgc 53594228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 267 - 402
Target Start/End: Original strand, 37370676 - 37370812
Alignment:
Q  267 ttgttgaatgagcattttgttcacatttttaatcaagaagtctcacaaaatccatcccataaa-gaactcatcgaaatctatcaatttttgaatacccaa 365  Q
    |||||||||||| |||||||||||||||||||  |  |||||||||||||||||| ||||||| |||  |||  ||||||||||||||||||||||| ||    
T  37370676 ttgttgaatgagtattttgttcacatttttaactataaagtctcacaaaatccattccataaaagaatccattaaaatctatcaatttttgaataccgaa 37370775  T
Q  366 ggacattttataagttgtgagaaatcctaattgaata 402  Q
    |||||||||||||||||||||||||| ||||||||||    
T  37370776 ggacattttataagttgtgagaaatcttaattgaata 37370812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 267 - 417
Target Start/End: Original strand, 28100371 - 28100522
Alignment:
Q  267 ttgttgaatgagcattttgttcacatttttaatcaagaagtctcacaaaatccatcccataaa-gaactcatcgaaatctatcaatttttgaatacccaa 365  Q
    |||||||||||| | | |||||||||||||||  || ||||||| |||||||||| ||||||| |||  |||| |||||||| |||||||||||||  ||    
T  28100371 ttgttgaatgagtagtgtgttcacatttttaactaaaaagtctctcaaaatccattccataaaagaatccatcaaaatctattaatttttgaatactaaa 28100470  T
Q  366 ggacattttataagttgtgagaaatcctaattgaatatcaatggatttcgtt 417  Q
     ||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  28100471 agacattttataagttgtgagaaatcttaattgaatatcaacggatttcgtt 28100522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 267 - 402
Target Start/End: Complemental strand, 41762273 - 41762137
Alignment:
Q  267 ttgttgaatgagcattttgttcacatttttaatcaagaagtctcacaaaatccatcccataaa-gaactcatcgaaatctatcaatttttgaatacccaa 365  Q
    ||||||||| || ||| |||||||||||||||  || || | ||||||||||||  ||||||| ||| ||||| | ||| || || |||| |||||| ||    
T  41762273 ttgttgaataagtattgtgttcacatttttaactaaaaaatttcacaaaatccactccataaaagaattcatcaatatccataaaattttaaataccaaa 41762174  T
Q  366 ggacattttataagttgtgagaaatcctaattgaata 402  Q
     ||||||||||||||||||||||||||||||||||||    
T  41762173 agacattttataagttgtgagaaatcctaattgaata 41762137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 419
Target Start/End: Complemental strand, 38231043 - 38230914
Alignment:
Q  291 atttttaatcaagaagtctcacaaaatccatcccata-aagaactcatcgaaatctatcaatttttgaatacccaaggacattttataagttgtgagaaa 389  Q
    ||||||||  || |||||||||||||||||| ||||  |||||  |||| ||||||||  | ||||||||||| | ||||| || ||||||  |||||||    
T  38231043 atttttaactaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctatagacttttgaataccaatggacaattcataagtcatgagaaa 38230944  T
Q  390 tcctaattgaatatcaatggatttcgttgc 419  Q
    ||  ||||||||| ||| |||||| |||||    
T  38230943 tctcaattgaataccaacggattttgttgc 38230914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 267 - 397
Target Start/End: Complemental strand, 24318211 - 24318080
Alignment:
Q  267 ttgttgaatgagcattttgttcacatttttaatcaagaagtctcacaaaatccatcccataaa-gaactcatcgaaatctatcaatttttgaatacccaa 365  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| |||  |||| ||||||||||||||||||||||| ||    
T  24318211 ttgttgaatgagcattttgttcacatttttaaccaaaaagtctcacaaaatccattccataaaagaatccatcaaaatctatcaatttttgaataccgaa 24318112  T
Q  366 ggacattttataagttgtgagaaatcctaatt 397  Q
     |||||||||||||||||||||||||||||||    
T  24318111 agacattttataagttgtgagaaatcctaatt 24318080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 267 - 419
Target Start/End: Original strand, 11586 - 11739
Alignment:
Q  267 ttgttgaatgagcattttgttcacatttttaatcaagaagtctcacaaaatccatcccataaa-gaactcatcgaaatctatcaatttttgaatacccaa 365  Q
    |||||||||||| | | |||||||||||||||  || ||||||| |||||||||| ||||||| |||  |||| ||||| || |||||||||||||| ||    
T  11586 ttgttgaatgaggaatgtgttcacatttttaactaaaaagtctctcaaaatccattccataaaagaatccatcaaaatcaattaatttttgaataccaaa 11685  T
Q  366 ggacattttataagttgtgagaaatcctaattgaatatcaatggatttcgttgc 419  Q
      |||||||||||||||||||||||| |||||||||| ||| ||||| ||||||    
T  11686 atacattttataagttgtgagaaatcttaattgaataccaacggattccgttgc 11739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 267 - 419
Target Start/End: Complemental strand, 3634499 - 3634346
Alignment:
Q  267 ttgttgaatgagcattttgttcacatttttaatcaagaagtctcacaaaatccatcccataaa-gaactcatcgaaatctatcaatttttgaatacccaa 365  Q
    |||||||||||| | | |||||||||||||||  || ||||||| |||||||||| ||||||| |||  |||| ||||| || |||||||||||||| ||    
T  3634499 ttgttgaatgaggaatgtgttcacatttttaactaaaaagtctctcaaaatccattccataaaagaatccatcaaaatcaattaatttttgaataccaaa 3634400  T
Q  366 ggacattttataagttgtgagaaatcctaattgaatatcaatggatttcgttgc 419  Q
      |||||||||||||||||||||||| |||||||||| ||| ||||| ||||||    
T  3634399 atacattttataagttgtgagaaatcttaattgaataccaacggattccgttgc 3634346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 419
Target Start/End: Original strand, 9598945 - 9599007
Alignment:
Q  357 aatacccaaggacattttataagttgtgagaaatcctaattgaatatcaatggatttcgttgc 419  Q
    |||||| | ||| |||||||||||||||||||||| ||||||| ||  || ||||||||||||    
T  9598945 aataccaatggatattttataagttgtgagaaatcataattgactactaacggatttcgttgc 9599007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 9825217 - 9825271
Alignment:
Q  267 ttgttgaatgagcattttgttcacatttttaatcaagaagtctcacaaaatccat 321  Q
    ||||||||| || ||| |||||||||||||||| || |||||||| |||||||||    
T  9825217 ttgttgaataagtattatgttcacatttttaattaaaaagtctcataaaatccat 9825271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 419
Target Start/End: Original strand, 9826516 - 9826578
Alignment:
Q  357 aatacccaaggacattttataagttgtgagaaatcctaattgaatatcaatggatttcgttgc 419  Q
    |||||| | ||| |||||||||||||||||||||| ||||||| ||  || ||||||||||||    
T  9826516 aataccaatggatattttataagttgtgagaaatcataattgactactaacggatttcgttgc 9826578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 10727142 - 10727196
Alignment:
Q  267 ttgttgaatgagcattttgttcacatttttaatcaagaagtctcacaaaatccat 321  Q
    ||||||||| || ||| |||||||||||||||| || |||||||| |||||||||    
T  10727142 ttgttgaataagtattatgttcacatttttaattaaaaagtctcataaaatccat 10727196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 419
Target Start/End: Original strand, 46037163 - 46037292
Alignment:
Q  291 atttttaatcaagaagtctcacaaaatccatcccata-aagaactcatcgaaatctatcaatttttgaatacccaaggacattttataagttgtgagaaa 389  Q
    ||||||||  || |||||||||||||||||| ||||  |||||  |||| ||||||||  | ||||||||||| |  |||| || ||||||  |||||||    
T  46037163 atttttaactaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctatagacttttgaataccaatagacaattcataagtcatgagaaa 46037262  T
Q  390 tcctaattgaatatcaatggatttcgttgc 419  Q
    ||  ||||||||| ||| |||||| |||||    
T  46037263 tctcaattgaataccaacggattttgttgc 46037292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 418
Target Start/End: Complemental strand, 48999121 - 48999080
Alignment:
Q  377 aagttgtgagaaatcctaattgaatatcaatggatttcgttg 418  Q
    ||||||||||||||   |||||||||||||||||||||||||    
T  48999121 aagttgtgagaaatttcaattgaatatcaatggatttcgttg 48999080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 419
Target Start/End: Original strand, 37042413 - 37042505
Alignment:
Q  327 aaagaactcatcgaaatctatcaatttttgaatacccaaggacattttataagttgtgagaaatcctaattgaatatcaatggatttcgttgc 419  Q
    |||||| ||||  ||||||||  |||||||||||||    || | |||||||||||||||||||| ||||||||||  |  ||||||||||||    
T  37042413 aaagaattcatttaaatctatgtatttttgaataccatgagataatttataagttgtgagaaatcttaattgaatactaccggatttcgttgc 37042505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 243 - 402
Target Start/End: Complemental strand, 42658031 - 42657874
Alignment:
Q  243 agtctcacaaatttgtgagattgtttgttgaatgagcattttgttcacatttttaatcaagaagtctcacaaaatccatcccata-aagaactcatcgaa 341  Q
    |||||||||||||| || ||  | |||||||||||| ||| |||||||||||||||  || |||||||| ||||||||| ||||| |||||  |||| ||    
T  42658031 agtctcacaaatttttgtga--gattgttgaatgagtattgtgttcacatttttaactaaaaagtctcataaaatccattccatagaagaatccatcaaa 42657934  T
Q  342 atctatcaatttttgaatacccaaggacattttataagttgtgagaaatcctaattgaata 402  Q
    |||| |  ||||||||||||| | |||||||||||||||||||| ||||||||||||||||    
T  42657933 atct-tagatttttgaataccaatggacattttataagttgtgaaaaatcctaattgaata 42657874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 267 - 419
Target Start/End: Complemental strand, 27198566 - 27198413
Alignment:
Q  267 ttgttgaatgagcattttgttcacatttttaatcaagaagtctcacaaaatccatcccat-aaagaactcatcgaaatctatcaatttttgaatacccaa 365  Q
    |||||||||||| |||||||||| ||||||||  |||||||||||||||||| |  | || ||||||  |||  ||||||||  ||||||||||||| |     
T  27198566 ttgttgaatgagtattttgttcatatttttaactaagaagtctcacaaaatcaactctataaaagaatccattaaaatctatatatttttgaataccaat 27198467  T
Q  366 ggacattttataagttgtgagaaatcctaattgaatatcaatggatttcgttgc 419  Q
    |||||||||| ||||  |||||||||  |||| |||| ||| ||||||||||||    
T  27198466 ggacattttagaagtaatgagaaatctcaattcaataccaacggatttcgttgc 27198413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 419
Target Start/End: Complemental strand, 48194861 - 48194732
Alignment:
Q  291 atttttaatcaagaagtctcacaaaatccatcccata-aagaactcatcgaaatctatcaatttttgaatacccaaggacattttataagttgtgagaaa 389  Q
    ||||||||  || |||||||||||||||||| ||||  |||||  |||| ||||||||  | ||||||||||| | ||||| || ||||||  |||||||    
T  48194861 atttttaactaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctatagacttttgaataccaatggacaattcataagtcatgagaaa 48194762  T
Q  390 tcctaattgaatatcaatggatttcgttgc 419  Q
    ||  ||||||||| ||| |||||| |||||    
T  48194761 tctcaattgaataccaacggattttgttgc 48194732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 419
Target Start/End: Complemental strand, 48203619 - 48203490
Alignment:
Q  291 atttttaatcaagaagtctcacaaaatccatcccata-aagaactcatcgaaatctatcaatttttgaatacccaaggacattttataagttgtgagaaa 389  Q
    ||||||||  || |||||||||||||||||| ||||  |||||  |||| ||||||||  | ||||||||||| | ||||| || ||||||  |||||||    
T  48203619 atttttaactaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctatagacttttgaatacctatggacaattcataagtcatgagaaa 48203520  T
Q  390 tcctaattgaatatcaatggatttcgttgc 419  Q
    ||  ||||||||| ||| |||||| |||||    
T  48203519 tctcaattgaataccaacggattttgttgc 48203490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 419
Target Start/End: Complemental strand, 7100435 - 7100306
Alignment:
Q  291 atttttaatcaagaagtctcacaaaatccatcccata-aagaactcatcgaaatctatcaatttttgaatacccaaggacattttataagttgtgagaaa 389  Q
    ||||||||  || |||||||||||||||||| ||||  |||||  |||| ||||||||  | ||||||||||| | ||||| || ||||||  |||||||    
T  7100435 atttttaactaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctatagacttttgaataccaatggacaattcataagtcatgagaaa 7100336  T
Q  390 tcctaattgaatatcaatggatttcgttgc 419  Q
    ||  ||||||||| ||| |||||| |||||    
T  7100335 tctcaattgaataccaacggattttgttgc 7100306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 419
Target Start/End: Original strand, 8794195 - 8794324
Alignment:
Q  291 atttttaatcaagaagtctcacaaaatccatcccata-aagaactcatcgaaatctatcaatttttgaatacccaaggacattttataagttgtgagaaa 389  Q
    ||||||||  || |||||||||||||||||| ||||  |||||  |||| ||||||||  | ||||||||||| | ||||| || ||||||  |||||||    
T  8794195 atttttaactaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctatagacttttgaataccaatggacaattcataagtcatgagaaa 8794294  T
Q  390 tcctaattgaatatcaatggatttcgttgc 419  Q
    ||  ||||||||| ||| |||||| |||||    
T  8794295 tctcaattgaataccaacggattttgttgc 8794324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 419
Target Start/End: Original strand, 11007622 - 11007666
Alignment:
Q  375 ataagttgtgagaaatcctaattgaatatcaatggatttcgttgc 419  Q
    ||||| |||||||||||||||||||||| |||  |||||||||||    
T  11007622 ataagctgtgagaaatcctaattgaataccaacagatttcgttgc 11007666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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