View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0924_low_9 (Length: 411)
Name: NF0924_low_9
Description: NF0924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0924_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 30 - 403
Target Start/End: Complemental strand, 38187583 - 38187210
Alignment:
| Q |
30 |
ctagcaggtccttcccaagttgaattgctccataagaatttcaaggtcatgaaggagaaatcgatgtctaaatggaagaaaactatcatcgagaagtata |
129 |
Q |
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| T |
38187583 |
ctagcaggtccttcccaagttgaattgctccataagaatttcaaggtcatgaaggagaaatcgatgtctcaatggaagaaaactatcatagagaagtata |
38187484 |
T |
|
| Q |
130 |
actatgtagctctgaaggacccacttccaagagaacttctgctgggtcagagtgagaggcaaattctgtatgatcgcgctggtagaattattaagggaga |
229 |
Q |
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| T |
38187483 |
actatgtagctctgaaggacccacttccaagagaacttctgctgggtcagagtgagaggcaaattctgtatgatcgcgctggtagaattattaagggaga |
38187384 |
T |
|
| Q |
230 |
ggtaagacatgcattctatatatttattgcctcataatttgaagttgcatatcagtcttgcactaaatgccttctttgtgatatcactggttttatacat |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
38187383 |
ggtaagacatgcattctatatatttattgcctcataatttcaagttgcatatcagtcttacactaaatgccttctttgtgatatcactggttttagacat |
38187284 |
T |
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| Q |
330 |
gatctgttaatttccctagggattcattattggnnnnnnnncaactcttaagcattatgcttttagcctttgct |
403 |
Q |
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| T |
38187283 |
gatctgttaatttccctagggattcattattggtttttgttcaactcttaagcattatgcttttagcctttgct |
38187210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 38 - 288
Target Start/End: Original strand, 38923328 - 38923578
Alignment:
| Q |
38 |
tccttcccaagttgaattgctccataagaatttcaaggtcatgaaggagaaatcgatgtctaaatggaagaaaactatcatcgagaagtataactatgta |
137 |
Q |
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| T |
38923328 |
tccttcccaagctgaattgctctataaaaatttcaaggtcatgaaggagaaattgaagtctcaaacaaaggacactattattgagaagtatggcaatgca |
38923427 |
T |
|
| Q |
138 |
gctctgaaggacccacttccaagagaacttctgctgggtcagagtgagaggcaaattctgtatgatcgcgctggtagaattattaagggagaggtaagac |
237 |
Q |
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||| ||||| |||||||||||||||||| ||||||||||||||||||||| || ||||||||| |||||||||||| |||||||| |||||||| |
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| T |
38923428 |
gctgacgaggacaaacttccaagagaacttcttctgggtcagagtgagaggcaagttgagtatgatcgtgctggtagaattgttaagggacaggtaagaa |
38923527 |
T |
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| Q |
238 |
atgcattctatatatttattgcctcataatttgaagttgcatatcagtctt |
288 |
Q |
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||||||||||||| |||||| |||| ||||| || |||||||||| |||| |
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| T |
38923528 |
atgcattctatatctttattatctcacaatttcaatttgcatatcaatctt |
38923578 |
T |
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