View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_high_15 (Length: 479)
Name: NF0925_high_15
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 2244351 - 2244628
Alignment:
| Q |
1 |
cttaggttgtagattttatatgtgaagtaattgatttgtcttcttcattaagaaatgtaataatgcttacgttctactgtagccatgttgatgcaattat |
100 |
Q |
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| T |
2244351 |
cttaggttgtagattatatatgtgaagtaattgatttgtcttcttcattaagaaatgtaataatgcttacgttctactgtagccatgttgatgcaattat |
2244450 |
T |
|
| Q |
101 |
acaaaaatctttttatcttctgctctccaacaagagcgagctatcattgagtcatcatcaattcttgaatgaattaaatttaaaagaactaagaatgtct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2244451 |
acaaaaatctttttatcttctgctctccaacaagagcgagctatcattgagtcatcatcaattcttgaatgaattaaatttaaaagaactaagaatgtct |
2244550 |
T |
|
| Q |
201 |
tcagaaatcttgtccactatgtacctcttttcaccttcatcgatcttggataagtttgttagtaggtatattcagcattgat |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2244551 |
tcagaaatcttgtccactatgtacctcttttcaccttc----atcttggataagtttgttagtaggtatattcagcattgat |
2244628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 314 - 469
Target Start/End: Original strand, 2244629 - 2244776
Alignment:
| Q |
314 |
gatatattctcctctgtaaatcagattttttcatacggaaaagtcagagatcgaac--gtgtgtgaagtatttgagtcgcttaccacccgttcaaaccgc |
411 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2244629 |
gatatattctcctttgtaaatcagattttttcatacggaaaagtcagagatcgaacgtgtgtgtgaagtatttgagtcgcttaccacccgttcaaaccgc |
2244728 |
T |
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| Q |
412 |
cacccgcacaacccatgtgctcttatggacgaaattgggtggctatatatcatctgtg |
469 |
Q |
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| T |
2244729 |
cacccgcacaaccc----------atggacgaaattgggtggctatatatcatctgtg |
2244776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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