View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0925_high_23 (Length: 450)
Name: NF0925_high_23
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_high_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 12 - 353
Target Start/End: Complemental strand, 49933217 - 49932876
Alignment:
| Q |
12 |
atgaaggtgactaaggttatgatgtagaagcagagtcttttaagggagctttgatatcaacctgaaagggaaatgatgtaataaagttgaatagtatatt |
111 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
49933217 |
atgaaggtgactaaggttatgatgtacaagcagagtcttttaagggagctttgatatcaacctgaaagggaaatgatgtaataaagttgaatagcatatt |
49933118 |
T |
|
| Q |
112 |
ttgtgattttgaaagtacaggctatgaccaatctttgaaagcacctatctctctgcatagccgnnnnnnncatttctaaattctaaaatagtaactagcc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
49933117 |
ttgtgattttgaaagtacaggctatgaccaatctttgaaagcacctatctctctgcatagccgaaaaaaatatttctaaattctaaaatagtaactagcc |
49933018 |
T |
|
| Q |
212 |
aagcatcccaaacgaaataataagaccactttatcccagataagtagtgttagttagcaaacaaattatgggattctgtccaatcaatgattgttgcatg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49933017 |
aagcatcccaaacgaaataataagaccactttatcccagataagcagtgttagttagcaaacaaattatgggattctgtccaatcaatgattgttgcatg |
49932918 |
T |
|
| Q |
312 |
cataaaaatctgcaacaaaccattagtattagaattactctg |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49932917 |
cataaaaatctgcaacaaaccattagtattagaattactctg |
49932876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 116 times since January 2019
Visitors: 6701