View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_high_28 (Length: 409)
Name: NF0925_high_28
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 5e-63; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 280 - 402
Target Start/End: Original strand, 48714908 - 48715030
Alignment:
| Q |
280 |
ataattttctggtacttgcatgtattatatttataggagacaggttttgaagtttcacaacccataattgaagccttgaaaagtaaaggtatttctacta |
379 |
Q |
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| T |
48714908 |
ataattttctggtacttgcatgtattatatttataggagacaggttttgaagtttcacaacccataattgaagccttgaaaagtaaaggtatttctacta |
48715007 |
T |
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| Q |
380 |
ttggagctgctggattttgttgg |
402 |
Q |
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| T |
48715008 |
ttggagctgctggattttgttgg |
48715030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 82 - 194
Target Start/End: Original strand, 48714789 - 48714901
Alignment:
| Q |
82 |
aaataagaaaaaactgtattgaaattcagtttttgataactctgatcttaaattatgattaagatgctaaacgccttgtttaatgttattgtgccttcta |
181 |
Q |
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| T |
48714789 |
aaataagaaaaaactgtattgaaattcaatttttgataactctgatcttaaattatgattaagatgctaaacgccttgtttaatgttattgtgccttcca |
48714888 |
T |
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| Q |
182 |
catttatttataa |
194 |
Q |
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| T |
48714889 |
catttatttataa |
48714901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 302 - 402
Target Start/End: Original strand, 48702507 - 48702607
Alignment:
| Q |
302 |
tattatatttataggagacaggttttgaagtttcacaacccataattgaagccttgaaaagtaaaggtatttctactattggagctgctggattttgttg |
401 |
Q |
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| T |
48702507 |
tattacatttacaggacaaaggttttgaagcttcccaaccaataattgaagccttaaaaagtaaaggtgtttctgctattggagctgctggttattgttg |
48702606 |
T |
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| Q |
402 |
g |
402 |
Q |
| |
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| T |
48702607 |
g |
48702607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 304 - 402
Target Start/End: Original strand, 48688231 - 48688329
Alignment:
| Q |
304 |
ttatatttataggagacaggttttgaagtttcacaacccataattgaagccttgaaaagtaaaggtatttctactattggagctgctggattttgttgg |
402 |
Q |
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||||||| |||||| | ||||||||||| | || ||||||||||||||||| | |||||||||||| |||| || | || |||||||||||||||||| |
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| T |
48688231 |
ttatattaataggacaaaggttttgaagatgcaaaacccataattgaagccataaaaagtaaaggtgtttcatctgtcggggctgctggattttgttgg |
48688329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 9452967 - 9453007
Alignment:
| Q |
7 |
tatatttaatgaattcaccgcttcatcttaaaagagcaaca |
47 |
Q |
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| T |
9452967 |
tatatttaatgaatttaccgcttcatcttaaaagagcaaca |
9453007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 46424154 - 46424194
Alignment:
| Q |
7 |
tatatttaatgaattcaccgcttcatcttaaaagagcaaca |
47 |
Q |
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| T |
46424154 |
tatatttaatgaattcatcgcttcatcttaaaagagcaaca |
46424194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 340 - 383
Target Start/End: Complemental strand, 32150450 - 32150407
Alignment:
| Q |
340 |
cccataattgaagccttgaaaagtaaaggtatttctactattgg |
383 |
Q |
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| T |
32150450 |
cccataattgaagccttaaaaagtaaaggtgtttctgctattgg |
32150407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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