View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0925_high_3 (Length: 655)
Name: NF0925_high_3
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 43 - 645
Target Start/End: Original strand, 5105280 - 5105883
Alignment:
| Q |
43 |
caattgtactatcaactttggtacattttacttcaatagaaaacacaataaagtaagtacatacattacattaatagacacaaaaattattttagctgaa |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5105280 |
caattgtactatcaactttggtacattttacttcaatagaaaacacaataaagtaagtacatacattacattaatagaca--aaaattattttagctgaa |
5105377 |
T |
|
| Q |
143 |
gctgaatgaatccatgatctcatctagaccttctgatatcagtttccaaagaaccagaattacgtccaccattcaaattccaatcattggtagaaccaaa |
242 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5105378 |
gttgaatgaatccatgatctcatctagaccttctgatatcagtttccaatgaaccagaattacgtccaccattcaaattccaatcattggtagaaccaaa |
5105477 |
T |
|
| Q |
243 |
agccttcccaagcaacccttgcaacctttgaggactaggataaactttcctttgcaaaaatcctgaataagactctaaaaactcagcataaactggcaca |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5105478 |
agccttcccaagcaacccttgcaacctttgaggactaggataaactttcctttgcaaaaatcctgaataagactctaaaaactcagcataaactggcaca |
5105577 |
T |
|
| Q |
343 |
acaagtttcactgttgaatccctcatttgttccctcaaatcaacatcaggtatactataaaaactcctatgcctgtcacaaatctcactcaaacacttaa |
442 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5105578 |
agaagtttcactgttgaatccctcatttgttccctcaaatcaacatcaggtatactataaaaactcctatgcctgtcacaaatctcactcaaacacttga |
5105677 |
T |
|
| Q |
443 |
aaaatgtctcaatcttttcattcaccaaccttccaatgcttttttccttgccttgtttttgttcctttat---atcatcatcttgatctaaaatcttcac |
539 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
5105678 |
aaaatgtctcaatcttttcattcaccaaccttccaatgcttttttccttgccttgtttttgttcttttatatcatcatcatcttgatctaaaatcttcac |
5105777 |
T |
|
| Q |
540 |
caaaaccaaccaagcttgcttctgatacaagtaagctgattcttctgccactgctttgtaactttctttaatgtatttctcacccaacaaatcaccaagt |
639 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5105778 |
caaaaccaaccaagcttgcttctgatacaagtaagctgattcttctgccactgctttgtaactttctttaatgtatttctcacccaacaaatcaccaagt |
5105877 |
T |
|
| Q |
640 |
tctgtg |
645 |
Q |
| |
|
|||||| |
|
|
| T |
5105878 |
tctgtg |
5105883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 193; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 30 - 246
Target Start/End: Complemental strand, 41417455 - 41417239
Alignment:
| Q |
30 |
catttaacattagcaattgtactatcaactttggtacattttacttcaatagaaaacacaataaagtaagtacatacattacattaatagacacaaaaat |
129 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
41417455 |
catttaacattaacaattgtactatcaactttggtacattttacttcaatagaaaacacaataaattaagtacatacattacattaatggacacaaaaat |
41417356 |
T |
|
| Q |
130 |
tattttagctgaagctgaatgaatccatgatctcatctagaccttctgatatcagtttccaaagaaccagaattacgtccaccattcaaattccaatcat |
229 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41417355 |
tattttagcggaagctgaatgaattcatgatctcatctagaccttctgatatcagtttccaaagaaccagaattacgtccaccatttaaattccaatcat |
41417256 |
T |
|
| Q |
230 |
tggtagaaccaaaagcc |
246 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
41417255 |
tggtagaaccaaaagcc |
41417239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 828 times since January 2019
Visitors: 6696