View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0925_high_46 (Length: 331)

Name: NF0925_high_46
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0925_high_46
NF0925_high_46
[»] chr6 (18 HSPs)
chr6 (81-278)||(27822124-27822325)
chr6 (46-163)||(3536034-3536152)
chr6 (90-263)||(11658836-11659005)
chr6 (85-222)||(12882065-12882202)
chr6 (83-200)||(33615512-33615629)
chr6 (81-163)||(3542245-3542328)
chr6 (81-163)||(29340812-29340895)
chr6 (85-156)||(18727115-18727186)
chr6 (81-159)||(30049920-30049999)
chr6 (102-159)||(30052207-30052264)
chr6 (88-263)||(32361273-32361443)
chr6 (46-189)||(8048936-8049080)
chr6 (95-189)||(1127228-1127323)
chr6 (46-156)||(18718171-18718279)
chr6 (91-195)||(22873781-22873887)
chr6 (81-126)||(29342061-29342107)
chr6 (93-173)||(14238426-14238507)
chr6 (231-279)||(8050021-8050069)
[»] chr2 (26 HSPs)
chr2 (46-279)||(33051507-33051736)
chr2 (46-278)||(36647180-36647410)
chr2 (77-180)||(15129373-15129476)
chr2 (85-220)||(12966421-12966555)
chr2 (94-263)||(32161988-32162154)
chr2 (81-272)||(1518086-1518275)
chr2 (83-220)||(4184873-4185010)
chr2 (46-163)||(27956125-27956243)
chr2 (87-278)||(23457534-23457723)
chr2 (46-160)||(2155970-2156085)
chr2 (81-163)||(27952324-27952407)
chr2 (46-160)||(31634107-31634222)
chr2 (81-163)||(22011436-22011519)
chr2 (81-163)||(33655628-33655710)
chr2 (86-189)||(5171596-5171700)
chr2 (81-163)||(31636337-31636420)
chr2 (85-220)||(8294525-8294657)
chr2 (91-220)||(28737782-28737910)
chr2 (86-210)||(21772329-21772452)
chr2 (87-271)||(32163783-32163963)
chr2 (52-158)||(28737911-28738016)
chr2 (146-269)||(25458138-25458257)
chr2 (89-220)||(36615153-36615285)
chr2 (129-220)||(36648910-36649001)
chr2 (128-190)||(12123950-12124012)
chr2 (101-158)||(2165899-2165956)
[»] chr7 (27 HSPs)
chr7 (83-278)||(4888694-4888892)
chr7 (87-278)||(30217696-30217890)
chr7 (46-220)||(1365616-1365788)
chr7 (85-271)||(1369702-1369884)
chr7 (46-160)||(13886130-13886245)
chr7 (85-271)||(11000836-11001018)
chr7 (106-271)||(24840040-24840201)
chr7 (87-189)||(5934578-5934681)
chr7 (85-274)||(6451760-6451945)
chr7 (81-163)||(13882692-13882775)
chr7 (86-278)||(3778720-3778915)
chr7 (83-163)||(859164-859245)
chr7 (83-163)||(1217168-1217249)
chr7 (81-220)||(2767875-2768009)
chr7 (46-163)||(1220410-1220529)
chr7 (85-271)||(1786580-1786763)
chr7 (99-271)||(11228878-11229046)
chr7 (85-189)||(27142640-27142745)
chr7 (46-215)||(1874490-1874656)
chr7 (62-200)||(1883457-1883591)
chr7 (46-258)||(8916349-8916556)
chr7 (98-163)||(27309638-27309704)
chr7 (81-174)||(7803037-7803131)
chr7 (85-189)||(4133284-4133389)
chr7 (83-140)||(29175780-29175838)
chr7 (119-185)||(45366015-45366081)
chr7 (87-175)||(13466719-13466808)
[»] chr1 (22 HSPs)
chr1 (77-273)||(31915444-31915636)
chr1 (85-220)||(50713658-50713792)
chr1 (55-220)||(28660727-28660891)
chr1 (88-189)||(12944090-12944192)
chr1 (94-271)||(10927091-10927262)
chr1 (86-189)||(10928263-10928367)
chr1 (81-163)||(50857450-50857533)
chr1 (85-189)||(8221462-8221567)
chr1 (85-271)||(10925637-10925816)
chr1 (85-221)||(23987516-23987655)
chr1 (81-163)||(8931220-8931303)
chr1 (46-160)||(13443959-13444074)
chr1 (82-215)||(40058109-40058243)
chr1 (87-181)||(31913359-31913453)
chr1 (91-220)||(43681404-43681535)
chr1 (126-271)||(33152771-33152914)
chr1 (85-271)||(9030914-9031096)
chr1 (85-189)||(21903726-21903830)
chr1 (85-174)||(28661078-28661168)
chr1 (85-173)||(239677-239766)
chr1 (87-189)||(8967815-8967919)
chr1 (81-141)||(13441612-13441673)
[»] chr8 (27 HSPs)
chr8 (46-220)||(2189693-2189865)
chr8 (50-189)||(26374874-26375013)
chr8 (46-163)||(22512017-22512135)
chr8 (46-163)||(22519317-22519435)
chr8 (46-163)||(22926619-22926737)
chr8 (50-163)||(42891639-42891753)
chr8 (46-161)||(42890394-42890508)
chr8 (85-271)||(14130062-14130244)
chr8 (81-189)||(24731201-24731310)
chr8 (46-189)||(2687716-2687859)
chr8 (98-186)||(18468626-18468714)
chr8 (81-278)||(24730920-24731115)
chr8 (81-163)||(22921856-22921939)
chr8 (46-163)||(37189866-37189984)
chr8 (83-163)||(23570584-23570665)
chr8 (81-163)||(6845336-6845419)
chr8 (77-134)||(26378030-26378087)
chr8 (86-189)||(20693773-20693877)
chr8 (102-271)||(24578804-24578969)
chr8 (46-113)||(18180684-18180751)
chr8 (48-220)||(16598193-16598365)
chr8 (86-163)||(22520810-22520888)
chr8 (127-259)||(24577581-24577708)
chr8 (89-220)||(2188355-2188487)
chr8 (106-163)||(23573583-23573640)
chr8 (114-189)||(2689121-2689196)
chr8 (126-184)||(2609547-2609605)
[»] chr3 (13 HSPs)
chr3 (81-278)||(2472695-2472896)
chr3 (46-163)||(43306643-43306761)
chr3 (81-163)||(43303966-43304049)
chr3 (83-278)||(365601-365791)
chr3 (81-163)||(5128909-5128992)
chr3 (46-163)||(3068846-3068964)
chr3 (80-271)||(8536374-8536565)
chr3 (81-163)||(3063743-3063826)
chr3 (98-215)||(45168343-45168463)
chr3 (85-163)||(52708844-52708923)
chr3 (136-220)||(41152494-41152577)
chr3 (85-163)||(33175835-33175914)
chr3 (85-161)||(35908496-35908572)
[»] chr5 (8 HSPs)
chr5 (85-210)||(22440812-22440936)
chr5 (47-163)||(21848937-21849054)
chr5 (93-195)||(492535-492638)
chr5 (85-189)||(18252390-18252495)
chr5 (46-210)||(19497275-19497439)
chr5 (81-163)||(40778792-40778875)
chr5 (85-174)||(8456389-8456479)
chr5 (85-212)||(26140296-26140422)
[»] chr4 (22 HSPs)
chr4 (83-220)||(40206093-40206229)
chr4 (85-271)||(13991389-13991571)
chr4 (81-180)||(24667640-24667739)
chr4 (81-163)||(6659337-6659419)
chr4 (72-263)||(19935384-19935578)
chr4 (91-189)||(22486792-22486889)
chr4 (81-163)||(7723670-7723751)
chr4 (46-258)||(7633990-7634197)
chr4 (126-189)||(38888042-38888105)
chr4 (85-189)||(17254893-17254998)
chr4 (81-189)||(21433569-21433678)
chr4 (81-189)||(7724083-7724189)
chr4 (126-189)||(9260547-9260610)
chr4 (103-189)||(18689549-18689636)
chr4 (109-220)||(10494848-10494958)
chr4 (87-189)||(18657054-18657157)
chr4 (98-204)||(53477235-53477343)
chr4 (49-163)||(54700572-54700686)
chr4 (126-220)||(13990729-13990821)
chr4 (137-279)||(3765270-3765408)
chr4 (85-157)||(50515905-50515978)
chr4 (153-189)||(50519224-50519260)
[»] scaffold0251 (1 HSPs)
scaffold0251 (87-189)||(9676-9780)
[»] scaffold0240 (3 HSPs)
scaffold0240 (96-271)||(1554-1725)
scaffold0240 (87-190)||(14820-14923)
scaffold0240 (46-189)||(16021-16162)
[»] scaffold0330 (1 HSPs)
scaffold0330 (96-271)||(17536-17707)
[»] scaffold0110 (2 HSPs)
scaffold0110 (81-195)||(46739-46855)
scaffold0110 (81-163)||(45268-45351)
[»] scaffold0054 (2 HSPs)
scaffold0054 (88-160)||(37714-37786)
scaffold0054 (87-163)||(49322-49398)
[»] scaffold0024 (1 HSPs)
scaffold0024 (85-220)||(145678-145813)
[»] scaffold0531 (1 HSPs)
scaffold0531 (46-158)||(11559-11672)


Alignment Details
Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 81 - 278
Target Start/End: Original strand, 27822124 - 27822325
Alignment:
Q  81 agtacggaagcgtaggctagcaagcgctaaaccaagatagaaaag-aacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaa 179  Q
    ||||||||||||||||||||||| ||||||||| | ||||||||| ||||||||  ||||||||| ||||||||||| |||||| || ||||||| ||||    
T  27822124 agtacggaagcgtaggctagcaaacgctaaacctaaatagaaaaggaacaagttttcaagcgacaaacttgtgaaaacagggttccgaaatccaccagaa 27822223  T
Q  180 attgagaaaaactctccaaaaatattattgattaaataaa----ataagttgcctcttaggttacaacaattaagtttaaatagggaagtaacaaaccct 275  Q
    ||||||||||||||| | ||||||||||||||| ||||||    ||||||||||| ||||||||||||  ||||| |||||||||||| |||||||| ||    
T  27822224 attgagaaaaactct-ctaaaatattattgattgaataaaagatataagttgcctattaggttacaactgttaagcttaaatagggaaataacaaactct 27822322  T
Q  276 aat 278  Q
    |||    
T  27822323 aat 27822325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 46 - 163
Target Start/End: Complemental strand, 3536152 - 3536034
Alignment:
Q  46 gaacaggagaaaccttctctgatatcaattaacgtagtacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgaca 144  Q
    ||||||| ||||||| ||||||| |||| | ||| |||||||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||    
T  3536152 gaacaggggaaacctgctctgatgtcaactgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgaca 3536053  T
Q  145 cacttgtgaaaatagggtt 163  Q
     ||||||||||||||||||    
T  3536052 aacttgtgaaaatagggtt 3536034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 90 - 263
Target Start/End: Complemental strand, 11659005 - 11658836
Alignment:
Q  90 gcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgagaaaa 189  Q
    ||||||| |||||||| ||||||| |||| ||||||||||| || |||||||| | |||||||||||||| |||| ||||||||| | ||||||||||||    
T  11659005 gcgtaggttagcaagcactaaacctagattgaaaagaacaaatttgcaagcgataaacttgtgaaaatagagttttggaatccaccaaaaattgagaaaa 11658906  T
Q  190 actctccaaaaatattattgattaaataaaataagttgcctcttaggttacaacaattaagtttaaatagggaa 263  Q
    ||||| | ||||||||||||||| |||||   |||||  ||||||||||| |||  ||||  ||||||||||||    
T  11658905 actct-ctaaaatattattgattgaataa---aagttttctcttaggttataactgttaaacttaaatagggaa 11658836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 222
Target Start/End: Complemental strand, 12882202 - 12882065
Alignment:
Q  85 cggaagcgtaggctagcaagcgctaaaccaagatagaaaaga-acaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattg 183  Q
    ||||||||||| ||||||| | || |||| |||| || |||| |||||||   |||||||| ||||||||||||||||||||||||||||| ||||||||    
T  12882202 cggaagcgtagactagcaaacactgaacctagattgagaagagacaagttttaaagcgacaaacttgtgaaaatagggtttcggaatccaccagaaattg 12882103  T
Q  184 agaaaaactctccaaaaatattattgattaaataaaata 222  Q
    ||||||||||| | ||||||||||||| | |||||||||    
T  12882102 agaaaaactct-ctaaaatattattgaatgaataaaata 12882065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 33615512 - 33615629
Alignment:
Q  83 tacggaagcgtaggctagcaagcgctaaaccaagatagaaaa-gaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaat 181  Q
    ||||||| ||||||||| ||||||| ||||| |||||||||| ||||||||| |||||||||| |||||||||||||||||||| |||| ||| | ||||    
T  33615512 tacggaaacgtaggctaacaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaat 33615611  T
Q  182 tgagaaaaactctccaaaa 200  Q
    ||| |||||||||| ||||    
T  33615612 tga-aaaaactctctaaaa 33615629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 81 - 163
Target Start/End: Complemental strand, 3542328 - 3542245
Alignment:
Q  81 agtacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtt 163  Q
    |||||||||||||||| | ||||||||||||||| ||||||||||||||||||| | |||||||| ||||||||||||||||||    
T  3542328 agtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgtaagcgacaaacttgtgaaaatagggtt 3542245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 81 - 163
Target Start/End: Original strand, 29340812 - 29340895
Alignment:
Q  81 agtacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtt 163  Q
    |||||||||||||||| | |||| |||||||||| |||||||||| |||||||| |||||||||| ||||||||||||||||||    
T  29340812 agtacggaagcgtagggttagcaggcgctaaacctagatagaaaaaaacaagtttgcaagcgacaaacttgtgaaaatagggtt 29340895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 18727186 - 18727115
Alignment:
Q  85 cggaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaa 156  Q
    ||||||||||||||||||| ||||||||| |||| |||||  |||||||||||||||||| |||||||||||    
T  18727186 cggaagcgtaggctagcaaacgctaaacctagattgaaaaacacaagttcgcaagcgacaaacttgtgaaaa 18727115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 159
Target Start/End: Complemental strand, 30049999 - 30049920
Alignment:
Q  81 agtacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatag 159  Q
    |||||||||||| ||| | ||||||||||||||| | ||||||||||||||||| |||||||||| ||||||||||||||    
T  30049999 agtacggaagcgaagggttagcaagcgctaaacctatatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatag 30049920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 30052264 - 30052207
Alignment:
Q  102 aagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatag 159  Q
    |||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||    
T  30052264 aagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatag 30052207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 263
Target Start/End: Complemental strand, 32361443 - 32361273
Alignment:
Q  88 aagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgagaa 187  Q
    ||||||||  ||||||||| |||| | |||| |||||||| | ||| |||||||| | | |||| |||||| |||| ||||||| || ||||||||||||    
T  32361443 aagcgtagattagcaagcgttaaatctagattgaaaagaa-atgtttgcaagcgataaaattgtaaaaataaggttccggaatctacgagaaattgagaa 32361345  T
Q  188 aaactctccaaaaatattattgattaaataaaataagttgcctcttaggttacaacaattaagtttaaatagggaa 263  Q
    ||||||| | ||||||||||||| | |||||   |||||| |||||| | ||||||  ||||| ||||||||||||    
T  32361344 aaactct-ctaaaatattattgaatgaataa---aagttgtctcttaagctacaacttttaagcttaaatagggaa 32361273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 189
Target Start/End: Original strand, 8048936 - 8049080
Alignment:
Q  46 gaacaggagaaacctt-ctctgatatcaattaacgtagtacggaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgaca 144  Q
    |||||||||||||| | |||||||| ||| | ||  | ||| |||||||||||||||||||  ||| || ||||  ||||||| ||||| ||||| ||||    
T  8048936 gaacaggagaaaccatgctctgataccaactgacccaatacagaagcgtaggctagcaagcattaatcctagattaaaaagaaaaagtttgcaagtgaca 8049035  T
Q  145 cacttgtgaaaatagggtttcggaatccactagaaattgagaaaa 189  Q
     ||||||||||||| || | ||| |||||| ||||||||||||||    
T  8049036 aacttgtgaaaataaggctccgggatccaccagaaattgagaaaa 8049080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 95 - 189
Target Start/End: Complemental strand, 1127323 - 1127228
Alignment:
Q  95 ggctagcaagcgctaaaccaagatagaaaagaa-caagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgagaaaa 189  Q
    ||||||| ||||||||||| ||||  ||||||| |||||| |||||||||| | |||||||||||| |||||||||| ||| | ||||||||||||    
T  1127323 ggctagcgagcgctaaacctagattaaaaagaaacaagtttgcaagcgacaaatttgtgaaaatagtgtttcggaatacaccaaaaattgagaaaa 1127228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 46 - 156
Target Start/End: Original strand, 18718171 - 18718279
Alignment:
Q  46 gaacaggagaaaccttctctgatatcaattaacgtagtacggaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacac 145  Q
    ||||||||||||||| |||||||| |||   ||| ||||| |||| |||||||||||||||||||||| |||| |||||  |||| |||||||  ||||     
T  18718171 gaacaggagaaacctgctctgataccaacggacgcagtacagaagtgtaggctagcaagcgctaaacctagattgaaaaagacaaattcgcaa--gacaa 18718268  T
Q  146 acttgtgaaaa 156  Q
    |||||||||||    
T  18718269 acttgtgaaaa 18718279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 195
Target Start/End: Complemental strand, 22873887 - 22873781
Alignment:
Q  91 cgtaggctagcaagcgctaaaccaagatagaaaaga-acaagttcgcaagcgacacacttgtgaaaatagggtttcggaatcca-ctagaaattgagaaa 188  Q
    |||||||||||||| | |||||| | || ||||||| ||||||| ||| |||||| ||||||||||  | |||| ||||||||| | | |||||||||||    
T  22873887 cgtaggctagcaagtgttaaacctaaattgaaaagagacaagtttgcatgcgacaaacttgtgaaataaaggttccggaatccaccaaaaaattgagaaa 22873788  T
Q  189 aactctc 195  Q
    | |||||    
T  22873787 agctctc 22873781  T

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Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 29342107 - 29342061
Alignment:
Q  81 agtacggaagcgtaggct-agcaagcgctaaaccaagatagaaaaga 126  Q
    |||||||||||||||| | ||||||||||||||| ||||||||||||    
T  29342107 agtacggaagcgtagggttagcaagcgctaaacctagatagaaaaga 29342061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 14238507 - 14238426
Alignment:
Q  93 taggctagcaagcgctaaaccaagatagaaaagaa-caagttcgcaagcgacacacttgtgaaaatagggtttcggaatcca 173  Q
    ||||||||||| | ||||||  | || |||||||| |||||| |||||||||| ||||||||||||| |||| |||| ||||    
T  14238507 taggctagcaaacactaaacataaattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaataaggttccggagtcca 14238426  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 8050021 - 8050069
Alignment:
Q  231 cttaggttacaacaattaagtttaaatagggaagtaacaaaccctaata 279  Q
    |||||| ||||||  ||||| |||||||||||| |||||||||||||||    
T  8050021 cttaggctacaactgttaagcttaaatagggaaataacaaaccctaata 8050069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 46 - 279
Target Start/End: Complemental strand, 33051736 - 33051507
Alignment:
Q  46 gaacaggagaaaccttctctgatatcaattaacgtagtacggaagcgtaggctagcaagcgctaaaccaagatagaaaa-gaacaagttcgcaagcgaca 144  Q
    ||||||||||||||| |||||||| ||| | ||||||||||||||| ||||||||||||||||||||| | || ||||| ||||||||| ||||||||||    
T  33051736 gaacaggagaaacctgctctgataccaactgacgtagtacggaagcttaggctagcaagcgctaaacctaaattgaaaaagaacaagtttgcaagcgaca 33051637  T
Q  145 cacttgtgaaaatagggtttcggaatccactagaaattgagaaaaactctccaaaaatattattgattaaataaaataagttgcctcttaggttacaaca 244  Q
     |||| |||||||||||||  |||||||||||||||||||| |||||||| | ||||||||||||| | |||   |||||||| |||||||  |||||      
T  33051636 aacttttgaaaatagggttctggaatccactagaaattgag-aaaactct-ctaaaatattattgaatgaat---ataagttgtctcttagactacaatt 33051542  T
Q  245 attaagtttaaatagggaagtaacaaaccctaata 279  Q
     ||||| ||||||||| || |||||| ||||||||    
T  33051541 gttaagcttaaataggaaaataacaacccctaata 33051507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 46 - 278
Target Start/End: Complemental strand, 36647410 - 36647180
Alignment:
Q  46 gaacaggagaaaccttctctgatatcaattaacgtagtacggaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacac 145  Q
    ||||| ||||||| | |||||||| ||| | ||| |||||||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||||     
T  36647410 gaacatgagaaacatgctctgataccaactgacgcagtacggaagcgtaggctagcaagcgctaaacctcgattgaaaagaacaagtttgcaagcgacaa 36647311  T
Q  146 acttgtgaaaatagggtttcggaatccactagaaattgag--aaaaactctccaaaaatattattgattaaataaaa-taagttgcctcttaggttacaa 242  Q
    ||||||||||||||||||| ||||||||| | ||| ||||  |||||||||   ||| ||||||||||| ||||||| | |  ||||||||||||||||     
T  36647310 acttgtgaaaatagggttttggaatccaccaaaaaatgaggaaaaaactct---aaagtattattgattgaataaaagtta--tgcctcttaggttacat 36647216  T
Q  243 caattaagtttaaatagggaagtaacaaaccctaat 278  Q
    |  ||||| ||||||||| || ||||||||||||||    
T  36647215 ctgttaagcttaaataggaaaataacaaaccctaat 36647180  T

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Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 77 - 180
Target Start/End: Complemental strand, 15129476 - 15129373
Alignment:
Q  77 acgtagtacggaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccacta 176  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| | ||||| || |    
T  15129476 acgtagtacggaagcgtaggctagcaagcgctaaacctagatagaaaagaacaagttcgcaagcgacaaacttgtgaaaatagggttccagaatcaacca 15129377  T
Q  177 gaaa 180  Q
    ||||    
T  15129376 gaaa 15129373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 85 - 220
Target Start/End: Complemental strand, 12966555 - 12966421
Alignment:
Q  85 cggaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattga 184  Q
    ||||||| ||||||||||| || |||| | |||| ||||||||||||||||||||||||  |||||||||||||||||| || ||||||| | |||||||    
T  12966555 cggaagcataggctagcaaacgttaaatctagattgaaaagaacaagttcgcaagcgacgaacttgtgaaaatagggttccgaaatccaccaaaaattga 12966456  T
Q  185 gaaaaactctccaaaaatattattgattaaataaaa 220  Q
    |||||||||| | ||||||||||||||| |||||||    
T  12966455 gaaaaactct-ctaaaatattattgattgaataaaa 12966421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 94 - 263
Target Start/End: Original strand, 32161988 - 32162154
Alignment:
Q  94 aggctagcaagcgctaaaccaagatagaaaagaa-caagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgagaaaaact 192  Q
    |||| |||||||| |||||| |||| |||||||| |||||| ||||| |||| ||||||||||||||||||  ||||||||| ||||| ||||||||  |    
T  32161988 aggcaagcaagcgttaaacctagatcgaaaagaaacaagtttgcaagtgacaaacttgtgaaaatagggttcaggaatccaccagaaactgagaaaactt 32162087  T
Q  193 ctccaaaaatattattgattaaataaaataagttgcctcttaggttacaacaattaagtttaaatagggaa 263  Q
    || | ||||||||||||| |||||||   ||| ||||||||| |||||||| |||||||||||||||||||    
T  32162088 ct-ctaaaatattattgaataaataa---aagctgcctcttacgttacaactattaagtttaaatagggaa 32162154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 81 - 272
Target Start/End: Complemental strand, 1518275 - 1518086
Alignment:
Q  81 agtacggaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaa 180  Q
    ||||||||||||||  |||||||||||| |||| |||| |||| | |||||||||||||||||  |||| ||||||||||||| || |||||||||||||    
T  1518275 agtacggaagcgtatcctagcaagcgcttaacctagattgaaagggacaagttcgcaagcgacgaacttatgaaaatagggttccgaaatccactagaaa 1518176  T
Q  181 ttgagaaaaactctc-caaaaatattattgattaaataaaataagttgcctcttaggttacaacaattaagtttaaatagggaagtaacaaac 272  Q
    ||||||||||  ||  | ||||||||||| ||| ||||   ||||||  |||||||||||||||  ||||| ||||||| | || ||||||||    
T  1518175 ttgagaaaaaaactttctaaaatattatttattgaata---taagttatctcttaggttacaactgttaagcttaaataagaaaataacaaac 1518086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 83 - 220
Target Start/End: Complemental strand, 4185010 - 4184873
Alignment:
Q  83 tacggaagcgtaggctagcaagcgctaaaccaagatagaaaagaac-aagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaat 181  Q
    ||||||||||||||||| ||||  |||||   ||||  |||||||  |||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  4185010 tacggaagcgtaggctaacaagtactaaatatagattcaaaagaaataagttcgcaagcgacaaacttgtgaaaatagggtttcggaatccacgagaaat 4184911  T
Q  182 tgagaaaaactctccaaaaatattattgattaaataaaa 220  Q
    ||||||||||||| | ||||||||||||| | |||||||    
T  4184910 tgagaaaaactct-ctaaaatattattgaatgaataaaa 4184873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 46 - 163
Target Start/End: Original strand, 27956125 - 27956243
Alignment:
Q  46 gaacaggagaaaccttctctgatatcaattaacgtagtacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgaca 144  Q
    ||||||||||||||| |||||||| ||| | ||| |||||||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||    
T  27956125 gaacaggagaaacctgctctgataccaactgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgaca 27956224  T
Q  145 cacttgtgaaaatagggtt 163  Q
     || | |||||||||||||    
T  27956225 aacctatgaaaatagggtt 27956243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 87 - 278
Target Start/End: Complemental strand, 23457723 - 23457534
Alignment:
Q  87 gaagcgtaggctagcaagcgctaaaccaagatagaaaagaa-caagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgag 185  Q
    |||| |||||||||||||||||||||| |||| ||||| || |||||| |||||||||| |||||||||||||||||| |||||||||| | ||||||||    
T  23457723 gaagtgtaggctagcaagcgctaaacctagattgaaaataaacaagtttgcaagcgacaaacttgtgaaaatagggttccggaatccaccaaaaattgag 23457624  T
Q  186 aaaaactctccaaaaatattattgattaaataaaa--taagttgcctcttaggttacaacaattaagtttaaatagggaagtaacaaaccctaat 278  Q
     |||||||| | ||||||||||||| | |||||||  |||||   |||||||| |||||   ||||  ||||||||| || ||||||||||||||    
T  23457623 -aaaactct-ctaaaatattattgaatgaataaaagttaagt---ctcttaggctacaattgttaaacttaaataggaaaataacaaaccctaat 23457534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 160
Target Start/End: Complemental strand, 2156085 - 2155970
Alignment:
Q  46 gaacaggagaaaccttctctgatatcaattaacgtagtacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgaca 144  Q
    ||||||| ||||||| |||||||  ||| | ||| |||||||||||||||| | ||||||||||||||| ||||||||||||||||||| || |||||||    
T  2156085 gaacaggggaaacctgctctgatgccaactgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcgagcgaca 2155986  T
Q  145 cacttgtgaaaatagg 160  Q
     |||||||||||||||    
T  2155985 aacttgtgaaaatagg 2155970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 163
Target Start/End: Original strand, 27952324 - 27952407
Alignment:
Q  81 agtacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtt 163  Q
    |||||||||||||||| | ||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  27952324 agtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 27952407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 160
Target Start/End: Complemental strand, 31634222 - 31634107
Alignment:
Q  46 gaacaggagaaaccttctctgatatcaattaacgtagtacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgaca 144  Q
    ||||||||||||||| || ||||| ||| | ||| |||||||||||||||| | ||||| ||||||||| ||||||||||||||||||| || |||||||    
T  31634222 gaacaggagaaacctgctatgataccaactgacgcagtacggaagcgtagggttagcaaacgctaaacctagatagaaaagaacaagtttgctagcgaca 31634123  T
Q  145 cacttgtgaaaatagg 160  Q
     |||||||||||||||    
T  31634122 aacttgtgaaaatagg 31634107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 81 - 163
Target Start/End: Complemental strand, 22011519 - 22011436
Alignment:
Q  81 agtacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtt 163  Q
    |||||||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||| |||| ||||||||||||||||||    
T  22011519 agtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagtgacaaacttgtgaaaatagggtt 22011436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 163
Target Start/End: Complemental strand, 33655710 - 33655628
Alignment:
Q  81 agtacggaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtt 163  Q
    |||||||||| ||||| |||||||||||||||| ||||||||||  ||||||| |||||||||| ||||||||||||||||||    
T  33655710 agtacggaagtgtaggttagcaagcgctaaacctagatagaaaaatacaagtttgcaagcgacaaacttgtgaaaatagggtt 33655628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 189
Target Start/End: Original strand, 5171596 - 5171700
Alignment:
Q  86 ggaagcgtaggctagcaagcgctaaaccaagatagaaaaga-acaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattga 184  Q
    ||||||||||| || ||||||||||| | |||| ||||||| ||||||| |||||||||| |||||| |||||||||||   ||||||||||||||||||    
T  5171596 ggaagcgtaggttaacaagcgctaaatctagattgaaaagagacaagtttgcaagcgacaaacttgtaaaaatagggttcaagaatccactagaaattga 5171695  T
Q  185 gaaaa 189  Q
    |||||    
T  5171696 gaaaa 5171700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 81 - 163
Target Start/End: Complemental strand, 31636420 - 31636337
Alignment:
Q  81 agtacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtt 163  Q
    |||||||||||||||| | ||||||||||||||| |||||||||||||| |||| |||||||||| ||||||||||||| ||||    
T  31636420 agtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaactagtttgcaagcgacaaacttgtgaaaatatggtt 31636337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 220
Target Start/End: Complemental strand, 8294657 - 8294525
Alignment:
Q  85 cggaagcgtaggctagcaagcgctaaaccaagatagaa-aagaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattg 183  Q
    ||||||| |||||||||||| |||||||  |||||||| ||||||| ||| |||||||||| |||||| ||||||| |||||  ||||||| ||||||||    
T  8294657 cggaagcataggctagcaagtgctaaacttagatagaagaagaacacgtttgcaagcgacaaacttgtaaaaatagtgtttcataatccaccagaaattg 8294558  T
Q  184 agaaaaactctccaaaaatattattgattaaataaaa 220  Q
    | |||||||||   ||||||||||| ||| |||||||    
T  8294557 a-aaaaactct---aaaatattattcattgaataaaa 8294525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 91 - 220
Target Start/End: Complemental strand, 28737910 - 28737782
Alignment:
Q  91 cgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacaca-cttgtgaaaatagggtttcggaatccactagaaattgagaaaa 189  Q
    ||||||||||||||||||||||| | || |||||||  ||||| ||||| |||| | ||||||||||||| ||||| |||||||  |||||||||| |||    
T  28737910 cgtaggctagcaagcgctaaacctaaattgaaaagagtaagtttgcaagagacaaaacttgtgaaaatagagtttcagaatccaacagaaattgag-aaa 28737812  T
Q  190 actctccaaaaatattattgattaaataaaa 220  Q
    ||||| | ||||||||||||| | |||||||    
T  28737811 actct-ctaaaatattattgaatgaataaaa 28737782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 21772452 - 21772329
Alignment:
Q  86 ggaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgag 185  Q
    ||||||||||| |||| | ||||||||  |||| ||||| |||||||| |||||||||| |||| ||||||||||||| | |||||||  | ||||||||    
T  21772452 ggaagcgtaggttagccaacgctaaacttagattgaaaaaaacaagtttgcaagcgacaaacttatgaaaatagggttcctgaatccatcacaaattgag 21772353  T
Q  186 aaaaactctccaaaaatattattga 210  Q
     |||||||||   ||||||||||||    
T  21772352 -aaaactctcttgaaatattattga 21772329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 87 - 271
Target Start/End: Original strand, 32163783 - 32163963
Alignment:
Q  87 gaagcgtaggctagcaagcgctaaaccaagatagaaaagaac-aagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgag 185  Q
    |||||| ||||||| ||||| |||||| |||| ||||||||  ||||| | ||||| || ||||||||||||| ||||||||||||||  | ||||||||    
T  32163783 gaagcgaaggctagaaagcgttaaacctagattgaaaagaaataagtttgtaagcgtcaaacttgtgaaaatatggtttcggaatccatgataaattgag 32163882  T
Q  186 aaaaactctccaaaaatattattgattaaataaaataagttgcctcttaggttacaacaattaagtttaaatagggaagtaacaaa 271  Q
    ||||  |||| |||| ||||||||| | |||||||   ||| |||||||| | | |||  ||||| |||||||||||| |||||||    
T  32163883 aaaacttctctaaaa-tattattgaatgaataaaa---gtttcctcttagct-ataactgttaagcttaaatagggaaataacaaa 32163963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 158
Target Start/End: Complemental strand, 28738016 - 28737911
Alignment:
Q  52 gagaaaccttctctgatatcaattaacgtagtacggaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgt 151  Q
    |||||| || |||||||| ||| | ||| ||| ||||||||||| |||||||| |||||||| |||| ||||||| |||||| |||||||||| |||| |    
T  28738016 gagaaatctgctctgataccaactgacgcagt-cggaagcgtagtctagcaagtgctaaacctagattgaaaagagcaagtttgcaagcgacaaactttt 28737918  T
Q  152 gaaaata 158  Q
    |||||||    
T  28737917 gaaaata 28737911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 269
Target Start/End: Complemental strand, 25458257 - 25458138
Alignment:
Q  146 acttgtgaaaatagggtttcggaatccactagaaattgagaaaaactctccaaaaatattattgattaaataaaataagttgcctcttaggttacaacaa 245  Q
    |||||||||||||||||| ||  |||||||||||||||||||| | |||   |||||||||||||| |||| |   ||||| |||||||   |||||| |    
T  25458257 acttgtgaaaatagggttgcgatatccactagaaattgagaaacattct-ttaaaatattattgatgaaatca---aagttacctcttaaactacaacta 25458162  T
Q  246 ttaagtttaaatagggaagtaaca 269  Q
    ||||  ||||||||||||||||||    
T  25458161 ttaaacttaaatagggaagtaaca 25458138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 220
Target Start/End: Complemental strand, 36615285 - 36615153
Alignment:
Q  89 agcgtaggctagcaagcgctaaaccaagat-agaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgagaa 187  Q
    |||||||||||||| ||| |||||| | || | ||||||   |||| |||||||||| | |||| |||||| |||| |||||||||| ||||||| ||||    
T  36615285 agcgtaggctagcatgcgttaaacctatattaaaaaagatttagtttgcaagcgacaaaattgtaaaaataaggttccggaatccaccagaaattaagaa 36615186  T
Q  188 aaa-ctctccaaaaatattattgattaaataaaa 220  Q
    ||| ||||| |||| ||||||||||| |||||||    
T  36615185 aaaactctctaaaa-tattattgattgaataaaa 36615153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 129 - 220
Target Start/End: Complemental strand, 36649001 - 36648910
Alignment:
Q  129 aagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgag-aaaaactctccaaaaatattattgattaaataaaa 220  Q
    ||||| |||||||||| | |||| |||||||||||  ||||||||| ||||||| || ||||||||| | ||||||||||||||| |||||||    
T  36649001 aagtttgcaagcgacaaaattgtaaaaatagggttctggaatccaccagaaattaagaaaaaactct-ctaaaatattattgattgaataaaa 36648910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 12123950 - 12124012
Alignment:
Q  128 caagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgagaaaaa 190  Q
    |||||| |||||||||| || |||||||||| ||||  ||||||||| | |||||||||||||    
T  12123950 caagtttgcaagcgacaaacctgtgaaaatatggttcaggaatccaccaaaaattgagaaaaa 12124012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 2165956 - 2165899
Alignment:
Q  101 caagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaata 158  Q
    |||||| |||||| ||||||||||||||||||| |||||| ||| |||| | ||||||    
T  2165956 caagcgttaaacctagatagaaaagaacaagtttgcaagcaacaaacttatcaaaata 2165899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 83 - 278
Target Start/End: Original strand, 4888694 - 4888892
Alignment:
Q  83 tacggaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaatt 182  Q
    |||||||||||||||||||| ||||| |||| ||||||||||||||||||| |||||||||| || ||||||||||| ||| |||||| ||| |||||||    
T  4888694 tacggaagcgtaggctagcatgcgctgaacctagatagaaaagaacaagtttgcaagcgacaaacctgtgaaaatagagttccggaattcaccagaaatt 4888793  T
Q  183 gagaaaaactctccaaaaatattattgattaaataaa----ataagttgcctcttaggttacaacaattaagtttaaatagggaagtaacaaaccctaat 278  Q
    || ||| ||||| | ||||||||||||||| ||||||    |||||||| |||||||| ||||||  ||||| |||||||||||| |||||||| |||||    
T  4888794 gaaaaacactct-ctaaaatattattgattgaataaaagttataagttgtctcttaggatacaactgttaagcttaaatagggaaataacaaactctaat 4888892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 87 - 278
Target Start/End: Complemental strand, 30217890 - 30217696
Alignment:
Q  87 gaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgaga 186  Q
    ||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||| |||||||||||||| |||  | ||||||| || ||||||||    
T  30217890 gaagcgtaggctagcaagcgctaaacctagattgaaa-gaacaagttcgcaagcgacaaacttgtgaaaatagagttctgaaatccaccagtaattgaga 30217792  T
Q  187 -aaaactctccaaaaatattattgattaaataaa----ataagttgcctcttaggttacaacaattaagtttaaatagggaagtaacaaaccctaat 278  Q
     || ||||| | ||||||||||||||| ||||||    |||||||| || ||||||||||||  ||||| ||||| |||||| ||||||||||||||    
T  30217791 taacactct-ctaaaatattattgattgaataaaagttataagttgtcttttaggttacaactgttaagcttaaacagggaaataacaaaccctaat 30217696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 46 - 220
Target Start/End: Complemental strand, 1365788 - 1365616
Alignment:
Q  46 gaacaggagaaaccttctctgatatcaattaacgtagtacggaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacac 145  Q
    ||||||||||||||| |||||||| ||| | || |||||||||||  ||||||||||||||||||||| |||| |||| ||||||||| | ||||||       
T  1365788 gaacaggagaaacctgctctgataccaactgac-tagtacggaaggataggctagcaagcgctaaacctagattgaaaggaacaagtttgtaagcgatga 1365690  T
Q  146 acttgtgaaaatagggtttcggaatccactagaaattgagaaaaactctccaaaaatattattgattaaataaaa 220  Q
    |||||||||||||||||| |  ||||||| | ||||||||||||||||| | ||||||||||||| | |||||||    
T  1365689 acttgtgaaaatagggttccataatccaccaaaaattgagaaaaactct-ctaaaatattattgaatgaataaaa 1365616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 85 - 271
Target Start/End: Complemental strand, 1369884 - 1369702
Alignment:
Q  85 cggaagcgtaggctagcaagcgctaaaccaagatagaaaagaa-caagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattg 183  Q
    |||||||| ||||||||||||| |||||| |||| |||||||| |||||| |||||||| | |||||| ||||||||||| |||||||||| ||||||||    
T  1369884 cggaagcggaggctagcaagcgttaaacctagattgaaaagaaacaagtttgcaagcgataaacttgttaaaatagggttccggaatccaccagaaattg 1369785  T
Q  184 agaaaaactctccaaaaatattattgattaaataaaataagttgcctcttaggttacaacaattaagtttaaatagggaagtaacaaa 271  Q
    || ||||||||   ||||||||||||| | |||||   |||||| |||||||| |||||| |||||| ||||||||| || |||||||    
T  1369784 ag-aaaactct-ataaaatattattgaattaataa---aagttgtctcttaggctacaactattaagcttaaataggaaaataacaaa 1369702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 46 - 160
Target Start/End: Original strand, 13886130 - 13886245
Alignment:
Q  46 gaacaggagaaaccttctctgatatcaattaacgtagtacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgaca 144  Q
    ||||||||||||||| |||| ||| ||| | ||| |||||||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||    
T  13886130 gaacaggagaaacctgctctaataccaactgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgaca 13886229  T
Q  145 cacttgtgaaaatagg 160  Q
     |||||||||||||||    
T  13886230 aacttgtgaaaatagg 13886245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 271
Target Start/End: Original strand, 11000836 - 11001018
Alignment:
Q  85 cggaagcgtaggctagcaagcgctaaaccaagatagaaaagaa-caagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattg 183  Q
    |||||| |||||||||||||||||||||| |||| |||||||| ||||||||||||||||| ||| ||||||||||||||  ||||||||| ||||||||    
T  11000836 cggaagtgtaggctagcaagcgctaaacctagattgaaaagaaacaagttcgcaagcgacaaactagtgaaaatagggttcaggaatccaccagaaattg 11000935  T
Q  184 agaaaaactctccaaaaatattattgattaaataaaataagttgcctcttaggttacaacaattaagtttaaatagggaagtaacaaa 271  Q
     | |||||||| | ||||||||||||| | |||  ||||| |||||||||| | ||||||  ||||| ||||||| | || |||||||    
T  11000936 -ggaaaactct-ctaaaatattattgaatgaat--aataa-ttgcctcttaagctacaactgttaagcttaaataagaaaataacaaa 11001018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 106 - 271
Target Start/End: Complemental strand, 24840201 - 24840040
Alignment:
Q  106 gctaaaccaagatagaaaagaa-caagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgagaaaaactctccaaaaatat 204  Q
    |||||||| |||| |||||||| |||||| |||||||||| |||||||||||||||||| |||||||||| |||||||||| |||||||| | |||||||    
T  24840201 gctaaacctagattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggttccggaatccaccagaaattgag-aaaactct-ctaaaatat 24840104  T
Q  205 tattgattaaataaaataagttgcctcttaggttacaacaattaagtttaaatagggaagtaacaaa 271  Q
    |||| | |||||||   ||||||||||||||| |||||   ||||| |||| ||||||| |||||||    
T  24840103 tattcaataaataa---aagttgcctcttaggctacaatggttaagcttaattagggaaataacaaa 24840040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 87 - 189
Target Start/End: Complemental strand, 5934681 - 5934578
Alignment:
Q  87 gaagcgtaggctagcaagcgctaaaccaagatagaaaagaa-caagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgag 185  Q
    ||||||||||||||||||||||||||| |||| |||||||| ||| || |||||||||| ||||||||||||||| |||| ||||||| |||||||||||    
T  5934681 gaagcgtaggctagcaagcgctaaacctagattgaaaagaaacaaatttgcaagcgacaaacttgtgaaaataggatttcagaatccattagaaattgag 5934582  T
Q  186 aaaa 189  Q
    ||||    
T  5934581 aaaa 5934578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 85 - 274
Target Start/End: Original strand, 6451760 - 6451945
Alignment:
Q  85 cggaagcgtaggctagcaagcgctaaaccaagatagaaaagaa-caagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattg 183  Q
    |||||||| | |||| ||||||||||| | |||| |||| ||| |||||| |||||||||| || |||||||||| ||||||||||||||  | ||||||    
T  6451760 cggaagcgaaagctatcaagcgctaaatctagattgaaaggaaacaagtttgcaagcgacaaacctgtgaaaataaggtttcggaatccaacaaaaattg 6451859  T
Q  184 agaaaaactctccaaaaatattattgattaaataaaataagttgcctcttaggttacaacaattaagtttaaatagggaagtaacaaaccc 274  Q
    | |||||||||| |||| ||||||||| | ||| |||   |||| |||||||| ||||||  |||||||||||||||||| ||||||||||    
T  6451860 a-aaaaactctctaaaa-tattattgaatgaattaaa---gttgtctcttaggctacaactgttaagtttaaatagggaaataacaaaccc 6451945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 163
Target Start/End: Original strand, 13882692 - 13882775
Alignment:
Q  81 agtacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtt 163  Q
    |||||||||||||||| | ||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  13882692 agtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 13882775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 86 - 278
Target Start/End: Original strand, 3778720 - 3778915
Alignment:
Q  86 ggaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgag 185  Q
    |||||||||||||  ||||| |||||   |||| |||| ||||||||| |||||||| | |||||||||||||||||| |||||||||| ||||||||||    
T  3778720 ggaagcgtaggctgacaagcactaaatatagattgaaatgaacaagtttgcaagcgagaaacttgtgaaaatagggttccggaatccaccagaaattgag 3778819  T
Q  186 aaaaact---ctc-caaaaatattattgattaaataaaataagttgcctcttaggttacaacaattaagtttaaatagggaagtaacaaaccctaat 278  Q
    ||||| |   ||| | ||||||||||||||| |||||||    || ||||||||  ||||||  ||||| |||||||||||| |||||||| |||||    
T  3778820 aaaaattaaactctctaaaatattattgattgaataaaagttatt-cctcttagactacaaccgttaagcttaaatagggaaataacaaactctaat 3778915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 859164 - 859245
Alignment:
Q  83 tacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtt 163  Q
    |||||||||||||| | ||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  859164 tacggaagcgtaggattagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 859245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 1217168 - 1217249
Alignment:
Q  83 tacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtt 163  Q
    |||||||||||||| | ||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  1217168 tacggaagcgtaggattagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 1217249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 81 - 220
Target Start/End: Complemental strand, 2768009 - 2767875
Alignment:
Q  81 agtacggaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaa 180  Q
    |||||||||||||||| ||   | ||||||||| |||| |||| ||| |||||||||||||||  | ||| |||| |||||||||||||||||| |||||    
T  2768009 agtacggaagcgtaggtta---aacgctaaacctagattgaaaggaataagttcgcaagcgacgaatttgagaaa-tagggtttcggaatccaccagaaa 2767914  T
Q  181 ttgagaaaaactctccaaaaatattattgattaaataaaa 220  Q
    |||||||||||||| | ||||||||||| ||| |||||||    
T  2767913 ttgagaaaaactct-ctaaaatattattaattgaataaaa 2767875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 46 - 163
Target Start/End: Original strand, 1220410 - 1220529
Alignment:
Q  46 gaacaggagaaacctt-ctctgatatcaattaacgtagtacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgac 143  Q
    ||||||||||||||   |||||||| ||| ||||||||||| |||||||||| | ||||| ||||||||| | ||||||| ||||||||| |||| ||||    
T  1220410 gaacaggagaaaccaggctctgataccaactaacgtagtacagaagcgtagggttagcaaacgctaaacctacatagaaatgaacaagtttgcaaacgac 1220509  T
Q  144 acacttgtgaaaatagggtt 163  Q
    | ||||||||||||||||||    
T  1220510 aaacttgtgaaaatagggtt 1220529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 271
Target Start/End: Complemental strand, 1786763 - 1786580
Alignment:
Q  85 cggaagcgtaggct-agcaagcgctaaaccaagatagaaaag-aacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaatt 182  Q
    |||||||||||| | |||||| |||||||| ||||||||||  |||||||| |||||||||| || || |||||||||||| | |||||||  |||||||    
T  1786763 cggaagcgtaggattagcaagtgctaaacctagatagaaaaataacaagtttgcaagcgacaaacatgcgaaaatagggttccagaatccatcagaaatt 1786664  T
Q  183 gagaaaaactctccaaaaatattattgattaaataaaataagttgcctcttaggttacaacaattaagtttaaatagggaagtaacaaa 271  Q
    | | |||||||| | ||||||||||| | | |||||   ||||| ||||||||| ||||||  ||||| |||||||||||| |||||||    
T  1786663 gcg-aaaactct-ctaaaatattatttaatgaataa---aagtttcctcttaggctacaactgttaagcttaaatagggaaataacaaa 1786580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 271
Target Start/End: Complemental strand, 11229046 - 11228878
Alignment:
Q  99 agcaagcgctaaaccaagatagaaaa-gaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgagaaaaactctcca 197  Q
    |||||| |||||||| |||| ||||| ||||||||| ||| |||||| || |||||||| |||||| | |||||||| |||||||||  |||||||| |     
T  11229046 agcaagtgctaaacctagattgaaaaagaacaagtttgcaggcgacaaacgtgtgaaaaaagggttccagaatccaccagaaattga-taaaactct-ct 11228949  T
Q  198 aaaatattattgattaaataaaataagttgcctcttaggttacaacaattaagtttaaatagggaagtaacaaa 271  Q
    ||||||||||||| | |||||   ||||||||||||| | |||||   ||||| |||||||||||| |||||||    
T  11228948 aaaatattattgagtgaataa---aagttgcctcttatgctacaaatgttaagcttaaatagggaaataacaaa 11228878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 189
Target Start/End: Complemental strand, 27142745 - 27142640
Alignment:
Q  85 cggaagcgtaggctagcaagcgctaaaccaagatagaaaagaa-caagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattg 183  Q
    |||| |||||| |||||||  | |||||| |||| |||||||| |||||| |||||||||| |||||||||||||||||| | ||| |||| ||||||||    
T  27142745 cggatgcgtagcctagcaatggttaaacctagattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggttcctgaaaccaccagaaattg 27142646  T
Q  184 agaaaa 189  Q
    ||||||    
T  27142645 agaaaa 27142640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 215
Target Start/End: Complemental strand, 1874656 - 1874490
Alignment:
Q  46 gaacaggagaaaccttctctgatatcaattaacgtagtacggaagcgtaggctagcaagcgctaaaccaagatagaaaag-aacaagttcgcaagcgaca 144  Q
    |||||||||| |||| ||| |||| ||| | |||||||||||||||||| | |||||| | |||||||  ||| |||||| |||||||| |||| |||||    
T  1874656 gaacaggagatacctgctccgataccaactgacgtagtacggaagcgtatgttagcaaacactaaaccttgattgaaaagaaacaagtttgcaaacgaca 1874557  T
Q  145 cacttgtgaaaatagggtttcggaatccactagaaattgagaaaaactctccaaaaatattattgattaaa 215  Q
     ||||||||||||| ||||   ||||||||    ||||||| |||||||| | ||||||||||||| ||||    
T  1874556 aacttgtgaaaataaggttcaagaatccac---caattgaggaaaactct-ctaaaatattattgaataaa 1874490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 62 - 200
Target Start/End: Complemental strand, 1883591 - 1883457
Alignment:
Q  62 ctctgatatcaattaacgtagtacggaagcgtaggctagcaagcgctaaaccaagatagaaaag-aacaagttcgcaagcgacacacttgtgaaaatagg 160  Q
    |||||| | ||| |||||||||||| ||||||| |||||||| | ||||||| |||| |||||| |||||||| |||| ||||| ||||||||||||| |    
T  1883591 ctctgacaccaactaacgtagtacgtaagcgtatgctagcaaacactaaacctagattgaaaagaaacaagtttgcaaacgacaaacttgtgaaaataag 1883492  T
Q  161 gtttcggaatccactagaaattgagaaaaactctccaaaa 200  Q
    ||| | ||||| ||     |||||||||||||||| ||||    
T  1883491 gttccagaatcaac-----attgagaaaaactctctaaaa 1883457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 46 - 258
Target Start/End: Original strand, 8916349 - 8916556
Alignment:
Q  46 gaacaggagaaaccttctctgatatcaattaacgtagtacggaagcgtaggctagcaagcgctaaaccaagatagaaaa-gaacaagttcgcaagcgaca 144  Q
    ||||| ||||||||| ||||| || ||| | ||| ||| | |||||||| ||||| ||||| |||||| ||||  |||| ||||||||| |||| ||| |    
T  8916349 gaacaagagaaacctactctgttaccaactgacgcagt-cagaagcgtatgctagtaagcgttaaacctagatttaaaatgaacaagtttgcaaacgata 8916447  T
Q  145 cacttgtgaaaatagggtttcggaatccactagaaattgagaaaaactctccaaaaatattattgattaaataaaataagttgcctcttaggttacaaca 244  Q
     ||||||| |||||| |||  ||||||||| |||||||||| |||||||| | ||||||||||||| | |||||   ||||| ||||||| ||||||||     
T  8916448 aacttgtggaaatagagttctggaatccaccagaaattgag-aaaactct-ctaaaatattattgaatgaataa---aagtttcctcttatgttacaact 8916542  T
Q  245 attaagtttaaata 258  Q
     ||||| |||||||    
T  8916543 gttaagcttaaata 8916556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 27309638 - 27309704
Alignment:
Q  98 tagcaagcgctaaaccaagatagaaaagaa-caagttcgcaagcgacacacttgtgaaaatagggtt 163  Q
    |||||||||||||||| |||| |||||||| |||||| |||||||||| ||||||||||||||||||    
T  27309638 tagcaagcgctaaacctagattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggtt 27309704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 174
Target Start/End: Original strand, 7803037 - 7803131
Alignment:
Q  81 agtacggaagcgtaggctagcaagcgctaaaccaagatagaaaag-aacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccac 174  Q
    |||||||||||||||| ||||||| | |||||| || | |||||| |||||||| |||||| ||| |||| |||||||| |||| ||||||||||    
T  7803037 agtacggaagcgtaggttagcaagggttaaacctaggtcgaaaagaaacaagtttgcaagcaacaaacttatgaaaataaggttccggaatccac 7803131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 189
Target Start/End: Original strand, 4133284 - 4133389
Alignment:
Q  85 cggaagcgtaggctagcaagcgctaaaccaagatagaaaa-gaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattg 183  Q
    |||||||||||||||||||  |||||||  |||| ||| | |||||| ||  ||||||||| |||||||||||||| |||  | ||||| ||||||||||    
T  4133284 cggaagcgtaggctagcaaatgctaaacttagattgaagatgaacaaattttcaagcgacaaacttgtgaaaatagagttctgaaatcccctagaaattg 4133383  T
Q  184 agaaaa 189  Q
    ||||||    
T  4133384 agaaaa 4133389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 29175838 - 29175780
Alignment:
Q  83 tacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagc 140  Q
    |||||||||||||| | ||||||||||||||| |||| |||||||| ||||| ||||||    
T  29175838 tacggaagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagc 29175780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 45366081 - 45366015
Alignment:
Q  119 agaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgag 185  Q
    ||||||||| ||||| || ||||||| || | |||||||||| |||| ||||||| |||||||||||    
T  45366081 agaaaagaataagtttgctagcgacaaacctatgaaaataggatttcagaatccattagaaattgag 45366015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 175
Target Start/End: Complemental strand, 13466808 - 13466719
Alignment:
Q  87 gaagcgtaggctagcaagcgctaaaccaagatagaaaagaa-caagttcgcaagcgacacacttgtgaaaatagggtttcggaatccact 175  Q
    |||| |||| ||||||||||||||||| | ||  ||||||| |||||| ||||   ||| |||| ||||||||||||| |||||||||||    
T  13466808 gaagagtagcctagcaagcgctaaacctatattaaaaagaaacaagtttgcaaaaaacaaacttatgaaaatagggttccggaatccact 13466719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 77 - 273
Target Start/End: Complemental strand, 31915636 - 31915444
Alignment:
Q  77 acgtagtacggaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccacta 176  Q
    |||||||||||||||| |||||||||||| ||||||  || | ||||  |||||||| |||||||||| |||||||||||||||||| |||||||||| |    
T  31915636 acgtagtacggaagcgcaggctagcaagcactaaacttaggttgaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggttccggaatccacca 31915537  T
Q  177 gaaattgagaaaaactctccaaaaatattattgattaaataaaataagttgcctcttaggttacaacaattaagtttaaatagggaagtaacaaacc 273  Q
    |||||||||||||||||| | |||||| || ||||| |||||   |||||  |||||||| |||| |  ||||| |||||||||||| |||||||||    
T  31915536 gaaattgagaaaaactct-ctaaaatactactgattgaataa---aagttatctcttaggctacatctgttaagcttaaatagggaaataacaaacc 31915444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 85 - 220
Target Start/End: Complemental strand, 50713792 - 50713658
Alignment:
Q  85 cggaagcgtaggctagcaagcgctaaaccaagatagaaaaga-acaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattg 183  Q
    ||||| ||||||||| ||| ||||||||| |||| ||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||    
T  50713792 cggaaacgtaggctaacaaccgctaaacctagattgaaaagagacaagttcgcaggcgacaaacttgtgaaaatagggtttcggaatccaccagaaattg 50713693  T
Q  184 agaaaaactctccaaaaatattattgattaaataaaa 220  Q
    || |||||||| ||||||||||||||| | |||||||    
T  50713692 ag-aaaactct-caaaaatattattgaatgaataaaa 50713658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 220
Target Start/End: Original strand, 28660727 - 28660891
Alignment:
Q  55 aaaccttctctgatatcaattaacgtagtacggaagcgtaggctagcaagcgctaaaccaagatagaaaagaa-caagttcgcaagcgacacacttgtga 153  Q
    |||||| |||||||| ||| | ||||||| |||||||||||| |||||| ||||||||| ||||||| ||||| |||||| |||||||||| ||||||||    
T  28660727 aaacctactctgataccaactgacgtagt-cggaagcgtaggatagcaaacgctaaacctagatagataagaaacaagtttgcaagcgacaaacttgtga 28660825  T
Q  154 aaatagggtttcggaatccactag-aaattgagaaaaactctccaaaaatattattgattaaataaaa 220  Q
    |||||||||| || ||||||| || ||||| || |||||||| | ||||||||||||| | |||||||    
T  28660826 aaatagggttccgaaatccaccagaaaatttag-aaaactct-ctaaaatattattgaattaataaaa 28660891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 189
Target Start/End: Complemental strand, 12944192 - 12944090
Alignment:
Q  88 aagcgtaggctagcaagcgctaaaccaagatagaaaagaa-caagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgaga 186  Q
    |||||||||||||||||||||||| | |||| |||||||| |||||| |||| ||||| |||||| |||||||||||  ||||||||| |||||||||||    
T  12944192 aagcgtaggctagcaagcgctaaatctagattgaaaagaaacaagtttgcaaacgacaaacttgtaaaaatagggttctggaatccaccagaaattgaga 12944093  T
Q  187 aaa 189  Q
    |||    
T  12944092 aaa 12944090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 94 - 271
Target Start/End: Complemental strand, 10927262 - 10927091
Alignment:
Q  94 aggctagcaagcgctaaaccaagatagaaaa-gaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgagaaaaact 192  Q
    |||||||||| ||||||||| |||  ||||| ||||||||| |||||||||| ||||||||||  |||||| |||||||||| |||||||||| ||||||    
T  10927262 aggctagcaaacgctaaacctagactgaaaaagaacaagtttgcaagcgacaaacttgtgaaa--agggttccggaatccaccagaaattgag-aaaact 10927166  T
Q  193 ctccaaaaatattattgattaaataaaataagttgcctcttaggttacaacaattaagtttaaatagggaagtaacaaa 271  Q
    || | ||||||||||| | | |||||   |||||| |||||||| |||||   ||||| |||||||||||| |||||||    
T  10927165 ct-ctaaaatattatttaatgaataa---aagttgtctcttaggctacaattgttaagattaaatagggaaataacaaa 10927091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 189
Target Start/End: Complemental strand, 10928367 - 10928263
Alignment:
Q  86 ggaagcgtaggctagcaagcgctaaaccaagatagaaaaga-acaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattga 184  Q
    ||||||||||||||||||| |||||||| ||||  |||||| | ||||| | ||| |||| ||||||||||||| ||||||||||||||||| |||||||    
T  10928367 ggaagcgtaggctagcaagtgctaaacctagattaaaaagatataagtttgtaagtgacaaacttgtgaaaataaggtttcggaatccactataaattga 10928268  T
Q  185 gaaaa 189  Q
    |||||    
T  10928267 gaaaa 10928263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 81 - 163
Target Start/End: Original strand, 50857450 - 50857533
Alignment:
Q  81 agtacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtt 163  Q
    |||||||||||||||| | ||||||||||||||| ||||||||||||| ||||| | |||||||| ||||||||||||||||||    
T  50857450 agtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaataagtttgtaagcgacaaacttgtgaaaatagggtt 50857533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 189
Target Start/End: Complemental strand, 8221567 - 8221462
Alignment:
Q  85 cggaagcgtaggctagcaagcgctaaaccaagatagaaaaga-acaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattg 183  Q
    |||| |||||||||||| || ||||||||||||| ||| ||| ||||||| |||| ||||| |||| |||||||||||||  ||||||||| ||||||||    
T  8221567 cggatgcgtaggctagctagtgctaaaccaagattgaatagagacaagtttgcaaacgacaaacttatgaaaatagggttctggaatccaccagaaattg 8221468  T
Q  184 agaaaa 189  Q
    ||||||    
T  8221467 agaaaa 8221462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 271
Target Start/End: Complemental strand, 10925816 - 10925637
Alignment:
Q  85 cggaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattga 184  Q
    |||||||| |||||||||||||||||||| | || ||||  ||||| || |||||||||| |||||| |||||| ||||  |||||||||   |||||||    
T  10925816 cggaagcggaggctagcaagcgctaaacctaaattgaaa--aacaattttgcaagcgacaaacttgtaaaaatatggttctggaatccaccgaaaattga 10925719  T
Q  185 gaaaaactctccaaaaatattattgattaaataaaataagttgcctcttaggttacaacaattaagtttaaatagggaagtaacaaa 271  Q
     ||||||||| | ||||||||||||| | |||||   ||||| ||||||| | ||||||  |||| ||||||||||||| |||||||    
T  10925718 -aaaaactct-ctaaaatattattgaatgaataa---aagtttcctcttaagctacaactgttaaatttaaatagggaaataacaaa 10925637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 85 - 221
Target Start/End: Complemental strand, 23987655 - 23987516
Alignment:
Q  85 cggaagcgtaggctagcaagcgctaaaccaagatagaaaa-gaacaagttcgcaagcgacacacttgtgaaaatag----ggtttcggaatccactagaa 179  Q
    |||||||||||| ||||||||||| |||| |||||||||| |||||| || |||| ||||| |||||||||||||     |||| |||||||||| ||||    
T  23987655 cggaagcgtagggtagcaagcgctgaacctagatagaaaaagaacaactttgcaaacgacaaacttgtgaaaatatagaaggttccggaatccaccagaa 23987556  T
Q  180 attgagaaaaactctccaaaaatattattgattaaataaaat 221  Q
    ||||||| || ||||| |||| ||||||||||| ||||||||    
T  23987555 attgagataa-ctctctaaaa-tattattgattgaataaaat 23987516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 163
Target Start/End: Complemental strand, 8931303 - 8931220
Alignment:
Q  81 agtacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtt 163  Q
    |||||||||||||||| | ||||||||||||||| |||| ||||| |||||||| |||||||| | ||||||||||||||||||    
T  8931303 agtacggaagcgtagggttagcaagcgctaaacctagattgaaaaaaacaagtttgcaagcgataaacttgtgaaaatagggtt 8931220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 160
Target Start/End: Original strand, 13443959 - 13444074
Alignment:
Q  46 gaacaggagaaaccttctctgatatcaattaacgtagtacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgaca 144  Q
    ||||| || |||||| |||||||| ||| | ||| ||| ||||||| |||| | | ||||| ||||||| ||||||||||||||||||| ||||||||||    
T  13443959 gaacatgataaacctgctctgataccaactgacgcagttcggaagcatagggttaacaagcactaaacctagatagaaaagaacaagtttgcaagcgaca 13444058  T
Q  145 cacttgtgaaaatagg 160  Q
     |||||||||||||||    
T  13444059 aacttgtgaaaatagg 13444074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 215
Target Start/End: Original strand, 40058109 - 40058243
Alignment:
Q  82 gtacggaagcgtaggctagcaagcgctaaaccaagatagaaaag-aacaagttcgcaagcgacacacttgtg-aaaatagggtttcggaatccactagaa 179  Q
    ||||||||||||||||||||||||  |||||| | ||||||||| || ||||| |||||||||| |||| || ||||||||||||| ||||| || |  |    
T  40058109 gtacggaagcgtaggctagcaagcagtaaacctaaatagaaaagaaataagtttgcaagcgacaaacttatgaaaaatagggtttcagaatcaaccaaca 40058208  T
Q  180 attgagaaaaactctccaaaaatattattgattaaa 215  Q
    |||||||||||||| |  ||||||||||||| ||||    
T  40058209 attgagaaaaactc-cataaaatattattgaataaa 40058243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 181
Target Start/End: Complemental strand, 31913453 - 31913359
Alignment:
Q  87 gaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaat 181  Q
    ||||| ||||||||||||||||||||| || | ||||  |||||||| |||||||||| |||||| |||||||| || || ||||||| ||||||    
T  31913453 gaagcataggctagcaagcgctaaacctaggttgaaagaaacaagtttgcaagcgacaaacttgtaaaaataggtttccgaaatccaccagaaat 31913359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 220
Target Start/End: Complemental strand, 43681535 - 43681404
Alignment:
Q  91 cgtaggctagcaagcgctaaaccaagatagaaaagaa--caagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgagaaa 188  Q
    |||| |||||||||||||||||| |||| ||||| ||  |||||| |||||||||| | |||||||||||| | | | ||||| || ||||||| |||||    
T  43681535 cgtatgctagcaagcgctaaacctagattgaaaaaaaaacaagtttgcaagcgacaaatttgtgaaaatagagatccagaatctaccagaaattaagaaa 43681436  T
Q  189 aactctccaaaaatattattgattaaataaaa 220  Q
    |  ||||  ||||||||||||| | |||||||    
T  43681435 acttctcttaaaatattattgaatgaataaaa 43681404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 271
Target Start/End: Original strand, 33152771 - 33152914
Alignment:
Q  126 aacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgagaaaaactctcca-aaaatattattgattaaataaaataag 224  Q
    |||||||| |||||||||| ||||  || ||||||||| |||||||||| ||||||| |||||||  ||| | ||||||||||||||| |||||  ||||    
T  33152771 aacaagtttgcaagcgacaaacttacgacaatagggttccggaatccaccagaaattaagaaaaaa-ctctataaaatattattgattgaataa--taag 33152867  T
Q  225 ttgcctcttaggttacaacaattaagtttaaatagggaagtaacaaa 271  Q
    ||  |||||||  |||| |  ||||| |||||||||||| |||||||    
T  33152868 ttatctcttagactacatctgttaagcttaaatagggaaataacaaa 33152914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 271
Target Start/End: Complemental strand, 9031096 - 9030914
Alignment:
Q  85 cggaagcgtaggctagcaagcgctaaaccaagatagaaaag-aacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattg 183  Q
    ||||||||||||||||||||  ||||||| | || |||||| || ||||| |||||| | | |||| |||||||||||||   |||||||| | ||||||    
T  9031096 cggaagcgtaggctagcaagtactaaacctatattgaaaaggaataagtttgcaagcaataaacttatgaaaatagggttgtagaatccaccataaattg 9030997  T
Q  184 agaaaaactctccaaaaatattattgattaaataaaataagttgcctcttaggttacaacaattaagtttaaatagggaagtaacaaa 271  Q
    ||||||  |||| |||| ||||||||| | |||||||   ||| || |||| ||||||||  ||||  |||||||||||| |||||||    
T  9030996 agaaaacttctctaaaa-tattattgaatgaataaaa---gtt-ccacttaagttacaactgttaaacttaaatagggaaataacaaa 9030914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 189
Target Start/End: Complemental strand, 21903830 - 21903726
Alignment:
Q  85 cggaagcgtaggctagcaagcgctaaaccaagatagaaaagaac-aagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattg 183  Q
    |||||| ||||| ||  |||||||||||  |||| ||||||||  ||||| | | |||||| ||||||||||||||||||||||||||||| | ||||||    
T  21903830 cggaagagtaggttaataagcgctaaacttagattgaaaagaaataagtttgtaggcgaca-acttgtgaaaatagggtttcggaatccacaaaaaattg 21903732  T
Q  184 agaaaa 189  Q
    ||||||    
T  21903731 agaaaa 21903726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 174
Target Start/End: Original strand, 28661078 - 28661168
Alignment:
Q  85 cggaagcgtaggctagcaagcgctaaaccaagatagaaaag-aacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccac 174  Q
    |||||||||||||||||||| |||||||| | || || ||| |||||||| |||||||| | || ||| |||||||||||||  |||||||    
T  28661078 cggaagcgtaggctagcaagtgctaaacctaaattgataagaaacaagtttgcaagcgaaaaacctgtaaaaatagggtttcaaaatccac 28661168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 239766 - 239677
Alignment:
Q  85 cggaagcgtaggctagcaagcgctaaaccaagatagaaaagaa-caagttcgcaagcgacacacttgtgaaaatagggtttcggaatcca 173  Q
    |||||||||||||||||||| |||||||  | ||  ||||||| |||||| ||||||| || | || ||||||||||||| |||||||||    
T  239766 cggaagcgtaggctagcaagggctaaacttatattaaaaagaaacaagttagcaagcgtcaaatttatgaaaatagggttccggaatcca 239677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 189
Target Start/End: Original strand, 8967815 - 8967919
Alignment:
Q  87 gaagcgtaggctagcaagcgctaaaccaagataga--aaagaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattga 184  Q
    |||||| ||||| ||||||| |||||| |||||||  |||||||||||| ||||  |||| || | ||||||||||||| | |||||||| | ||||||     
T  8967815 gaagcgaaggctcgcaagcgttaaacctagatagagaaaagaacaagtttgcaaatgacaaacctatgaaaatagggttccagaatccaccaaaaattgt 8967914  T
Q  185 gaaaa 189  Q
    |||||    
T  8967915 gaaaa 8967919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 141
Target Start/End: Original strand, 13441612 - 13441673
Alignment:
Q  81 agtacggaagcgta-ggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcg 141  Q
    |||||||||| ||| || |||||||||||||||  |||||||||||||||| || |||||||    
T  13441612 agtacggaagagtatggttagcaagcgctaaacttagatagaaaagaacaattttgcaagcg 13441673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 46 - 220
Target Start/End: Original strand, 2189693 - 2189865
Alignment:
Q  46 gaacaggagaaaccttctctgatatcaattaacgtagtacggaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacac 145  Q
    ||||| ||||||| | |||||||| ||| | ||| |||||||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||||     
T  2189693 gaacatgagaaacatgctctgataccaactgacgcagtacggaagcgtaggctagcaagcgctaaacctcgattgaaaagaacaagtttgcaagcgacaa 2189792  T
Q  146 acttgtgaaaatagggtttcggaatccactagaaattgag-aaaaactctccaaaaatattattgattaaataaaa 220  Q
    ||||||||||||| ||||| ||||||||| | ||| |||| |||||||||   ||| ||||||||||| |||||||    
T  2189793 acttgtgaaaataaggttttggaatccaccaaaaaatgagaaaaaactct---aaagtattattgattgaataaaa 2189865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 50 - 189
Target Start/End: Complemental strand, 26375013 - 26374874
Alignment:
Q  50 aggagaaaccttctctgatatcaattaacgtagtacggaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacactt 149  Q
    ||||||||||| |||||||| ||| | | | |||| | ||||||| ||||||||||| ||| || |||| ||||||||||||||||||||||||| ||||    
T  26375013 aggagaaacctgctctgataccaactgatgcagtaggaaagcgtaagctagcaagcgttaagcctagattgaaaagaacaagttcgcaagcgacaaactt 26374914  T
Q  150 gtgaaaatagggtttcggaatccactagaaattgagaaaa 189  Q
    || |||||||||||||| ||||||| ||||||| ||||||    
T  26374913 gtaaaaatagggtttcgaaatccaccagaaattaagaaaa 26374874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 46 - 163
Target Start/End: Original strand, 22512017 - 22512135
Alignment:
Q  46 gaacaggagaaaccttctctgatatcaattaacgtagtacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgaca 144  Q
    ||||||||||||||| |||||||| ||| | ||| |||||||||| ||||| | ||||||||||||||| || |||||||||||||||| ||||||||||    
T  22512017 gaacaggagaaacctgctctgataccaactgacgcagtacggaagtgtagggttagcaagcgctaaacctaggtagaaaagaacaagtttgcaagcgaca 22512116  T
Q  145 cacttgtgaaaatagggtt 163  Q
     ||||||||||||||||||    
T  22512117 aacttgtgaaaatagggtt 22512135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 46 - 163
Target Start/End: Original strand, 22519317 - 22519435
Alignment:
Q  46 gaacaggagaaaccttctctgatatcaattaacgtagtacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgaca 144  Q
    ||||||||||||||| |||||||| ||| | ||| |||||||||| ||||| | ||||||||||||||| || |||||||||||||||| ||||||||||    
T  22519317 gaacaggagaaacctgctctgataccaactgacgcagtacggaagtgtagggttagcaagcgctaaacctaggtagaaaagaacaagtttgcaagcgaca 22519416  T
Q  145 cacttgtgaaaatagggtt 163  Q
     ||||||||||||||||||    
T  22519417 aacttgtgaaaatagggtt 22519435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 46 - 163
Target Start/End: Original strand, 22926619 - 22926737
Alignment:
Q  46 gaacaggagaaaccttctctgatatcaattaacgtagtacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgaca 144  Q
    ||||||| ||||||| |||||||  ||| | |||||||||||||||||||| | || |||||||||||| ||||||||||||||||||| ||||||||||    
T  22926619 gaacaggggaaacctgctctgatgccaactgacgtagtacggaagcgtagggttagaaagcgctaaacctagatagaaaagaacaagtttgcaagcgaca 22926718  T
Q  145 cacttgtgaaaatagggtt 163  Q
     ||||||||||||||||||    
T  22926719 aacttgtgaaaatagggtt 22926737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 42891639 - 42891753
Alignment:
Q  50 aggagaaaccttctctgatatcaattaacgtagtacggaagcgtagg-ctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacact 148  Q
    ||||||||||| || ||||| ||| | ||| | |||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||| |||    
T  42891639 aggagaaacctgctttgataccaactgacgcaatacggaagcgtagggctagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaact 42891738  T
Q  149 tgtgaaaatagggtt 163  Q
    |||||||||||||||    
T  42891739 tgtgaaaatagggtt 42891753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 46 - 161
Target Start/End: Complemental strand, 42890508 - 42890394
Alignment:
Q  46 gaacaggagaaaccttctctgatatcaattaacgtagtacggaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacac 145  Q
    ||||||||||||||| |||||||| ||| | ||| | |  | |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||     
T  42890508 gaacaggagaaacctgctctgataccaactgacgcaattag-aagcgtaggctagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaa 42890410  T
Q  146 acttgtgaaaataggg 161  Q
    ||||||||||||||||    
T  42890409 acttgtgaaaataggg 42890394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 85 - 271
Target Start/End: Complemental strand, 14130244 - 14130062
Alignment:
Q  85 cggaagcgtaggctagcaagcgctaaaccaagatagaaaaga-acaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattg 183  Q
    |||||||||||||| ||||||| |||| | |||| ||||||| ||||||| |||||||| | | ||||||||||| |||| |||||||||| ||||||||    
T  14130244 cggaagcgtaggcttgcaagcgttaaatctagatcgaaaagagacaagtttgcaagcgataaatttgtgaaaataaggttccggaatccaccagaaattg 14130145  T
Q  184 agaaaaactctccaaaaatattattgattaaataaaataagttgcctcttaggttacaacaattaagtttaaatagggaagtaacaaa 271  Q
    || |||||||||| ||||||||||||| | |||||   ||||||||||||||  |||||   ||||| ||||||| |||| |||||||    
T  14130144 ag-aaaactctcc-aaaatattattgaatgaataa---aagttgcctcttagactacaattgttaagcttaaataaggaaataacaaa 14130062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 81 - 189
Target Start/End: Complemental strand, 24731310 - 24731201
Alignment:
Q  81 agtacggaagcgtaggctagcaagcgctaaaccaagatagaaaag-aacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaa 179  Q
    ||||||| ||||||||||||||||||||||||| |||| |||||| |||||||| |||||| ||| |||||||||||||| |||||||||| ||  ||||    
T  24731310 agtacgggagcgtaggctagcaagcgctaaacctagattgaaaaggaacaagtttgcaagcaacaaacttgtgaaaatagagtttcggaattcatcagaa 24731211  T
Q  180 attgagaaaa 189  Q
    ||||||||||    
T  24731210 attgagaaaa 24731201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 46 - 189
Target Start/End: Complemental strand, 2687859 - 2687716
Alignment:
Q  46 gaacaggagaaaccttctctgatatcaattaacgtagtacggaagcgtaggctagcaagcgctaaaccaagatagaaaa-gaacaagttcgcaagcgaca 144  Q
    ||||||||||||||| |||||||| ||  | | | ||| |||||||| || ||||| ||||||||||| |||||||||| ||||||||| ||||||||||    
T  2687859 gaacaggagaaacctgctctgataccacctgatgcagt-cggaagcgaagactagcgagcgctaaacctagatagaaaaagaacaagtttgcaagcgaca 2687761  T
Q  145 cacttgtgaaaatagggtttcggaatccactagaaattgagaaaa 189  Q
     ||||||||||||||||||   |||||||| ||||||||||||||    
T  2687760 aacttgtgaaaatagggttctagaatccacaagaaattgagaaaa 2687716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 98 - 186
Target Start/End: Complemental strand, 18468714 - 18468626
Alignment:
Q  98 tagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgaga 186  Q
    |||||||||||||||| || |||||||||||||| | |||||||||| |||||||||||||||||| |||||||||| |||||||||||    
T  18468714 tagcaagcgctaaacctaggtagaaaagaacaagcttgcaagcgacaaacttgtgaaaatagggttccggaatccaccagaaattgaga 18468626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 278
Target Start/End: Complemental strand, 24731115 - 24730920
Alignment:
Q  81 agtacggaagcgtaggctagcaagcgctaaaccaagatagaaaag-aacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaa 179  Q
    ||||| ||| |||||||||||||||||||||   |||| |||||| |||||||| |||||| ||| ||||||||||||||| ||||||||||||  | ||    
T  24731115 agtacagaaccgtaggctagcaagcgctaaatttagattgaaaaggaacaagtttgcaagcaacaaacttgtgaaaataggatttcggaatccatcaaaa 24731016  T
Q  180 attgagaaaaactctccaaaaatattattgattaaataaaataagttgcctcttaggtta--caacaattaagtttaaatagggaagtaacaaaccctaa 277  Q
    |||||| |||||||| | ||||||||||||| | |||||   |||||  || ||||| ||  ||||  |||||||||||||||||| |||||||||||||    
T  24731015 attgag-aaaactct-ctaaaatattattgaatgaataa---aagttatctattaggctattcaactgttaagtttaaatagggaaataacaaaccctaa 24730921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 81 - 163
Target Start/End: Original strand, 22921856 - 22921939
Alignment:
Q  81 agtacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtt 163  Q
    |||||||||||||||| | ||||||||||||||| ||||||||||||| ||||| |||||||||| ||||||||||||||||||    
T  22921856 agtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaataagtttgcaagcgacaaacttgtgaaaatagggtt 22921939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 163
Target Start/End: Complemental strand, 37189984 - 37189866
Alignment:
Q  46 gaacaggagaaaccttctctgatatcaattaacgtagtacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgaca 144  Q
    |||||| ||||| || |||||||| ||||| ||| ||||||||||| |||| | ||||||| ||||| | ||||||||||||| ||||| ||||||||||    
T  37189984 gaacagaagaaatctgctctgataccaattgacgcagtacggaagcttagggttagcaagctctaaaactagatagaaaagaataagtttgcaagcgaca 37189885  T
Q  145 cacttgtgaaaatagggtt 163  Q
     ||||||||||||||||||    
T  37189884 aacttgtgaaaatagggtt 37189866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 163
Target Start/End: Complemental strand, 23570665 - 23570584
Alignment:
Q  83 tacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtt 163  Q
    |||||||||||||| | ||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||| ||||    
T  23570665 tacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaataaggtt 23570584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 81 - 163
Target Start/End: Complemental strand, 6845419 - 6845336
Alignment:
Q  81 agtacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtt 163  Q
    |||||||||||||||| | ||||||||||||||| |||||||||||||||||||  ||||||| | ||||||||||||||||||    
T  6845419 agtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttacaagcgataaacttgtgaaaatagggtt 6845336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 26378087 - 26378030
Alignment:
Q  77 acgtagtacggaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttc 134  Q
    ||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||    
T  26378087 acgtagtacggaagcgtaggctagcaagcgctaaatctagattgaaaagaacaagttc 26378030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 189
Target Start/End: Complemental strand, 20693877 - 20693773
Alignment:
Q  86 ggaagcgtaggctagcaagcgctaaaccaagatagaaaagaa-caagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattga 184  Q
    |||||||||||||||| || | |||||| |||| ||||| || |||||| |||||||||| | ||||||||||| |||| |||||||||  |||||||||    
T  20693877 ggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaatttgtgaaaatatggttccggaatccatcagaaattga 20693778  T
Q  185 gaaaa 189  Q
    |||||    
T  20693777 gaaaa 20693773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 271
Target Start/End: Original strand, 24578804 - 24578969
Alignment:
Q  102 aagcgctaaaccaagatagaaaagaa-caagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgagaaaaactctccaaaa 200  Q
    |||||||||||| |||| |||||||| |||||| |||||||  | |  |||||||||||||||  |||||||||||||||||| | |||||||| | |||    
T  24578804 aagcgctaaacctagatcgaaaagaaacaagtttgcaagcggtaaatctgtgaaaatagggttctggaatccactagaaattgtg-aaaactct-ctaaa 24578901  T
Q  201 atattattgattaaataaaataagttgcctcttaggttacaacaattaagtttaaatagggaagtaacaaa 271  Q
    |||||||| | |||||||   |||||||| |||| | |||||   ||||| |||||||||||| |||||||    
T  24578902 atattatttaataaataa---aagttgccccttaagctacaaatgttaagcttaaatagggaaataacaaa 24578969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 46 - 113
Target Start/End: Original strand, 18180684 - 18180751
Alignment:
Q  46 gaacaggagaaaccttctctgatatcaattaacgtagtacggaagcgtaggctagcaagcgctaaacc 113  Q
    ||||||||||||||| || ||||| ||| | ||| |||||||||||||||||||||||||||||||||    
T  18180684 gaacaggagaaacctgctttgataccaactgacgcagtacggaagcgtaggctagcaagcgctaaacc 18180751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 220
Target Start/End: Complemental strand, 16598365 - 16598193
Alignment:
Q  48 acaggagaaaccttctctgatatcaattaacgtagtacggaagcgtaggctagcaagcgctaaaccaagat-agaaaagaacaagttcgcaagcgacaca 146  Q
    ||||||||||||| |||| ||| ||| |||||||  ||||||||   || |||||||||||||||  |||| |||||  |||||||| ||| |||||| |    
T  16598365 acaggagaaacctactctaataccaactaacgtaaaacggaagcaatggttagcaagcgctaaacttagattagaaagaaacaagtttgcacgcgacaaa 16598266  T
Q  147 cttgtgaaaatagggtttcggaatccactag-aaattgagaaaaactctccaaaaatattattgattaaataaaa 220  Q
    ||||||||||||||||| |  ||| ||| || |||||||| |||||||| | ||||||||||||| | |||||||    
T  16598265 cttgtgaaaatagggttccaaaatacaccagtaaattgag-aaaactct-ctaaaatattattgaatgaataaaa 16598193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 22520810 - 22520888
Alignment:
Q  86 ggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtt 163  Q
    ||||||||||| | ||||||||||||||| || ||||||||| |||||| |||||||||| | ||||||||||||||||    
T  22520810 ggaagcgtagggttagcaagcgctaaacctaggtagaaaagatcaagtttgcaagcgacaaatttgtgaaaatagggtt 22520888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 127 - 259
Target Start/End: Original strand, 24577581 - 24577708
Alignment:
Q  127 acaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgagaaaaactctccaaaaatattattgattaaataaaataagtt 226  Q
    ||||||| ||||  |||| || ||||||||| |||||||| ||||||| |||||||||| |||||||| | ||||||||||||| | |||||   ||| |    
T  24577581 acaagtttgcaaatgacaaacatgtgaaaatggggtttcgtaatccaccagaaattgag-aaaactct-ctaaaatattattgaatgaataa---aagct 24577675  T
Q  227 gcctcttaggttacaacaattaagtttaaatag 259  Q
    |||||||||| || |||  ||||||||||||||    
T  24577676 gcctcttaggctataactgttaagtttaaatag 24577708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 220
Target Start/End: Original strand, 2188355 - 2188487
Alignment:
Q  89 agcgtaggctagcaagcgctaaaccaagat-agaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgag-a 186  Q
    |||||||||||||| ||| |||||| | || | ||||||   |||| |||||||||| | |||| |||||||||||  | ||||||| ||||||| || |    
T  2188355 agcgtaggctagcatgcgttaaacctatattaaaaaagatttagtttgcaagcgacaaaattgtaaaaatagggttctgaaatccaccagaaattaagaa 2188454  T
Q  187 aaaactctccaaaaatattattgattaaataaaa 220  Q
    |||||||| | ||||||||||||||| |||||||    
T  2188455 aaaactct-ctaaaatattattgattgaataaaa 2188487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 23573640 - 23573583
Alignment:
Q  106 gctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtt 163  Q
    |||||| | |||||||||| ||||||||  ||||||||| ||||||||||||||||||    
T  23573640 gctaaagctagatagaaaataacaagtttacaagcgacaaacttgtgaaaatagggtt 23573583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 189
Target Start/End: Complemental strand, 2689196 - 2689121
Alignment:
Q  114 aagatagaaaagaa-caagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgagaaaa 189  Q
    ||||| |||||||| |||||| |||||||||| |  ||||||||||||||| ||| |||||| ||||||||||||||    
T  2689196 aagattgaaaagaaacaagtttgcaagcgacaaaactgtgaaaatagggttccggcatccac-agaaattgagaaaa 2689121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 2609547 - 2609605
Alignment:
Q  126 aacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattga 184  Q
    |||||||| ||||| |||| |||||||||||||||||| | |||| ||| |||||||||    
T  2609547 aacaagtttgcaagtgacaaacttgtgaaaatagggttacagaattcaccagaaattga 2609605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 81 - 278
Target Start/End: Original strand, 2472695 - 2472896
Alignment:
Q  81 agtacggaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaa 180  Q
    |||||| |||||||||||||||||||||||||| | || ||||   ||||||| |||| ||||| |||||||||||||||||| |||||||||| |||||    
T  2472695 agtacgaaagcgtaggctagcaagcgctaaacctaaattgaaagagacaagtttgcaaccgacaaacttgtgaaaatagggttccggaatccaccagaaa 2472794  T
Q  181 ttgagaaaaactctccaaaaatattattgattaaataaa----ataagttg-cctcttaggttacaacaattaagtttaaatagggaagtaacaaaccct 275  Q
    |||||||||||||  | ||||||||||||||| ||||||    |||||||| ||||||| | ||||||  ||||  ||||||| |||| |||||||| ||    
T  2472795 ttgagaaaaactc-actaaaatattattgattgaataaaagttataagttgtcctcttatgctacaaccgttaaacttaaatacggaaataacaaactct 2472893  T
Q  276 aat 278  Q
    |||    
T  2472894 aat 2472896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 46 - 163
Target Start/End: Original strand, 43306643 - 43306761
Alignment:
Q  46 gaacaggagaaaccttctctgatatcaattaacgtagtacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgaca 144  Q
    ||||||||||||||| |||||||| ||| | ||| |||||||||||||||| | ||||||||||||||| ||||||||||||||||||| |||||| |||    
T  43306643 gaacaggagaaacctgctctgataccaactgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcaaca 43306742  T
Q  145 cacttgtgaaaatagggtt 163  Q
     ||||||||||||||||||    
T  43306743 aacttgtgaaaatagggtt 43306761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 163
Target Start/End: Original strand, 43303966 - 43304049
Alignment:
Q  81 agtacggaagcgta-ggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtt 163  Q
    |||||||||||||| || |||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  43303966 agtacggaagcgtaaggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 43304049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 278
Target Start/End: Original strand, 365601 - 365791
Alignment:
Q  83 tacggaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactag-aaat 181  Q
    ||||||||||||||||||||| ||||||||| | | |||||| ||||| ||| ||||||||| ||||||||||||||||||   |||||||| || ||||    
T  365601 tacggaagcgtaggctagcaaacgctaaacctaaaaagaaaataacaaattcccaagcgacaaacttgtgaaaatagggttcttgaatccaccagaaaat 365700  T
Q  182 tgagaaaaactctccaaaaatattattgattaaataaaataagttgcctcttaggttacaacaattaagtttaaatagggaagtaacaaaccctaat 278  Q
     ||| |||| ||| || |||||||||||||| |||||   |||||  |||||||| ||||||  ||||| || |||| |||| ||||||||||||||    
T  365701 agag-aaaagtct-cagaaatattattgattgaataa---aagttatctcttaggctacaactgttaagctt-aatatggaaataacaaaccctaat 365791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 81 - 163
Target Start/End: Complemental strand, 5128992 - 5128909
Alignment:
Q  81 agtacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtt 163  Q
    ||||| |||||||||| | |||| |||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  5128992 agtacagaagcgtagggttagcaggcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 5128909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 46 - 163
Target Start/End: Original strand, 3068846 - 3068964
Alignment:
Q  46 gaacaggagaaaccttctctgatatcaattaacgtagtacggaagcgta-ggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgaca 144  Q
    ||||||||||||| | |||| ||| ||| | ||| |||||||||||||| || |||||||||||||||| ||||||||||||||||||| |||||  | |    
T  3068846 gaacaggagaaacatgctctaataccaactgacgcagtacggaagcgtatggttagcaagcgctaaacctagatagaaaagaacaagtttgcaaggaaaa 3068945  T
Q  145 cacttgtgaaaatagggtt 163  Q
     |||||| |||||||||||    
T  3068946 aacttgtaaaaatagggtt 3068964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 80 - 271
Target Start/End: Original strand, 8536374 - 8536565
Alignment:
Q  80 tagtacggaagcgtaggctagcaagcgctaaaccaagatagaaaagaa-----caagttcgcaagcgacacacttgtgaaaatagggtttcggaatccac 174  Q
    ||||||||||| ||||||||||||| |||||||| |||||||||| ||     |||| | ||||| |||| |||| |||||||||| || ||||||||||    
T  8536374 tagtacggaagtgtaggctagcaagtgctaaacctagatagaaaaaaaaaaatcaaggttgcaagggacagacttttgaaaataggattccggaatccac 8536473  T
Q  175 tagaaattgagaaaaactctccaaaaatattattgattaaataaaataagttgcctcttaggttacaacaattaagtttaaatagggaagtaacaaa 271  Q
     ||||||||||  ||||||| | ||||||||||  | | |||||   ||||||||||||||| ||||||  | ||| |||||||||||| |||||||    
T  8536474 cagaaattgag-gaaactct-ctaaaatattatctaatgaataa---aagttgcctcttaggctacaactgtcaagcttaaatagggaaataacaaa 8536565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 81 - 163
Target Start/End: Original strand, 3063743 - 3063826
Alignment:
Q  81 agtacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtt 163  Q
    |||||| ||||||||| | |||||||| |||||| |||||||||||||  |||| |||||||||| ||||||||||||||||||    
T  3063743 agtacgaaagcgtagggttagcaagcgttaaacctagatagaaaagaaagagtttgcaagcgacaaacttgtgaaaatagggtt 3063826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 45168343 - 45168463
Alignment:
Q  98 tagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaa---atagggtttcggaatccactagaaattgagaaaaactct 194  Q
    ||||||| |||||||| |||| ||||  |||||||| |||||||||| ||||||||||   |||||||| | |||||||| ||||||||||| ||| |||    
T  45168343 tagcaagtgctaaacctagattgaaataaacaagtttgcaagcgacaaacttgtgaaaaatatagggttccagaatccacaagaaattgagagaaaatct 45168442  T
Q  195 ccaaaaatattattgattaaa 215  Q
    | || ||| ||||||| ||||    
T  45168443 cgaataattttattgaataaa 45168463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 163
Target Start/End: Complemental strand, 52708923 - 52708844
Alignment:
Q  85 cggaagcgtaggctagcaagcgctaaaccaagatag-aaaagaacaagttcgcaagcgacacacttgtgaaaatagggtt 163  Q
    |||||||||||| || ||||||||||||| |||||| |||||||||| || |||||||| | |||||||||| |||||||    
T  52708923 cggaagcgtaggttaacaagcgctaaacctagatagaaaaagaacaaatttgcaagcgataaacttgtgaaagtagggtt 52708844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 220
Target Start/End: Complemental strand, 41152577 - 41152494
Alignment:
Q  136 caagcgacacacttgtgaaaatagggtttcggaatccactagaaattgagaaaaactctccaaaaatattattgattaaataaaa 220  Q
    ||||||||| | |||||||||||| ||||| |||||||| | |||||||| ||||||||  ||||||||||| || | |||||||    
T  41152577 caagcgacaaatttgtgaaaatagtgtttcagaatccacaaaaaattgag-aaaactctttaaaaatattatcgaatgaataaaa 41152494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 163
Target Start/End: Complemental strand, 33175914 - 33175835
Alignment:
Q  85 cggaagcgtaggctagcaagcgctaaaccaagatagaaaaga-acaagttcgcaagcgacacacttgtgaaaatagggtt 163  Q
    ||||||||||||||||||| || |||||| | || ||||||| ||||||| ||||  |||| |||| |||||||||||||    
T  33175914 cggaagcgtaggctagcaaacgataaacctatattgaaaagagacaagtttgcaaaggacaaacttatgaaaatagggtt 33175835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 35908496 - 35908572
Alignment:
Q  85 cggaagcgtaggctagcaagcgctaaaccaagatagaaaagaac-aagttcgcaagcgacacacttgtgaaaataggg 161  Q
    ||||||| |||| |||||||||||||||| |||||| ||||||| || || |||| ||||| |||||| |||||||||    
T  35908496 cggaagcataggttagcaagcgctaaacctagatag-aaagaacaaaatttgcaaacgacaaacttgtaaaaataggg 35908572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 85 - 210
Target Start/End: Complemental strand, 22440936 - 22440812
Alignment:
Q  85 cggaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattga 184  Q
    |||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||| |||| ||| ||||||||| | |||||||||||||||| |    
T  22440936 cggaagcgtaggctagcaagtgctaaacctagatagaaaagaacatgttcgcaagcgacaaacttatgataatagggttccagaatccactagaaattaa 22440837  T
Q  185 gaaaaactctccaaaaatattattga 210  Q
    ||||| || | | |||||||||||||    
T  22440836 gaaaacctat-ctaaaatattattga 22440812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 47 - 163
Target Start/End: Original strand, 21848937 - 21849054
Alignment:
Q  47 aacaggagaaaccttctctgatatcaattaacgtagtacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacac 145  Q
    |||||||||||||| |||||||| |||   ||| |||||||||||||||| | ||||||||| ||||| ||||||||||||||||||| ||||||||||     
T  21848937 aacaggagaaacctgctctgataccaaccgacgcagtacggaagcgtagggttagcaagcgccaaacctagatagaaaagaacaagtttgcaagcgacaa 21849036  T
Q  146 acttgtgaaaatagggtt 163  Q
    ||||||||||||||||||    
T  21849037 acttgtgaaaatagggtt 21849054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 93 - 195
Target Start/End: Complemental strand, 492638 - 492535
Alignment:
Q  93 taggctagcaagcgctaaaccaagatagaaaagaa-caagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgagaaaaac 191  Q
    |||||||||||||||||||   |||| |||||||| |||||| |||||||||| ||||||||| |||||||||||||||| || ||||||| ||||||||    
T  492638 taggctagcaagcgctaaatttagattgaaaagaaacaagtttgcaagcgacaaacttgtgaagatagggtttcggaatcaaccagaaattaagaaaaac 492539  T
Q  192 tctc 195  Q
    ||||    
T  492538 tctc 492535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 189
Target Start/End: Complemental strand, 18252495 - 18252390
Alignment:
Q  85 cggaagcgtaggctagcaagcgctaaaccaagatagaaa-agaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattg 183  Q
    |||||| |||||||  |||||| |||||| ||||||||| |||||||||| |||||||||| || |||||||||||||||    ||||||||||||||||    
T  18252495 cggaagtgtaggcttacaagcgttaaacctagatagaaatagaacaagtttgcaagcgacaaacctgtgaaaatagggttctataatccactagaaattg 18252396  T
Q  184 agaaaa 189  Q
    ||||||    
T  18252395 agaaaa 18252390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 210
Target Start/End: Original strand, 19497275 - 19497439
Alignment:
Q  46 gaacaggagaaaccttctctgatatcaattaacgtagtacggaagcgtaggctagcaagcgctaaaccaagatagaaaa-gaacaagttcgcaagcgaca 144  Q
    ||||||||||||||| |||||||||||| | |||  |||||||||    |  ||||||||||||||   ||| | |||| ||||||||| ||||||||||    
T  19497275 gaacaggagaaacctgctctgatatcaactgacgcggtacggaagtaaggattagcaagcgctaaatgtagaaaaaaaaagaacaagtttgcaagcgaca 19497374  T
Q  145 cacttgtgaaaatagggtttcggaatccactagaaattgagaaaaactctccaaaaatattattga 210  Q
     |||||||||||||||||| || ||||||  | ||||||||||||| ||| | |||||||||||||    
T  19497375 aacttgtgaaaatagggttccgaaatccatcaaaaattgagaaaaaatct-ctaaaatattattga 19497439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 163
Target Start/End: Original strand, 40778792 - 40778875
Alignment:
Q  81 agtacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtt 163  Q
    |||||||||||| ||| | | ||||||||||||| ||||||||||||||||||| |||||||||| |||||| |||||||||||    
T  40778792 agtacggaagcgcagggttaacaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtaaaaatagggtt 40778875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 85 - 174
Target Start/End: Original strand, 8456389 - 8456479
Alignment:
Q  85 cggaagcgtaggctagcaagcgctaaaccaagatagaaaag-aacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccac 174  Q
    |||||||||||| |||||||||||||||| |||| |||||| ||||||||||||||||||  |||||| |||||||| || || |||||||    
T  8456389 cggaagcgtagggtagcaagcgctaaacctagattgaaaagaaacaagttcgcaagcgacgaacttgtaaaaataggattccgaaatccac 8456479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 85 - 212
Target Start/End: Complemental strand, 26140422 - 26140296
Alignment:
Q  85 cggaagcgtaggctagcaagcgctaaaccaagatagaaa-agaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattg 183  Q
    ||||||| |||| |||||| ||||||| | |||| |||| | |||||| | |||||||||| |||| |||||||||||||   |||||||| | ||||||    
T  26140422 cggaagcataggttagcaaacgctaaatctagattgaaagaaaacaagattgcaagcgacaaacttatgaaaatagggttcaagaatccaccaaaaattg 26140323  T
Q  184 agaaaaactctccaaaaatattattgatt 212  Q
    || |||||||| | |||||||||||||||    
T  26140322 ag-aaaactct-ctaaaatattattgatt 26140296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 83 - 220
Target Start/End: Complemental strand, 40206229 - 40206093
Alignment:
Q  83 tacggaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaatt 182  Q
    ||||||||||||||||||||||||||||| | | || ||||   |||||||||||||||||| |||||||||||||| |||||||||| ||| |||||||    
T  40206229 tacggaagcgtaggctagcaagcgctaaatctaaattgaaagagacaagttcgcaagcgacaaacttgtgaaaatagtgtttcggaattcaccagaaatt 40206130  T
Q  183 gagaaaaactctccaaaaatattattgattaaataaaa 220  Q
    |||||||| ||| | ||||||||||||| | |||||||    
T  40206129 gagaaaaattct-ctaaaatattattgaatgaataaaa 40206093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 85 - 271
Target Start/End: Original strand, 13991389 - 13991571
Alignment:
Q  85 cggaagcgtaggctagcaagcgctaaaccaagatagaaaag-aacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattg 183  Q
    ||||||||||||||||||||||||||| | |||| |||||| |||||||| |||||||||| || || ||||||| ||||  ||||||||| |||| |||    
T  13991389 cggaagcgtaggctagcaagcgctaaatctagattgaaaagaaacaagtttgcaagcgacaaacatgcgaaaataaggttctggaatccaccagaatttg 13991488  T
Q  184 agaaaaactctccaaaaatattattgattaaataaaataagttgcctcttaggttacaacaattaagtttaaatagggaagtaacaaa 271  Q
    || |||||||| | ||||||||||||| | |||||   ||||| ||||||||| |||||| ||||| | ||||||||||| |||||||    
T  13991489 ag-aaaactct-ctaaaatattattgaatgaataa---aagttccctcttaggctacaaccattaaatataaatagggaaataacaaa 13991571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 81 - 180
Target Start/End: Complemental strand, 24667739 - 24667640
Alignment:
Q  81 agtacggaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaa 180  Q
    |||| ||||||||||||||||||||| |||||| ||||||||||||| ||| ||||| || ||| |||||||||||||||||| ||||||||||||||||    
T  24667739 agtatggaagcgtaggctagcaagcgttaaacctagatagaaaagaagaagctcgcaggcaacaaacttgtgaaaatagggttccggaatccactagaaa 24667640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 81 - 163
Target Start/End: Original strand, 6659337 - 6659419
Alignment:
Q  81 agtacggaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtt 163  Q
    |||||||||| ||||| |||||||||||||| | ||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  6659337 agtacggaagtgtaggttagcaagcgctaaatctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 6659419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 72 - 263
Target Start/End: Complemental strand, 19935578 - 19935384
Alignment:
Q  72 aattaacgtagtacggaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatc 171  Q
    |||| ||| ||||| ||||||||||||||| ||||||||||  |||||||||| || || || |||||||||| |||| |||||||||||||  |||||     
T  19935578 aattgacgcagtacagaagcgtaggctagccagcgctaaactcagatagaaaaaaataaatttgcaagcgacaaacttatgaaaatagggttatggaatt 19935479  T
Q  172 cactagaaattgagaaaaactctccaaaaatattattgattaaataaa----ataagttgcctcttaggttacaacaattaagtttaaatagggaa 263  Q
    ||  | ||||||||||||| ||| | ||||||  ||||||| ||||||    |||||||| ||||| |||||||||  ||||  ||||||||||||    
T  19935478 catcaaaaattgagaaaaattct-ctaaaataacattgattgaataaaagttataagttgtctctttggttacaactgttaaacttaaatagggaa 19935384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 91 - 189
Target Start/End: Original strand, 22486792 - 22486889
Alignment:
Q  91 cgtaggctagcaagcgctaaaccaagatag-aaaagaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgagaaaa 189  Q
    ||||||||||||||||||||||| | |||| |||||| |||||| |||||||||| ||||||||||||| |||| |||||||||| ||||||||||||||    
T  22486792 cgtaggctagcaagcgctaaacctatatagaaaaagaccaagtttgcaagcgaca-acttgtgaaaata-ggttccggaatccaccagaaattgagaaaa 22486889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 81 - 163
Target Start/End: Original strand, 7723670 - 7723751
Alignment:
Q  81 agtacggaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtt 163  Q
    ||||| |||||||||||||||||||||||||| | ||| |||||||||||||| |||||| ||| ||||||||||||||||||    
T  7723670 agtacagaagcgtaggctagcaagcgctaaacta-gattgaaaagaacaagtttgcaagctacaaacttgtgaaaatagggtt 7723751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 258
Target Start/End: Complemental strand, 7634197 - 7633990
Alignment:
Q  46 gaacaggagaaaccttctctgatatcaattaacgtagtacggaagcgtaggctagcaagcgctaaaccaagatagaaaag-aacaagttcgcaagcgaca 144  Q
    ||||| ||||||||| ||||| || ||| | ||| ||| | |||||||| ||||| ||||| |||||| |||| |||||| |||||||| |||| ||| |    
T  7634197 gaacaagagaaacctactctgttaccaactgacgcagt-cagaagcgtatgctagtaagcgttaaacctagattgaaaaggaacaagtttgcaaacgata 7634099  T
Q  145 cacttgtgaaaatagggtttcggaatccactagaaattgagaaaaactctccaaaaatattattgattaaataaaataagttgcctcttaggttacaaca 244  Q
     ||||||| |||||| |||  ||||||||| |||||||||| |||||||| | ||||||||||||| | |||||   ||||| ||||||| ||||||||     
T  7634098 aacttgtggaaatagagttctggaatccaccagaaattgag-aaaactct-ctaaaatattattgaatgaataa---aagtttcctcttatgttacaact 7634004  T
Q  245 attaagtttaaata 258  Q
     ||||| |||||||    
T  7634003 gttaagcttaaata 7633990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 38888042 - 38888105
Alignment:
Q  126 aacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgagaaaa 189  Q
    ||||| || |||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  38888042 aacaaatttgcaagcgacaaacttgtgaaaatagggtttcggaatccattagaaattgagaaaa 38888105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 85 - 189
Target Start/End: Original strand, 17254893 - 17254998
Alignment:
Q  85 cggaagcgtaggctagcaagcgctaaaccaagatagaaaa-gaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattg 183  Q
    ||||||||||||||||||| ||||||||  |||| ||| | |||||| ||  ||||||||| |||||||||||||| |||  | ||||| ||||||||||    
T  17254893 cggaagcgtaggctagcaaacgctaaacttagattgaagatgaacaaattttcaagcgacaaacttgtgaaaatagagttctgaaatcccctagaaattg 17254992  T
Q  184 agaaaa 189  Q
    ||||||    
T  17254993 agaaaa 17254998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 81 - 189
Target Start/End: Original strand, 21433569 - 21433678
Alignment:
Q  81 agtacggaagcgtaggctagcaagcgctaaaccaagatagaaaa-gaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaa 179  Q
    |||||||||||||||  ||||  | |||||||| |||||||||| |||||| ||||||||||||| |||| ||||||||||||| | |||| ||  | ||    
T  21433569 agtacggaagcgtagtatagctggtgctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggttccagaattcatcataa 21433668  T
Q  180 attgagaaaa 189  Q
    ||||||||||    
T  21433669 attgagaaaa 21433678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 189
Target Start/End: Original strand, 7724083 - 7724189
Alignment:
Q  81 agtacggaagcgtaggctagcaagcgctaaaccaagatagaaaagaa-caagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaa 179  Q
    ||||| ||| |||| ||||||||| |||||||| | || |||||||| |||||| || ||||||| |||   |||||||||||| |||||||||| ||||    
T  7724083 agtacagaaacgtatgctagcaagtgctaaacctatattgaaaagaagcaagtttgcgagcgacaaact---gaaaatagggttccggaatccaccagaa 7724179  T
Q  180 attgagaaaa 189  Q
    ||||||||||    
T  7724180 attgagaaaa 7724189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 189
Target Start/End: Complemental strand, 9260610 - 9260547
Alignment:
Q  126 aacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgagaaaa 189  Q
    |||||||| |||| ||||| ||||| |||||||||||||| |||||||| ||||||||||||||    
T  9260610 aacaagtttgcaaacgacaaacttgcgaaaatagggtttcagaatccaccagaaattgagaaaa 9260547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 189
Target Start/End: Original strand, 18689549 - 18689636
Alignment:
Q  103 agcgctaaaccaagatagaaaagaacaa-gttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgagaaaa 189  Q
    ||||||||||| |||| |||||||| || ||| ||| |||||| |||||| ||||||||||| | |||||||| ||||||||||||||    
T  18689549 agcgctaaacctagattgaaaagaaaaaagtttgcatgcgacaaacttgtaaaaatagggttgcagaatccaccagaaattgagaaaa 18689636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 109 - 220
Target Start/End: Complemental strand, 10494958 - 10494848
Alignment:
Q  109 aaaccaagatagaaaagaa-caagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgagaaaaactctccaaaaatattat 207  Q
    ||||| |||| |||||||| |||||| ||||| |||| || ||||||||||| ||| |||||| ||| |||||||||| |||||||| | ||||||||||    
T  10494958 aaacctagatggaaaagaaacaagtttgcaagtgacaaacctgtgaaaatagagttccggaattcaccagaaattgag-aaaactct-ctaaaatattat 10494861  T
Q  208 tgattaaataaaa 220  Q
    ||| | |||||||    
T  10494860 tgaatgaataaaa 10494848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 189
Target Start/End: Original strand, 18657054 - 18657157
Alignment:
Q  87 gaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaa-gttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgag 185  Q
    |||||||| |||||  ||| ||||||| |||| |||||||| || ||| ||| |||||| |||||| |||||||| |||| ||||||||  |||||||||    
T  18657054 gaagcgtaagctagagagcactaaacctagattgaaaagaaaaaagtttgcatgcgacaaacttgtaaaaataggatttcagaatccaccggaaattgag 18657153  T
Q  186 aaaa 189  Q
    ||||    
T  18657154 aaaa 18657157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 204
Target Start/End: Original strand, 53477235 - 53477343
Alignment:
Q  98 tagcaagcgctaaaccaagataga---aaagaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgagaaaaactct 194  Q
    |||||| ||||||||| |||||||   ||| ||||||||  |||||| || || ||||||||| ||||||  |||||||| |||||||||| ||||||||    
T  53477235 tagcaaacgctaaacctagatagagtaaaaaaacaagtttacaagcgtcaaacctgtgaaaatggggttttagaatccaccagaaattgag-aaaactct 53477333  T
Q  195 ccaaaaatat 204  Q
    | ||||||||    
T  53477334 ctaaaaatat 53477343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 163
Target Start/End: Original strand, 54700572 - 54700686
Alignment:
Q  49 caggagaaaccttctctgatatcaattaacgtagtacggaagcgtaggctagcaagcgctaaaccaagatagaaaag-aacaagttcgcaagcgacacac 147  Q
    |||||||||||| |||||||| ||| | ||| ||| ||  || |||||||||||| ||||||||| | || |||||| |||||||| ||||| |||| ||    
T  54700572 caggagaaacctgctctgataccaactgacgcagt-cgagagtgtaggctagcaaacgctaaacctatattgaaaagaaacaagtttgcaagtgacaaac 54700670  T
Q  148 ttgtgaaaatagggtt 163  Q
    |||||| |||||||||    
T  54700671 ttgtgagaatagggtt 54700686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 220
Target Start/End: Original strand, 13990729 - 13990821
Alignment:
Q  126 aacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgagaaaaactctccaaaaatattattgattaaataaaa 220  Q
    |||||||| |||||  ||| ||||||||||||||||||  ||||||||  ||||||||| ||||||||| | ||||||||||||| | |||||||    
T  13990729 aacaagtttgcaagtaacaaacttgtgaaaatagggttctggaatccatcagaaattga-aaaaactct-ctaaaatattattgaatgaataaaa 13990821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 279
Target Start/End: Original strand, 3765270 - 3765408
Alignment:
Q  137 aagcgacacacttgtgaaaatagggtttcggaatccactagaaattgagaaaaactctccaaaaatattattgattaaataaaataagttgcctcttagg 236  Q
    |||||||| |||||| ||| |||| ||| ||||| ||| | |||||||||||| ||||| |||||||||||||| |||||||||   |||| || ||| |    
T  3765270 aagcgacagacttgtaaaagtaggattttggaattcaccaaaaattgagaaaa-ctctc-aaaaatattattgaataaataaaa---gttggcttttatg 3765364  T
Q  237 ttacaacaattaagtttaaatagggaagtaac-aaaccctaata 279  Q
     |||||   ||||| |||||||||||| |||| |||||||||||    
T  3765365 ctacaattgttaagcttaaatagggaattaacaaaaccctaata 3765408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 157
Target Start/End: Original strand, 50515905 - 50515978
Alignment:
Q  85 cggaagcgtaggctagcaagcgctaaaccaagatagaaaagaa-caagttcgcaagcgacacacttgtgaaaat 157  Q
    |||||||| |||||||||||||||| ||  |||  || ||||| |||||| |||||||||| ||||||||||||    
T  50515905 cggaagcggaggctagcaagcgctacacttagactgagaagaaacaagtttgcaagcgacaaacttgtgaaaat 50515978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 189
Target Start/End: Original strand, 50519224 - 50519260
Alignment:
Q  153 aaaatagggtttcggaatccactagaaattgagaaaa 189  Q
    |||||||||||  ||||||||||||||||||||||||    
T  50519224 aaaatagggttctggaatccactagaaattgagaaaa 50519260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 87 - 189
Target Start/End: Complemental strand, 9780 - 9676
Alignment:
Q  87 gaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgac--acacttgtgaaaatagggtttcggaatccactagaaattga 184  Q
    |||||||| ||||||||||| |||||| |||| ||||||||||||||  ||||||||  |||||||||||||||||||| || ||||||| |||||||||    
T  9780 gaagcgtatgctagcaagcggtaaacctagattgaaaagaacaagtttccaagcgactaacacttgtgaaaatagggttccgaaatccaccagaaattga 9681  T
Q  185 gaaaa 189  Q
    |||||    
T  9680 gaaaa 9676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 96 - 271
Target Start/End: Complemental strand, 1725 - 1554
Alignment:
Q  96 gctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgagaaaaactctc 195  Q
    ||||||||||| |||||| |||| ||||  |||||||| |||| ||||| |||||| |||||| ||||  ||||||||| |||| |||||||||||| |     
T  1725 gctagcaagcgttaaacctagattgaaagaaacaagtttgcaaacgacaaacttgtcaaaatatggttctggaatccaccagaatttgagaaaaactat- 1627  T
Q  196 caaaaatattattgattaaataaaataagttgcctcttaggttacaacaattaagtttaaatagggaagtaacaaa 271  Q
    | ||||||||||| | | |||||   ||||| ||||||||||||||||  ||||| ||||||| |||| |||||||    
T  1626 ctaaaatattattcaatgaataa---aagtttcctcttaggttacaactgttaagcttaaataaggaaataacaaa 1554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 87 - 190
Target Start/End: Complemental strand, 14923 - 14820
Alignment:
Q  87 gaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgaga 186  Q
    |||||||||||||||||||||||||||  ||| ||||  || ||||| |||||||| | |||||||||||||||  | |||||||||| | ||||||| |    
T  14923 gaagcgtaggctagcaagcgctaaaccttgattgaaataaataagttggcaagcgaaaaacttgtgaaaataggaatccggaatccaccaaaaattgaaa 14824  T
Q  187 aaaa 190  Q
    ||||    
T  14823 aaaa 14820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 46 - 189
Target Start/End: Complemental strand, 16162 - 16021
Alignment:
Q  46 gaacaggagaaaccttctctgatatcaattaacgtagtacggaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacac 145  Q
    |||| |||||||||| |||||||| ||| | ||| ||| ||||| ||||||||| |||| |||||||| ||||||||||||||||||| ||||| ||||     
T  16162 gaactggagaaacctgctctgataccaactgacgcagt-cggaa-cgtaggctaacaagtgctaaacctagatagaaaagaacaagtttgcaagtgacaa 16065  T
Q  146 acttgtgaaaatagggtttcggaatccactagaaattgagaaaa 189  Q
    || | |||||||||  ||   |||||||| ||||||| ||||||    
T  16064 acatctgaaaatagtattatagaatccaccagaaatttagaaaa 16021  T

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Target: scaffold0330 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 271
Target Start/End: Complemental strand, 17707 - 17536
Alignment:
Q  96 gctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattgagaaaaactctc 195  Q
    ||||||||||| |||||| |||| ||||  |||||||| |||| ||||| |||||| |||||| ||||  |||||||||  ||| |||||||||||| |     
T  17707 gctagcaagcgttaaacctagattgaaagaaacaagtttgcaaacgacaaacttgtcaaaatatggttctggaatccacctgaatttgagaaaaactat- 17609  T
Q  196 caaaaatattattgattaaataaaataagttgcctcttaggttacaacaattaagtttaaatagggaagtaacaaa 271  Q
    | ||||||||||| | | ||||||||   || ||||||||||||||||  ||||| ||||||| |||| |||||||    
T  17608 ctaaaatattattcaatgaataaaat---tttcctcttaggttacaactgttaagcttaaataaggaaataacaaa 17536  T

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Target: scaffold0110 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 81 - 195
Target Start/End: Original strand, 46739 - 46855
Alignment:
Q  81 agtacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaa-tagggtttcggaatccactaga 178  Q
    |||||||||||||||| | ||||||||||||||| ||||||||||||||||||| |||||||||| || | | |||| || |||| |||||||||| | |    
T  46739 agtacggaagcgtagggtgagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacctatcaaaattaaggttccggaatccaccaaa 46838  T
Q  179 aattgagaaaaactctc 195  Q
    |||||||| ||| ||||    
T  46839 aattgagagaaaatctc 46855  T

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Target: scaffold0110; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 163
Target Start/End: Original strand, 45268 - 45351
Alignment:
Q  81 agtacggaagcgtaggct-agcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtt 163  Q
    |||||||||||||||| | |||||||||||||   |||||  |||||||||||| |||||||||| |||| |||||||| ||||    
T  45268 agtacggaagcgtagggttagcaagcgctaaaattagataagaaagaacaagtttgcaagcgacaaacttatgaaaataaggtt 45351  T

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Target: scaffold0054 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 160
Target Start/End: Complemental strand, 37786 - 37714
Alignment:
Q  88 aagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagg 160  Q
    ||||||| ||||| |||||||||||| |||| |||||||||||||| |||||||||| |||| ||||||||||    
T  37786 aagcgtaagctagaaagcgctaaacctagattgaaaagaacaagtttgcaagcgacaaacttatgaaaatagg 37714  T

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Target: scaffold0054; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 49398 - 49322
Alignment:
Q  87 gaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgacacacttgtgaaaatagggtt 163  Q
    |||||||| ||||| ||||| | |||| |||| || ||||||||||| |||||||||| |||| |||||||||||||    
T  49398 gaagcgtaagctagaaagcgttgaacctagattgagaagaacaagtttgcaagcgacaaacttatgaaaatagggtt 49322  T

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Target: scaffold0024 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 220
Target Start/End: Complemental strand, 145813 - 145678
Alignment:
Q  85 cggaagcgtaggctagcaagcgctaaaccaagatagaaaagaa-caagttcgcaagcgacacacttgtgaaaatagggtttcggaatccactagaaattg 183  Q
    |||||| ||| |||||||| ||||||||| |||| ||||| || |||||| ||||||||||  ||||| |||||||||||   |||||||| | ||||||    
T  145813 cggaagtgtaagctagcaatcgctaaacctagattgaaaaaaatcaagtttgcaagcgacaagcttgtaaaaatagggttctagaatccaccaaaaattg 145714  T
Q  184 agaaaaactctccaaaaatattattgattaaataaaa 220  Q
    ||||||| | | | ||||||||||||| | |||||||    
T  145713 agaaaaattat-ctaaaatattattgaatgaataaaa 145678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 158
Target Start/End: Original strand, 11559 - 11672
Alignment:
Q  46 gaacaggagaaacctt-ctctgatatcaattaacgtagtacggaagcgtaggctagcaagcgctaaaccaagatagaaaagaacaagttcgcaagcgaca 144  Q
    |||||||||||||| | |||||||| ||| | ||  | ||| |||||||||||||||||||  ||| || ||||  ||||||| ||||| ||||| ||||    
T  11559 gaacaggagaaaccatgctctgataccaactgacccaatacagaagcgtaggctagcaagcattaatcctagattaaaaagaaaaagtttgcaagtgaca 11658  T
Q  145 cacttgtgaaaata 158  Q
     |||||||||||||    
T  11659 aacttgtgaaaata 11672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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