View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_high_47 (Length: 330)
Name: NF0925_high_47
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_high_47 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 2933565 - 2933264
Alignment:
| Q |
1 |
aaataatgttttcttgcttagctaaacatgttttgaatgatttgtgagagtgtattccgttaattattgaatcagaaagactcatgtggctttctgaacc |
100 |
Q |
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| T |
2933565 |
aaataatgttttcttgcttagctaaacatgttttgaatgatttgtgagagtgtattccattaattattgaatcagaaagactcatgtggctttctgaacc |
2933466 |
T |
|
| Q |
101 |
atttttaaggaaaacatttgaagcaggatatggtacatatgtctagaagactagaaccagaagaacctaaatatgttgtcaactttttggtactatggaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2933465 |
atttttaaggaaaacatttgaagcaggatatggtacatatgtctagaagactagaaccagaagaacctatatatgttgtcaactttttggtactatggaa |
2933366 |
T |
|
| Q |
201 |
aaatatattgagttgtatttatttccattataagttggtgtgctttgtttaacgagttttgatgctatggatgtatttgattacatattagatgaagaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2933365 |
aaatatattgagttgtatttatttccattataagttggtgtgctttgtttaatgagttttgatgctatggatgtatttgattacatattagatgaagaat |
2933266 |
T |
|
| Q |
301 |
ct |
302 |
Q |
| |
|
|| |
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|
| T |
2933265 |
ct |
2933264 |
T |
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