View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_high_51 (Length: 325)
Name: NF0925_high_51
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_high_51 |
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| [»] scaffold0057 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 59 - 315
Target Start/End: Original strand, 13731419 - 13731675
Alignment:
| Q |
59 |
catcaccttccaccacatcatctgaatctcccacacccatcactcctccacctaaacctcacagaattcatcctcttaacactcattccatggccactag |
158 |
Q |
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| T |
13731419 |
catcaccttccaccacatcatctgaatctcccacacccatcactcctccacctaaacctcacagaattcatcctcttaacactcattccatggccactag |
13731518 |
T |
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| Q |
159 |
agggaaacttggggttgttcagcctagaaaacaacctacacttcttcttactcatcttgaacccaccagtcacaaacaagctttattgaatcctaattgg |
258 |
Q |
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| T |
13731519 |
agggaaacttggggttgttcagcctagaaaacaacctacacttcttcttactcatcttgaacccaccagtcacaaacaagctttattgaatcctaattgg |
13731618 |
T |
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| Q |
259 |
catcttgctatgaaaactgagttcaatgccttgttacacaacaacacttggtctctg |
315 |
Q |
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| T |
13731619 |
catcttgctatgaaaactgagttcaatgccttgttacacaacaacacttggtctctg |
13731675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 60 - 315
Target Start/End: Complemental strand, 25229256 - 25229001
Alignment:
| Q |
60 |
atcaccttccaccacatcatctgaatctcccacacccatcactcctccacctaaacctcacagaattcatcctcttaacactcattccatggccactaga |
159 |
Q |
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| T |
25229256 |
atcaccttccaccacatcatctgaatctctcacacccatcactcctccacctaaacctcacagaattaatcctcttaatactcattccatggccactaga |
25229157 |
T |
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| Q |
160 |
gggaaacttggggttgttcagcctagaaaacaacctacacttcttcttactcatcttgaacccaccagtcacaaacaagctttattgaatcctaattggc |
259 |
Q |
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| T |
25229156 |
gggaaacttggggttgttcagcctagaaaacaacctacacttcttcttactcatcttgaacccaccagtcacaaacaagctttattgaatcctaattggc |
25229057 |
T |
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| Q |
260 |
atcttgctatgaaaactgagttcaatgccttgttacacaacaacacttggtctctg |
315 |
Q |
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| T |
25229056 |
atcttgctatgaaaactgagttcaatgccttgttacacaacaacacttggtctctg |
25229001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 250 - 315
Target Start/End: Complemental strand, 25238898 - 25238833
Alignment:
| Q |
250 |
cctaattggcatcttgctatgaaaactgagttcaatgccttgttacacaacaacacttggtctctg |
315 |
Q |
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| T |
25238898 |
cctaattggcatcttgctatgaaaactgagttcaatgccttgttacacaacaacacttggtctctg |
25238833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 7353198 - 7353251
Alignment:
| Q |
5 |
aattatgtgtttaattattacctatgtgtttagcctaatgatgatattcttgga |
58 |
Q |
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| T |
7353198 |
aattatgtgtttaattattacctatgtgtttagcctaatgatgatattgttgga |
7353251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 315
Target Start/End: Complemental strand, 55180 - 54955
Alignment:
| Q |
91 |
acacccatcactcctccacctaaacctcacagaattcatcctctt-aacactcattccatggccactagagggaaacttggggttgttcagcctagaaaa |
189 |
Q |
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| T |
55180 |
acacctatcaccccaccacccaaaccacacagaatttatccccctcaacactcattacatggctactagaggaaagcttggcattgttcagcctagaccg |
55081 |
T |
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| Q |
190 |
caacctacacttcttcttactcatcttgaacccaccagtcacaaacaagctttattgaatcctaattggcatcttgctatgaaaactgagttcaatgcct |
289 |
Q |
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| T |
55080 |
aaccctactcttctttttactcgccttgaacctactagtcataaacaagccttattggaccacaactggcatcttgctacgcaaactgagtaaaatgcat |
54981 |
T |
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| Q |
290 |
tgttacacaacaacacttggtctctg |
315 |
Q |
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| T |
54980 |
tgttaaataataatacatggtctctg |
54955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 240
Target Start/End: Original strand, 35293065 - 35293157
Alignment:
| Q |
148 |
atggccactagagggaaacttggggttgttcagcctagaaaacaacctacacttcttcttactcatcttgaacccaccagtcacaaacaagct |
240 |
Q |
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| T |
35293065 |
atggccactagaggcaaacgtggaattgttcaacagagaattcaacctacactacttctaactcatcttgagcctacaagttacaagcaagct |
35293157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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