View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0925_high_67 (Length: 279)

Name: NF0925_high_67
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0925_high_67
NF0925_high_67
[»] chr7 (31 HSPs)
chr7 (37-251)||(2307960-2308175)
chr7 (38-213)||(23032697-23032869)
chr7 (37-209)||(40848873-40849042)
chr7 (37-110)||(48642802-48642875)
chr7 (37-113)||(47646704-47646780)
chr7 (136-213)||(26214999-26215076)
chr7 (135-199)||(27215101-27215165)
chr7 (133-196)||(6880010-6880073)
chr7 (37-110)||(32942066-32942139)
chr7 (37-113)||(8568538-8568614)
chr7 (133-213)||(26524833-26524913)
chr7 (33-113)||(30079576-30079656)
chr7 (134-197)||(47483728-47483791)
chr7 (135-204)||(29211546-29211615)
chr7 (144-196)||(1739919-1739971)
chr7 (136-196)||(20306715-20306775)
chr7 (37-113)||(29211633-29211709)
chr7 (144-196)||(31287679-31287731)
chr7 (37-113)||(46147238-46147309)
chr7 (133-204)||(524773-524844)
chr7 (133-196)||(30079498-30079561)
chr7 (133-196)||(43202541-43202604)
chr7 (37-75)||(8118302-8118340)
chr7 (147-197)||(27456471-27456521)
chr7 (138-196)||(37375438-37375496)
chr7 (12-45)||(2308177-2308210)
chr7 (144-197)||(10338720-10338773)
chr7 (133-178)||(29628212-29628257)
chr7 (135-196)||(31012969-31013029)
chr7 (39-75)||(7685940-7685976)
chr7 (37-113)||(7697306-7697382)
[»] chr3 (17 HSPs)
chr3 (37-113)||(10481629-10481705)
chr3 (37-113)||(2832378-2832454)
chr3 (37-113)||(20846494-20846569)
chr3 (39-113)||(26291940-26292014)
chr3 (131-196)||(25465909-25465974)
chr3 (37-113)||(26758246-26758322)
chr3 (131-204)||(52632141-52632214)
chr3 (133-197)||(2832298-2832362)
chr3 (37-113)||(4554708-4554784)
chr3 (37-113)||(17144714-17144790)
chr3 (37-109)||(54122043-54122115)
chr3 (37-109)||(55467635-55467702)
chr3 (133-196)||(8557863-8557926)
chr3 (37-116)||(42363207-42363285)
chr3 (144-196)||(4554811-4554863)
chr3 (49-113)||(8557942-8558006)
chr3 (144-196)||(54122437-54122489)
[»] chr5 (23 HSPs)
chr5 (37-213)||(27571933-27572105)
chr5 (133-213)||(2589082-2589162)
chr5 (133-213)||(18845623-18845703)
chr5 (37-109)||(41454886-41454958)
chr5 (42-113)||(34969352-34969423)
chr5 (39-113)||(22747557-22747631)
chr5 (37-113)||(6633342-6633413)
chr5 (133-209)||(18432195-18432271)
chr5 (39-113)||(20191968-20192037)
chr5 (144-196)||(691467-691519)
chr5 (144-196)||(6595103-6595155)
chr5 (144-208)||(6633440-6633504)
chr5 (132-196)||(6718697-6718761)
chr5 (132-196)||(11402703-11402767)
chr5 (144-196)||(25495207-25495259)
chr5 (133-197)||(26007281-26007345)
chr5 (144-196)||(41454990-41455042)
chr5 (133-204)||(34111677-34111748)
chr5 (133-207)||(23411797-23411871)
chr5 (39-116)||(26007358-26007435)
chr5 (133-197)||(7591469-7591532)
chr5 (44-108)||(25495114-25495178)
chr5 (144-196)||(33792789-33792841)
[»] chr6 (21 HSPs)
chr6 (133-204)||(892237-892308)
chr6 (133-196)||(4562966-4563029)
chr6 (37-113)||(19135096-19135172)
chr6 (133-213)||(14564543-14564623)
chr6 (133-204)||(19135009-19135080)
chr6 (38-113)||(28632958-28633033)
chr6 (40-113)||(7170081-7170154)
chr6 (133-194)||(29048230-29048291)
chr6 (37-113)||(22413860-22413936)
chr6 (133-223)||(13859268-13859357)
chr6 (144-204)||(7169988-7170048)
chr6 (132-196)||(7676260-7676324)
chr6 (133-213)||(28633049-28633128)
chr6 (142-197)||(4577206-4577261)
chr6 (137-192)||(8064604-8064659)
chr6 (133-196)||(30752646-30752709)
chr6 (135-209)||(17306470-17306543)
chr6 (37-99)||(30752553-30752614)
chr6 (14-67)||(31945459-31945513)
chr6 (37-69)||(4562879-4562911)
chr6 (144-196)||(31945340-31945392)
[»] scaffold0664 (1 HSPs)
scaffold0664 (49-193)||(6030-6171)
[»] chr8 (20 HSPs)
chr8 (39-116)||(4785260-4785337)
chr8 (37-113)||(6591250-6591326)
chr8 (133-213)||(3129457-3129537)
chr8 (37-113)||(33565979-33566055)
chr8 (37-113)||(40436459-40436530)
chr8 (142-205)||(4785355-4785418)
chr8 (133-192)||(6617037-6617096)
chr8 (37-75)||(22811195-22811233)
chr8 (133-210)||(12074084-12074161)
chr8 (36-113)||(30254110-30254187)
chr8 (37-113)||(6616945-6617021)
chr8 (133-192)||(6591342-6591401)
chr8 (37-108)||(6649542-6649613)
chr8 (37-100)||(11218972-11219035)
chr8 (138-209)||(12912604-12912675)
chr8 (37-75)||(7428455-7428493)
chr8 (37-113)||(31497583-31497659)
chr8 (144-196)||(37162562-37162614)
chr8 (144-196)||(38926340-38926392)
chr8 (37-109)||(44336795-44336866)
[»] scaffold0204 (2 HSPs)
scaffold0204 (133-197)||(25973-26037)
scaffold0204 (133-196)||(14631-14694)
[»] chr4 (29 HSPs)
chr4 (37-191)||(11031546-11031700)
chr4 (133-197)||(48338451-48338515)
chr4 (37-108)||(29335108-29335179)
chr4 (37-113)||(20986444-20986520)
chr4 (133-213)||(48293303-48293383)
chr4 (144-223)||(17845008-17845087)
chr4 (133-196)||(49640951-49641014)
chr4 (166-223)||(18881927-18881984)
chr4 (133-190)||(32223231-32223288)
chr4 (44-112)||(8484695-8484763)
chr4 (39-91)||(19753527-19753579)
chr4 (39-91)||(19786227-19786279)
chr4 (37-113)||(21069068-21069144)
chr4 (133-189)||(26674224-26674280)
chr4 (133-193)||(51907177-51907237)
chr4 (133-196)||(5122292-5122355)
chr4 (133-196)||(6101993-6102056)
chr4 (137-196)||(8312002-8312061)
chr4 (38-113)||(15723905-15723980)
chr4 (132-194)||(18319477-18319540)
chr4 (132-194)||(18399141-18399204)
chr4 (38-113)||(23625885-23625960)
chr4 (15-109)||(42198784-42198873)
chr4 (143-196)||(21069171-21069224)
chr4 (144-208)||(45983500-45983565)
chr4 (135-196)||(48602434-48602495)
chr4 (136-189)||(48684892-48684945)
chr4 (144-196)||(23120161-23120213)
chr4 (144-196)||(42198904-42198956)
[»] chr2 (16 HSPs)
chr2 (137-197)||(28790620-28790680)
chr2 (37-113)||(30759632-30759708)
chr2 (133-213)||(1331115-1331194)
chr2 (37-113)||(5862615-5862691)
chr2 (133-213)||(17762852-17762933)
chr2 (135-196)||(31719988-31720049)
chr2 (133-197)||(6946459-6946523)
chr2 (37-113)||(13193921-13193992)
chr2 (133-196)||(27301394-27301457)
chr2 (139-209)||(12041492-12041562)
chr2 (144-197)||(30761661-30761714)
chr2 (37-113)||(41461104-41461175)
chr2 (12-110)||(12841537-12841636)
chr2 (37-100)||(27301486-27301544)
chr2 (26-68)||(12884537-12884579)
chr2 (81-113)||(44085546-44085578)
[»] chr1 (28 HSPs)
chr1 (37-100)||(23475109-23475172)
chr1 (131-213)||(47984393-47984475)
chr1 (37-114)||(8165534-8165611)
chr1 (133-213)||(8268751-8268831)
chr1 (133-213)||(10847424-10847504)
chr1 (37-113)||(11074383-11074459)
chr1 (133-196)||(15882063-15882126)
chr1 (14-113)||(25559984-25560085)
chr1 (38-113)||(26345042-26345117)
chr1 (133-196)||(32910278-32910341)
chr1 (146-196)||(6694282-6694332)
chr1 (147-204)||(12973688-12973745)
chr1 (133-209)||(15880047-15880123)
chr1 (144-196)||(26344962-26345014)
chr1 (37-97)||(27350681-27350741)
chr1 (133-213)||(35980170-35980250)
chr1 (135-178)||(17651868-17651911)
chr1 (133-196)||(17989162-17989225)
chr1 (39-113)||(36203427-36203501)
chr1 (131-196)||(19051216-19051280)
chr1 (132-213)||(24630070-24630151)
chr1 (44-113)||(40095405-40095474)
chr1 (144-197)||(52828937-52828990)
chr1 (37-113)||(12973582-12973658)
chr1 (37-113)||(16529484-16529560)
chr1 (37-113)||(32910358-32910429)
chr1 (37-109)||(39158311-39158383)
chr1 (33-61)||(44918561-44918589)
[»] scaffold0470 (2 HSPs)
scaffold0470 (133-192)||(6355-6414)
scaffold0470 (37-113)||(6263-6339)
[»] scaffold0012 (1 HSPs)
scaffold0012 (133-181)||(241120-241168)


Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 37 - 251
Target Start/End: Complemental strand, 2308175 - 2307960
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaat---gcggtttgagttggatcggttagttcagnnnnnnnnnncaa 133  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||   | ||||||||||||||||||||||||||          |||    
T  2308175 ggtttggttcggttgatttttaaaataaaatttgaaccacaccaaatcaaaccaataatgtggtttgagttggatcggttagttcagtttttttt--caa 2308078  T
Q  134 gacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgacgataatttaattcnnnnnnn 233  Q
     |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||           
T  2308077 aacaatacaattttttgtttgcaacattaaaatcgaattaaaaagttataacacaacatatttctagcaatatttcggacgataatttaattcttttttt 2307978  T
Q  234 gttcaaatcatcacaagt 251  Q
    ||||||||||||||||||    
T  2307977 gttcaaatcatcacaagt 2307960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 213
Target Start/End: Original strand, 23032697 - 23032869
Alignment:
Q  38 gtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggttagttcagnnnnnnnnnncaagaca 137  Q
    ||||||||||||||| |||||||||||||||||||||| | |||| |||||||||| ||||||  |||||||||||  | | |          | |||||    
T  23032697 gtttggttcggttgacttttaaaataaaatttgaaccaaaccaaaccaaaccaatgaggtttggattggatcggttgatactg----tttttgcgagaca 23032792  T
Q  138 ataca-attttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 213  Q
    |||||  |||||||||| ||||||||||||  | |||||||| || ||||||||||||||| ||||||| |||||||    
T  23032793 atacattttttttgttttcaacatgaaaattcagttaaaaaggtaaaacacaacatatttccagcaatacttccgac 23032869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 209
Target Start/End: Original strand, 40848873 - 40849042
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggttagttcagnnnnnnnnnncaagac 136  Q
    |||||||||||||||| ||||||||||||||  |||||| || ||| ||||| ||||||||||| |||| ||||||| || | |             |||    
T  40848873 ggtttggttcggttgacttttaaaataaaatccgaaccaaataaaaccaaactaatgcggtttgggttgaatcggttggtgcggtttttttgg----gac 40848968  T
Q  137 aatacaa-ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttc 209  Q
    ||||||| |||||||||| |||||| |||||||| |||||||| || ||||||||||||||| |||||| ||||    
T  40848969 aatacaatttttttgttttcaacattaaaatcgagttaaaaagataaaacacaacatatttccagcaatgtttc 40849042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 48642802 - 48642875
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcg 110  Q
    |||||||||||||||| ||| ||||| |||||||||||| | |||| ||||||||||||||||| |||||||||    
T  48642802 ggtttggttcggttgactttaaaaattaaatttgaaccaaaccaaaccaaaccaatgcggtttgggttggatcg 48642875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 47646780 - 47646704
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    ||||||||||||||||||||||||||||| ||||||||| | |||| |||| ||| | |||||| ||||||||||||    
T  47646780 ggtttggttcggttgatttttaaaataaagtttgaaccaaaccaaaccaaatcaacgtggtttgtgttggatcggtt 47646704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 26215076 - 26214999
Alignment:
Q  136 caatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 213  Q
    ||||| |||||||||||| |||||| |||||| |||||||||| || ||||||||||||||| | |||| ||||||||    
T  26215076 caatataattttttgtttccaacattaaaatcaaattaaaaaggtaaaacacaacatatttccatcaatgtttccgac 26214999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 27215165 - 27215101
Alignment:
Q  135 acaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttcta 199  Q
    ||||||||||||||||||| |||||| ||||| || ||||||||||| ||||||||||| |||||    
T  27215165 acaatacaattttttgtttccaacattaaaattgagttaaaaagttaaaacacaacatacttcta 27215101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 6880073 - 6880010
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    ||||||||||||||||||||| |||| | |||||| | ||||||||||| ||||||||||||||    
T  6880073 agacaatacaattttttgttttcaaccttaaaatcaagttaaaaagttaaaacacaacatattt 6880010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 32942139 - 32942066
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcg 110  Q
    |||||| ||||||||| |||||||||| |||  |||||| | |||| |||||||||| ||||||||||||||||    
T  32942139 ggtttgattcggttgacttttaaaatacaatccgaaccaaaccaaaccaaaccaatgtggtttgagttggatcg 32942066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 8568614 - 8568538
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||| ||||||||||| ||||||||||||||  |||| | || ||||||||| |||||||||||  |||||||||||    
T  8568614 ggttcggttcggttgacttttaaaataaaatccgaactaaatgaaatcaaactaatgcggtttggattggatcggtt 8568538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 26524913 - 26524833
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 213  Q
    ||||||| ||||||| ||||| |||||| |||||  | |||||||| || |||||||||||||||||||||| ||| ||||    
T  26524913 agacaatgcaattttctgtttccaacattaaaataaagttaaaaagctaaaacacaacatatttctagcaatgttttcgac 26524833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 30079656 - 30079576
Alignment:
Q  33 atgcggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    ||||||||||||| | |||| ||| |||||||||| | ||| | |  ||||||||||||||||||||| ||||||||||||    
T  30079656 atgcggtttggtttgattgactttaaaaataaaatctaaacgaaactaaatcaaaccaatgcggtttgggttggatcggtt 30079576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 47483728 - 47483791
Alignment:
Q  134 gacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttc 197  Q
    |||||||| ||||||||||| |||||| |||||||| ||||||| || | ||||||||||||||    
T  47483728 gacaatacgattttttgttttcaacattaaaatcgagttaaaaaattgttacacaacatatttc 47483791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 29211615 - 29211546
Alignment:
Q  135 acaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaat 204  Q
    |||||||||||||||||||||||||| |||||  | |||||||  || ||||||| ||||||| ||||||    
T  29211615 acaatacaattttttgtttgcaacattaaaatatagttaaaaaagtaaaacacaatatatttcgagcaat 29211546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 1739919 - 1739971
Alignment:
Q  144 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    ||||||||||  ||||| |||||||||||||||||||| |||||||| |||||    
T  1739919 ttttttgtttttaacattaaaatcgaattaaaaagttaaaacacaacgtattt 1739971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 20306715 - 20306775
Alignment:
Q  136 caatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    |||| ||||||||| ||| |||| |||||||||| ||||||||| | ||||||||||||||    
T  20306715 caatgcaattttttatttccaacttgaaaatcgagttaaaaagtaaaaacacaacatattt 20306775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 29211709 - 29211633
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    ||||| ||||||| ||||||| ||||| |||  |||||| | |||| ||||||||||| | ||||||||||||||||    
T  29211709 ggtttcgttcggtcgatttttgaaatacaatccgaaccaaaccaaaccaaaccaatgcaggttgagttggatcggtt 29211633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 31287731 - 31287679
Alignment:
Q  144 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    |||||||||| |||||| |||||| ||||||||||||| | ||||||||||||    
T  31287731 ttttttgtttccaacattaaaatcaaattaaaaagttaaaccacaacatattt 31287679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 46147238 - 46147309
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    ||||||||| |||||| |||||||||||||| |||||||     || ||||||||||||||||  ||||||||||||    
T  46147238 ggtttggtttggttgacttttaaaataaaatctgaacca-----aaccaaaccaatgcggtttacgttggatcggtt 46147309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 524844 - 524773
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaat 204  Q
    ||||||||||||||||| ||| |||||| ||||| || |||| ||| || | ||||||||||||| ||||||    
T  524844 agacaatacaattttttattttcaacattaaaattgagttaagaaggtaaagcacaacatatttccagcaat 524773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 30079561 - 30079498
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    |||| |||||||||||||||| |||||| |||||| | |||||||| || ||||||| ||||||    
T  30079561 agacgatacaattttttgtttccaacattaaaatcaacttaaaaagctaaaacacaatatattt 30079498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 43202541 - 43202604
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    ||||||||||||||||||||| |||||| |||||  | |||||||  || ||||||||||||||    
T  43202541 agacaatacaattttttgtttccaacattaaaattaagttaaaaaagtaaaacacaacatattt 43202604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 8118340 - 8118302
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaacca 75  Q
    |||||||||||||||||||| |||||||||| |||||||    
T  8118340 ggtttggttcggttgattttaaaaataaaatctgaacca 8118302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 27456471 - 27456521
Alignment:
Q  147 tttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttc 197  Q
    ||||||| |||||| ||||||||||| ||||| || |||||||||||||||    
T  27456471 tttgtttccaacattaaaatcgaattgaaaaggtaaaacacaacatatttc 27456521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 196
Target Start/End: Original strand, 37375438 - 37375496
Alignment:
Q  138 atacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    |||||||||||||||| |||||| |||||| | ||||||| ||  ||||||||||||||    
T  37375438 atacaattttttgtttccaacattaaaatcaagttaaaaattttaaacacaacatattt 37375496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 2308210 - 2308177
Alignment:
Q  12 atgaaccgaaagataaaaattatgcggtttggtt 45  Q
    |||||||| |||||||||||||||||||||||||    
T  2308210 atgaaccggaagataaaaattatgcggtttggtt 2308177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 10338773 - 10338720
Alignment:
Q  144 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttc 197  Q
    |||||||||| |||| | |||||| | |||||||| ||||||||||||||||||    
T  10338773 ttttttgttttcaacgttaaaatcaatttaaaaagctataacacaacatatttc 10338720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 29628212 - 29628257
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaag 178  Q
    ||||||||||||||||||||| |||||| |||| ||| ||||||||    
T  29628212 agacaatacaattttttgtttccaacattaaaaccgagttaaaaag 29628257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 31013029 - 31012969
Alignment:
Q  135 acaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    ||||||||||||||||||| |||||| |||| | | ||||||||||| ||||||| ||||||    
T  31013029 acaatacaattttttgttttcaacattaaaa-caagttaaaaagttaaaacacaatatattt 31012969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 7685976 - 7685940
Alignment:
Q  39 tttggttcggttgatttttaaaataaaatttgaacca 75  Q
    ||||||||  |||||||||||||||||||||||||||    
T  7685976 tttggttcatttgatttttaaaataaaatttgaacca 7685940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 7697306 - 7697382
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||| ||||| ||||||||||||||  | | || | |||| |||||||||||||||||  || ||||||||    
T  7697306 ggtttggttctgttgaattttaaaataaaatccggatcaaaccaaaccaaaccaatgcggtttggatttgatcggtt 7697382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 10481705 - 10481629
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| ||||||||||||||||||| || | ||||||||||||||| |||||||||||||||||||    
T  10481705 ggtttggttcggttgacttttaaaataaaatttgaatcaaaccaaatcaaaccaatgtggtttgagttggatcggtt 10481629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 2832454 - 2832378
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| ||||||||||||||  ||| || | |||||||||||||||||||||| ||| ||||||||    
T  2832454 ggtttggttcggttgacttttaaaataaaatccgaatcaaaccaaatcaaaccaatgcggtttgggtttgatcggtt 2832378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 20846494 - 20846569
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| ||||||||||||||   ||||| | |||||||||||||||||||||| ||||||||||||    
T  20846494 ggtttggttcggttgacttttaaaataaaatccaaacca-accaaatcaaaccaatgcggtttgggttggatcggtt 20846569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 26292014 - 26291940
Alignment:
Q  39 tttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    ||||||||||||||||||||||||| ||| ||||||| | ||||||||||||||||  |||| ||| ||||||||    
T  26292014 tttggttcggttgatttttaaaatagaatctgaaccaaaccaaatcaaaccaatgcaatttgggttagatcggtt 26291940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 25465909 - 25465974
Alignment:
Q  131 caagacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    ||||||||||||||||||||||| |||||| |||||| | |||||| | || ||||||||||||||    
T  25465909 caagacaatacaattttttgttttcaacattaaaatcaagttaaaaggctaaaacacaacatattt 25465974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 26758246 - 26758322
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| |||||||||||| | ||| ||| | ||||  |||||||||||||||| |||| |||||||    
T  26758246 ggtttggttcggttgacttttaaaataaagtctgatccaaaccaaactaaaccaatgcggtttgggttgtatcggtt 26758322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 52632141 - 52632214
Alignment:
Q  131 caagacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaat 204  Q
    |||||||| | |||||||||||| |||||| |||||||| |||||||  || | |||||||||||| |||||||    
T  52632141 caagacaacataattttttgtttccaacattaaaatcgagttaaaaatgtaaagcacaacatatttttagcaat 52632214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 2832362 - 2832298
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttc 197  Q
    ||||||||||||||| ||||| |||||| |||||||| || ||||| || |||||||| ||||||    
T  2832362 agacaatacaattttatgttttcaacattaaaatcgagtttaaaaggtaaaacacaacgtatttc 2832298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 4554708 - 4554784
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| ||| ||| ||| ||   ||||| | |||| ||||| ||||||||||||||||||||||||    
T  4554708 ggtttggttcggttgactttaaaagtaacatccaaaccaaaccaaaccaaactaatgcggtttgagttggatcggtt 4554784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 17144790 - 17144714
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| |||||||||| |||  ||| || | |||  |||||||||| |||||| ||||||||||||    
T  17144790 ggtttggttcggttgacttttaaaatagaatccgaagcaaaccaagccaaaccaatgtggtttgggttggatcggtt 17144714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 54122043 - 54122115
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatc 109  Q
    |||||||||||||||| ||||||||||||||  |||||| | |||| |||| |||||  |||||| |||||||    
T  54122043 ggtttggttcggttgacttttaaaataaaatccgaaccaaaccaaaccaaaacaatgatgtttgaattggatc 54122115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 55467702 - 55467635
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatc 109  Q
    |||||||||||||||| ||||||||||||||  ||||     ||||||||||||||||||||||  |||||||    
T  55467702 ggtttggttcggttgacttttaaaataaaatccgaac-----caaatcaaaccaatgcggtttggattggatc 55467635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 8557926 - 8557863
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    |||| |||||||||||||||| |||||| |||||| | |||||||| |  ||||||||||||||    
T  8557926 agacgatacaattttttgtttccaacattaaaatcaagttaaaaagcttaaacacaacatattt 8557863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 116
Target Start/End: Complemental strand, 42363285 - 42363207
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggttagt 116  Q
    |||||||||||||||| ||| |||| |||||  |||||| | |||||| |||||||||||||||  |||||||| |||||    
T  42363285 ggtttggttcggttgactttaaaaacaaaatccgaaccaaaccaaatc-aaccaatgcggtttggtttggatcgattagt 42363207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 4554811 - 4554863
Alignment:
Q  144 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    ||||||||||||||||| |||||    ||||||||||| ||||||||||||||    
T  4554811 ttttttgtttgcaacattaaaattaggttaaaaagttaaaacacaacatattt 4554863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 8558006 - 8557942
Alignment:
Q  49 ttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||| ||| ||||||||||  |||||| | |||| ||||||||||||||||| || |||||||||    
T  8558006 ttgactttaaaaataaaatccgaaccaaaccaaaccaaaccaatgcggtttgggtcggatcggtt 8557942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 54122437 - 54122489
Alignment:
Q  144 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    |||||||||| |||||| |||||| ||||||||||||| | || |||||||||    
T  54122437 ttttttgttttcaacattaaaatcaaattaaaaagttaaaccataacatattt 54122489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 213
Target Start/End: Complemental strand, 27572105 - 27571933
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggttagttcagnnnnnnnnnncaagac 136  Q
    |||||||||||||||  ||||||||||||||  |||||| | |||| ||||||||||||||||| |||||||||||| || | |          | ||||    
T  27572105 ggtttggttcggttgtcttttaaaataaaatccgaaccaaaccaaaccaaaccaatgcggtttgggttggatcggttggtgcgg----ttttttcgagac 27572010  T
Q  137 aatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 213  Q
    ||||||||||||||||| |||||| ||||| || |||||||  || ||||| ||||||||| |||||| ||| ||||    
T  27572009 aatacaattttttgtttccaacattaaaattgagttaaaaaagtaaaacacgacatatttccagcaatgttttcgac 27571933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 2589082 - 2589162
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 213  Q
    ||||||||||||||||||||| |||  | |||||| | ||||||||||| ||||||||||| |||| ||||| ||||||||    
T  2589082 agacaatacaattttttgtttccaattttaaaatcaagttaaaaagttaaaacacaacatacttctggcaatgtttccgac 2589162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 18845623 - 18845703
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 213  Q
    |||| |||||||||||||||| |||||| |||||| | ||||||||  | ||||||||||| |||||||||| ||||||||    
T  18845623 agacgatacaattttttgtttccaacattaaaatcaagttaaaaagccaaaacacaacataattctagcaatgtttccgac 18845703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 41454886 - 41454958
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatc 109  Q
    |||| ||||||||||| |||||||||||||| ||||||| | |||| |||||||||||||||||  |||||||    
T  41454886 ggttcggttcggttgacttttaaaataaaatctgaaccaaaccaaaccaaaccaatgcggtttggattggatc 41454958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 34969352 - 34969423
Alignment:
Q  42 ggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    ||||||||||| |||||||||||||||| ||||  |||||| |||||||||| | |||| ||||||||||||    
T  34969352 ggttcggttgacttttaaaataaaatttaaacctaatcaaaccaaaccaatgtgatttgggttggatcggtt 34969423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 22747631 - 22747557
Alignment:
Q  39 tttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    ||||||||| |||| |||||||||||||||||||| | | |||| ||||| ||||| ||||| ||||||||||||    
T  22747631 tttggttcgattgacttttaaaataaaatttgaacaaaaccaaaccaaactaatgcagtttgggttggatcggtt 22747557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 6633342 - 6633413
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    ||||||||| |||||| |||||||||||||| |||||||     || |||||||||| |||||||||||||||||||    
T  6633342 ggtttggtttggttgacttttaaaataaaatctgaacca-----aaccaaaccaatgtggtttgagttggatcggtt 6633413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 209
Target Start/End: Original strand, 18432195 - 18432271
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttc 209  Q
    |||||| |||||||||||||| | |||| |||||||| |||||||| || ||||||||||||||  | |||||||||    
T  18432195 agacaacacaattttttgttttcgacattaaaatcgagttaaaaaggtaaaacacaacatattttcaacaatatttc 18432271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 20192037 - 20191968
Alignment:
Q  39 tttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||| ||||||||||||||  |||| |     ||||||||||||||||||||| |||||||||||    
T  20192037 tttggttcggttgacttttaaaataaaatccgaacta-----aatcaaaccaatgcggtttgaattggatcggtt 20191968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 691519 - 691467
Alignment:
Q  144 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    |||||||||| |||||| |||||| | ||||||||||| ||||||||||||||    
T  691519 ttttttgtttccaacattaaaatcaagttaaaaagttaaaacacaacatattt 691467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 6595103 - 6595155
Alignment:
Q  144 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    |||||||||| |||||| ||||||  |||||||||||| ||||||||||||||    
T  6595103 ttttttgtttccaacattaaaatcagattaaaaagttaaaacacaacatattt 6595155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 6633440 - 6633504
Alignment:
Q  144 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatattt 208  Q
    |||||||||| |||||| |||||| | |||||||| || ||||||||||||||  ||||||||||    
T  6633440 ttttttgttttcaacattaaaatccagttaaaaaggtaaaacacaacatattttcagcaatattt 6633504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 6718697 - 6718761
Alignment:
Q  132 aagacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    ||||||||||||||||||||||  ||| | ||||| || |||||||| |||||||||| ||||||    
T  6718697 aagacaatacaattttttgtttttaacgttaaaattgagttaaaaagctataacacaatatattt 6718761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 11402703 - 11402767
Alignment:
Q  132 aagacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    ||||| |||||||||||||||| |||||| |||||| | |||||||| |  ||||||||||||||    
T  11402703 aagacgatacaattttttgtttccaacattaaaatcaagttaaaaagctgaaacacaacatattt 11402767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 25495207 - 25495259
Alignment:
Q  144 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    |||||||||| |||||| |||||| |||||||||| || ||||||||||||||    
T  25495207 ttttttgttttcaacattaaaatcaaattaaaaaggtaaaacacaacatattt 25495259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 26007345 - 26007281
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttc 197  Q
    |||||||| ||||| | |||| |||||| |||||| | |||||||| ||||||||||||||||||    
T  26007345 agacaatataatttgtcgttttcaacattaaaatcaagttaaaaagctataacacaacatatttc 26007281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 41454990 - 41455042
Alignment:
Q  144 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    |||||||||| |||||| |||||| |||||||||| || ||||||||||||||    
T  41454990 ttttttgtttccaacattaaaatcaaattaaaaagctaaaacacaacatattt 41455042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 34111748 - 34111677
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaat 204  Q
    |||||||||||||||||||||  || || |||||| |||||||||| ||  || ||||||||||| ||||||    
T  34111748 agacaatacaattttttgtttttaatatcaaaatcaaattaaaaaggtaacacgcaacatatttccagcaat 34111677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 207
Target Start/End: Original strand, 23411797 - 23411871
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatt 207  Q
    ||||||| ||||||||||||| |||||| |||||| ||| | || | || ||| ||||||||||| |||||||||    
T  23411797 agacaattcaattttttgttttcaacattaaaatcaaatcataaggctaaaacgcaacatatttcaagcaatatt 23411871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 26007435 - 26007358
Alignment:
Q  39 tttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggttagt 116  Q
    ||||||| |||| | |||||||||||||| ||||||| | |||| ||||  || | ||| ||||||||||||||||||    
T  26007435 tttggtttggtttacttttaaaataaaatctgaaccaaaccaaaccaaattaacgtggtctgagttggatcggttagt 26007358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 7591532 - 7591469
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttc 197  Q
    |||||||| |||||||||||| |||||| |||||  | ||||||||||| || ||||||||||||    
T  7591532 agacaatataattttttgttttcaacattaaaat-aagttaaaaagttaaaatacaacatatttc 7591469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 25495114 - 25495178
Alignment:
Q  44 ttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggat 108  Q
    ||||||||||||||||||||||||  |||| | | |||| | |||||||| ||||||| ||||||    
T  25495114 ttcggttgatttttaaaataaaatccgaacaaaaccaaacccaaccaatgtggtttgaattggat 25495178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 33792789 - 33792841
Alignment:
Q  144 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    |||||||||| |||| | |||||| |||||||||| || ||||||||||||||    
T  33792789 ttttttgttttcaacgttaaaatcaaattaaaaaggtaaaacacaacatattt 33792841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 892308 - 892237
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaat 204  Q
    |||||||| |||||||||||| |||||| |||||||| ||| ||||||| ||||||||||||||||||||||    
T  892308 agacaatataattttttgttttcaacattaaaatcgagttagaaagttaaaacacaacatatttctagcaat 892237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 4562966 - 4563029
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    ||||||||||||||||||||| |||||| |||||||| |||||||| |||||||||||||||||    
T  4562966 agacaatacaattttttgtttccaacattaaaatcgagttaaaaagctataacacaacatattt 4563029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 19135172 - 19135096
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| |||||||||||||| ||||||| | |||||||||| |||||| ||||  |||||||||||    
T  19135172 ggtttggttcggttgacttttaaaataaaatatgaaccaaaccaaatcaaactaatgcgatttggattggatcggtt 19135096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 14564543 - 14564623
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 213  Q
    |||||||||||||||||||||  ||||| |||||| | |||||||  || ||||||||||||||||| |||| ||||||||    
T  14564543 agacaatacaattttttgtttcgaacattaaaatcaagttaaaaaactaaaacacaacatatttctaacaatgtttccgac 14564623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 19135080 - 19135009
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaat 204  Q
    ||||||||||||||||||||| |||||| |||||||| |||||||| || |||||  |||||||| ||||||    
T  19135080 agacaatacaattttttgttttcaacattaaaatcgagttaaaaaggtaaaacacggcatatttccagcaat 19135009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 28632958 - 28633033
Alignment:
Q  38 gtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    ||||||||||||||| ||||||||||| |||||||||| | | || |||| |||||||||||  ||||||||||||    
T  28632958 gtttggttcggttgacttttaaaataatatttgaaccaaaccgaaccaaatcaatgcggttttggttggatcggtt 28633033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 7170154 - 7170081
Alignment:
Q  40 ttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||| |||||||| |||||||||||||||  ||||| | ||||||||||||||| ||||||  |||||||||||    
T  7170154 ttggatcggttgacttttaaaataaaattcaaaccaaaccaaatcaaaccaatgtggtttggattggatcggtt 7170081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 29048230 - 29048291
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatat 194  Q
    |||||||| | |||||||||| |||||| |||||| ||||||||||||| ||||||||||||    
T  29048230 agacaataaatttttttgtttccaacattaaaatcaaattaaaaagttaaaacacaacatat 29048291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 22413860 - 22413936
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| |||||||||||||| ||||| | | ||||  ||||||||||||||||   ||||||||||    
T  22413860 ggtttggttcggttgacttttaaaataaaatctgaacaaaaacaaacgaaaccaatgcggtttggaatggatcggtt 22413936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 223
Target Start/End: Complemental strand, 13859357 - 13859268
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgacgataatttaa 223  Q
    ||||||||||||||||  ||| |||||  |||||| | |||||| |||||||||||||||||||  |||||| |||||||| ||| |||||    
T  13859357 agacaatacaattttta-tttccaacactaaaatcaagttaaaaggttataacacaacatattttcagcaatgtttccgacaatattttaa 13859268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 7170048 - 7169988
Alignment:
Q  144 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaat 204  Q
    |||||| ||| |||| | |||||| ||||||||||||| |||||||||||||| |||||||    
T  7170048 tttttttttttcaacgttaaaatcaaattaaaaagttaaaacacaacatatttttagcaat 7169988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 7676324 - 7676260
Alignment:
Q  132 aagacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    |||||||||||||||||| |||  ||||| |||||||| |||||||| || || |||||||||||    
T  7676324 aagacaatacaattttttcttttaaacattaaaatcgagttaaaaaggtaaaatacaacatattt 7676260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 28633049 - 28633128
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 213  Q
    |||||||| ||||||| |||| |||||| | |||||| |||||||| || || |||||||||||||| |||| ||||||||    
T  28633049 agacaatataattttt-gttttcaacattagaatcgatttaaaaaggtaaaatacaacatatttctaacaatgtttccgac 28633128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 197
Target Start/End: Original strand, 4577206 - 4577261
Alignment:
Q  142 aattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttc 197  Q
    |||||||| |||  ||||| |||||||| ||||||| |||||||||||||||||||    
T  4577206 aattttttatttttaacattaaaatcgagttaaaaacttataacacaacatatttc 4577261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 8064604 - 8064659
Alignment:
Q  137 aatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacat 192  Q
    ||||||||||||||||| |||||| |||||| | |||||||| || ||||||||||    
T  8064604 aatacaattttttgtttccaacattaaaatcaagttaaaaagctaaaacacaacat 8064659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 30752646 - 30752709
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    ||||||||||||||||||||| |||| | |||||||| |||||||  || |||| |||||||||    
T  30752646 agacaatacaattttttgtttccaacttcaaaatcgagttaaaaaactaaaacataacatattt 30752709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 17306470 - 17306543
Alignment:
Q  135 acaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttc 209  Q
    ||||||||||||||||||| ||  || |||||| | ||||||||||| ||||| ||||| |||||||||| ||||    
T  17306470 acaatacaattttttgttt-cattattaaaatcaagttaaaaagttaaaacacgacatacttctagcaatgtttc 17306543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 30752553 - 30752614
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggttt 99  Q
    |||||||||||||||| ||||||| |||||||  || || | |||||||||||||||||||||    
T  30752553 ggtttggttcggttgacttttaaa-taaaattcaaaacaaaccaaatcaaaccaatgcggttt 30752614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 31945513 - 31945459
Alignment:
Q  14 gaaccgaaagataaaaat-tatgcggtttggttcggttgatttttaaaataaaat 67  Q
    |||||| ||||||||||  |||||| |||||||||||||| ||||||||||||||    
T  31945513 gaaccgtaagataaaaaagtatgcgttttggttcggttgacttttaaaataaaat 31945459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 4562879 - 4562911
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaattt 69  Q
    |||||||||| ||||||||||||||||||||||    
T  4562879 ggtttggttcagttgatttttaaaataaaattt 4562911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 31945392 - 31945340
Alignment:
Q  144 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    |||||||||| ||| || |||||| |||||||||| || ||||||||||||||    
T  31945392 ttttttgtttccaatattaaaatcaaattaaaaagctaaaacacaacatattt 31945340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0664 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 193
Target Start/End: Original strand, 6030 - 6171
Alignment:
Q  49 ttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggttagttcagnnnnnnnnnncaagacaatacaattttt 148  Q
    |||||||||||||||||||| |||||| | |||| ||||||||||||||||| |||||||||||| || |||          | | ||||| ||||||||    
T  6030 ttgatttttaaaataaaattcgaaccaaaccaaaccaaaccaatgcggtttgggttggatcggtttgtgcag---ttgttatcgaaacaattcaattttt 6126  T
Q  149 tgtttgcaacatgaaaatcgaattaaaaagttataacacaacata 193  Q
    ||||| |||||| |||||| |||||||||| || ||| |||||||    
T  6127 tgtttacaacatcaaaatcaaattaaaaagctaaaacgcaacata 6171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 116
Target Start/End: Original strand, 4785260 - 4785337
Alignment:
Q  39 tttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggttagt 116  Q
    |||||||||||||| |||||||||| ||| ||||||| | |||| |||||||||||||||||| |||||| |||||||    
T  4785260 tttggttcggttgacttttaaaatataatatgaaccaaaccaaaccaaaccaatgcggtttgaattggattggttagt 4785337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 6591250 - 6591326
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| |||||||||||||||  ||||| | |||| |||| ||||| |||||||||||||| ||||    
T  6591250 ggtttggttcggttgacttttaaaataaaattctaaccaaaccaaaccaaaacaatgtggtttgagttggattggtt 6591326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 3129537 - 3129457
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 213  Q
    ||||||| ||||||||||||| |||||| |||||||| |||||||  || |||| |||||||||  |||||| ||||||||    
T  3129537 agacaatgcaattttttgttttcaacattaaaatcgagttaaaaatctaaaacataacatattttcagcaatgtttccgac 3129457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 33565979 - 33566055
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| || |||||||||||| |||||| | |||| ||||||| ||||||||   |||||||||||    
T  33565979 ggtttggttcggttgacttctaaaataaaattcgaaccaaaccaaaccaaaccagtgcggttttgattggatcggtt 33566055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 40436459 - 40436530
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| ||| ||||||||||||||||     | || ||||||||||||||||| ||||||||||||    
T  40436459 ggtttggttcggttgactttaaaaataaaatttgaac-----cgaaccaaaccaatgcggtttgggttggatcggtt 40436530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 4785355 - 4785418
Alignment:
Q  142 aattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaata 205  Q
    |||||||| ||| |||||| |||||| ||||||||||||| ||||||| |||||| ||||||||    
T  4785355 aattttttttttccaacattaaaatcaaattaaaaagttaaaacacaatatatttttagcaata 4785418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 6617037 - 6617096
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacat 192  Q
    ||||||||||||||||||||| |||| | |||||||| |||||||| || ||||||||||    
T  6617037 agacaatacaattttttgtttccaactttaaaatcgagttaaaaagctaaaacacaacat 6617096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 22811233 - 22811195
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaacca 75  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  22811233 ggtttggttcggttgacttttaaaataaaatttgaacca 22811195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 12074161 - 12074084
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttcc 210  Q
    ||||||||||||||||||||| |||||| |||||  | |||||| |  | ||||||||||||||| |||||| |||||    
T  12074161 agacaatacaattttttgtttccaacattaaaattaatttaaaatgcaaaaacacaacatatttcgagcaatgtttcc 12074084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 30254187 - 30254110
Alignment:
Q  36 cggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    ||||||||||||||||| ||| |||| | | ||||||||| | ||||  |||| |||||||||||| |||||||||||    
T  30254187 cggtttggttcggttgactttaaaaaaatattttgaaccaaaccaaacaaaactaatgcggtttgaattggatcggtt 30254110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 6616945 - 6617021
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||| ||||||||| |||||||||||||||  ||||| | |||| |||| ||||| ||||||||| |||| ||||    
T  6616945 ggtttgtttcggttgacttttaaaataaaattctaaccaaaccaaaccaaaacaatgtggtttgagtaggattggtt 6617021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 6591342 - 6591401
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacat 192  Q
    ||||||||||||||||| ||| |||| | |||||||| |||||||| || ||||||||||    
T  6591342 agacaatacaattttttatttccaactttaaaatcgagttaaaaagctaaaacacaacat 6591401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 6649542 - 6649613
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggat 108  Q
    |||||||||| ||||| ||||||||||||||   || || | |||| |||| ||||||||||||||||||||    
T  6649542 ggtttggttcagttgacttttaaaataaaatcctaatcaaaacaaagcaaaacaatgcggtttgagttggat 6649613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 11218972 - 11219035
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttg 100  Q
    ||||||||| |||||| |||||||||||| | |||| || |||||| ||||||||||| |||||    
T  11218972 ggtttggtttggttgacttttaaaataaagtctgaatcaaatcaaaccaaaccaatgcagtttg 11219035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 209
Target Start/End: Original strand, 12912604 - 12912675
Alignment:
Q  138 atacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttc 209  Q
    ||||| |||||||||| |||||| |||||| | ||||||  ||| ||||||||||||||| |||||| ||||    
T  12912604 atacagttttttgttttcaacattaaaatcaagttaaaacattaaaacacaacatatttccagcaatgtttc 12912675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 7428493 - 7428455
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaacca 75  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  7428493 ggtttggttcggttgacttttaaaataaaattcgaacca 7428455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 31497659 - 31497583
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| ||| ||||||| ||   ||||| | |||| ||||| ||||||||||| ||||||| ||||    
T  31497659 ggtttggttcggttgactttaaaaataacatccaaaccaaaccaaaccaaactaatgcggtttgggttggattggtt 31497583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 37162614 - 37162562
Alignment:
Q  144 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    |||||||||| |||||| |||| | ||||||||||||| ||||||| ||||||    
T  37162614 ttttttgttttcaacattaaaaccaaattaaaaagttaaaacacaatatattt 37162562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 38926392 - 38926340
Alignment:
Q  144 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    |||||||||| |||||| |||||| | |||||||| || ||||||||||||||    
T  38926392 ttttttgttttcaacattaaaatcaagttaaaaaggtaaaacacaacatattt 38926340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 44336795 - 44336866
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatc 109  Q
    |||||||||||||||| |||||||||| |||  |||||| | |||| |||||| ||| |||||| ||||||||    
T  44336795 ggtttggttcggttgacttttaaaatacaatccgaaccaaaccaaaccaaacctatgtggtttg-gttggatc 44336866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 25973 - 26037
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttc 197  Q
    ||||||||||||||||||||| |||||| |||||||| |||||||| || |||||||||||||||    
T  25973 agacaatacaattttttgttttcaacattaaaatcgagttaaaaaggtaaaacacaacatatttc 26037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 14631 - 14694
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| || || |||||||||||    
T  14631 agacaatacaattttttgtttgcaacattaaaatcgagttaaaaaggtaaaatacaacatattt 14694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 191
Target Start/End: Complemental strand, 11031700 - 11031546
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggttagttcagnnnnnnnnnncaagac 136  Q
    ||||||||| |||||| |||||||||||||| | |||||   ||||||||| ||||| |||||| |||||||||||| || | |           |||||    
T  11031700 ggtttggtttggttgacttttaaaataaaatcttaaccaacccaaatcaaatcaatgtggtttgggttggatcggttggtgcggcttttttttttaagac 11031601  T
Q  137 aatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaaca 191  Q
    ||||||||||||||||| |||||| |||||||| | |||||| ||||| ||||||    
T  11031600 aatacaattttttgttttcaacattaaaatcgagtcaaaaagctataatacaaca 11031546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 48338451 - 48338515
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttc 197  Q
    ||||||||||||||||||||| |||||| |||||||| |||||||| || |||||||||||||||    
T  48338451 agacaatacaattttttgttttcaacattaaaatcgagttaaaaaggtaaaacacaacatatttc 48338515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 29335179 - 29335108
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggat 108  Q
    ||||||||||||||| ||||||||||| ||| ||||||| | |||| ||||||||| |||||||||||||||    
T  29335179 ggtttggttcggttggtttttaaaatacaatatgaaccaaaccaaaccaaaccaatacggtttgagttggat 29335108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 20986444 - 20986520
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| || ||||||||||| ||||||| | |||| |||||||||||||||||  ||| |||||||    
T  20986444 ggtttggttcggttgacttataaaataaaatatgaaccaaaccaaaccaaaccaatgcggtttggattgaatcggtt 20986520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 48293383 - 48293303
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 213  Q
    ||||||||||||||||||||| |||||| |||||||| |||||||  || ||||| | ||||||| |||||| ||| ||||    
T  48293383 agacaatacaattttttgtttccaacattaaaatcgagttaaaaaagtaaaacacgaaatatttccagcaatgttttcgac 48293303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 17845008 - 17845087
Alignment:
Q  144 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgacgataatttaa 223  Q
    |||||||||| |||||| ||||| || |||||||| |||| ||||||||||||||||| || ||| |||| ||| |||||    
T  17845008 ttttttgttttcaacattaaaattgagttaaaaaggtatagcacaacatatttctagccatgttttcgacaatattttaa 17845087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 49640951 - 49641014
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    ||||||||||||||||| ||| |||||| |||||| | ||||| ||||| ||||||||||||||    
T  49640951 agacaatacaattttttttttccaacattaaaatcaagttaaagagttaaaacacaacatattt 49641014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 18881984 - 18881927
Alignment:
Q  166 tcgaattaaaaagttataacacaacatatttctagcaatatttccgacgataatttaa 223  Q
    |||| |||||||| ||||||||||||||||||||||||| ||||| || ||| |||||    
T  18881984 tcgagttaaaaagctataacacaacatatttctagcaatgtttccaacaatattttaa 18881927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 32223288 - 32223231
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaac 190  Q
    ||||||||||||||||||||| |||||| |||||| | |||||||| || ||||||||    
T  32223288 agacaatacaattttttgtttccaacattaaaatctagttaaaaaggtaaaacacaac 32223231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 8484695 - 8484763
Alignment:
Q  44 ttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggt 112  Q
    ||||||||| |||||||||||||  ||||||| |  ||| |||||||||||||||||  ||||||||||    
T  8484695 ttcggttgacttttaaaataaaacatgaaccaaactaaaccaaaccaatgcggtttggattggatcggt 8484763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 19753579 - 19753527
Alignment:
Q  39 tttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaa 91  Q
    |||||||||||||| ||||||||||||||| |||||| | |||| ||||||||    
T  19753579 tttggttcggttgacttttaaaataaaattcgaaccaaaccaaaccaaaccaa 19753527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 19786227 - 19786279
Alignment:
Q  39 tttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaa 91  Q
    |||||||||||||| ||||||||||||||| |||||| | |||| ||||||||    
T  19786227 tttggttcggttgacttttaaaataaaattcgaaccaaaccaaaccaaaccaa 19786279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 21069068 - 21069144
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||| |||| |||||| ||||||||| ||||| |||||| | ||| ||||||||||||||||||  |||||| ||||    
T  21069068 ggttcggtttggttgacttttaaaattaaattcgaaccaaaccaactcaaaccaatgcggtttggattggattggtt 21069144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 26674224 - 26674280
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaa 189  Q
    ||||||||||||||||||||| |||| | |||||||| |||||||| || |||||||    
T  26674224 agacaatacaattttttgtttccaactttaaaatcgagttaaaaaggtaaaacacaa 26674280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 51907177 - 51907237
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacata 193  Q
    |||||||| |||||||||||| |||||| |||||| | |||||||| || |||||||||||    
T  51907177 agacaatataattttttgttttcaacattaaaatcaagttaaaaaggtaaaacacaacata 51907237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 5122355 - 5122292
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    |||||||||||||||||||||  ||||| |||||| | ||||||||||  |||||||| |||||    
T  5122355 agacaatacaattttttgtttctaacattaaaatcaagttaaaaagttgaaacacaacctattt 5122292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 6101993 - 6102056
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    ||||||||||||||||||||| |||||  |||||| | |||||| | || ||||||||||||||    
T  6101993 agacaatacaattttttgtttccaacagtaaaatcaagttaaaaggataaaacacaacatattt 6102056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 196
Target Start/End: Original strand, 8312002 - 8312061
Alignment:
Q  137 aatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    ||||||||||||||||| |||||| |||||| | |||||||| || ||||||||| ||||    
T  8312002 aatacaattttttgtttacaacattaaaatcaagttaaaaagctaaaacacaacaaattt 8312061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 15723905 - 15723980
Alignment:
Q  38 gtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    ||||||||||||||| ||| ||||||| ||   ||||| | |||| ||||| ||||||||||| ||||||||||||    
T  15723905 gtttggttcggttgactttaaaaataacatccaaaccaaaccaaaccaaactaatgcggtttgggttggatcggtt 15723980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 18319540 - 18319477
Alignment:
Q  132 aagacaatacaattttttgtttgcaaca-tgaaaatcgaattaaaaagttataacacaacatat 194  Q
    ||||||||||||||||||||||  |||| | |||||| |||||||||| || ||||||||||||    
T  18319540 aagacaatacaattttttgtttttaacattaaaaatcaaattaaaaaggtagaacacaacatat 18319477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 18399141 - 18399204
Alignment:
Q  132 aagacaatacaattttttgtttgcaaca-tgaaaatcgaattaaaaagttataacacaacatat 194  Q
    ||||||||||||||||||||||  |||| | |||||| |||||||||| || ||||||||||||    
T  18399141 aagacaatacaattttttgtttttaacattaaaaatcaaattaaaaaggtagaacacaacatat 18399204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 23625960 - 23625885
Alignment:
Q  38 gtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||| |||| |||||||||||||| |||| ||   |||| |||| ||||||||||||  |||||||||||    
T  23625960 gtttggttcgcttgacttttaaaataaaatctgaatcaacccaaaccaaatcaatgcggtttggattggatcggtt 23625885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 42198784 - 42198873
Alignment:
Q  15 aaccgaaagataaaaattatgcggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatc 109  Q
    ||||| ||||||||||  ||||||||| |||  ||||| |||||||||||||| |||||||     || ||||| |||| |||||||||||||||    
T  42198784 aaccgcaagataaaaaacatgcggttttgttttgttgacttttaaaataaaatctgaacca-----aaccaaactaatgtggtttgagttggatc 42198873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 21069171 - 21069224
Alignment:
Q  143 attttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    ||||||||||| |||||| |||||| |||||||||| || ||||| ||||||||    
T  21069171 attttttgttttcaacattaaaatcaaattaaaaagctaaaacactacatattt 21069224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 45983500 - 45983565
Alignment:
Q  144 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttct-agcaatattt 208  Q
    |||||||||| |||||| ||||||   ||||||||||| |||||||||||||| | ||||||||||    
T  45983500 ttttttgtttccaacattaaaatcaggttaaaaagttaaaacacaacatatttttcagcaatattt 45983565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 48602495 - 48602434
Alignment:
Q  135 acaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    |||||||||||| |||||| |||||| |||||  | ||||||||||| |||| |||||||||    
T  48602495 acaatacaatttgttgttttcaacattaaaattaagttaaaaagttaaaacaaaacatattt 48602434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 48684892 - 48684945
Alignment:
Q  136 caatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaa 189  Q
    |||||||||||||| ||| |||||| |||||| |||||||||| || |||||||    
T  48684892 caatacaattttttatttccaacattaaaatcaaattaaaaagctaaaacacaa 48684945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 23120213 - 23120161
Alignment:
Q  144 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    |||||||||| |||||| ||||||   ||||||||||| ||||||||||||||    
T  23120213 ttttttgtttccaacattaaaatcaggttaaaaagttaaaacacaacatattt 23120161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 42198904 - 42198956
Alignment:
Q  144 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    |||||||||| |||||| ||||||   ||||||||||| ||||||||||||||    
T  42198904 ttttttgttttcaacattaaaatcatgttaaaaagttaaaacacaacatattt 42198956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 28790620 - 28790680
Alignment:
Q  137 aatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttc 197  Q
    ||||||||||||||||| |||||| |||||||| |||||||| ||||||||||||||||||    
T  28790620 aatacaattttttgtttccaacattaaaatcgagttaaaaagctataacacaacatatttc 28790680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 30759708 - 30759632
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||| ||||||||  |||||||||||||||||||||| | |||| ||||||||||||||||| ||| ||||||||    
T  30759708 ggtttgattcggttggcttttaaaataaaatttgaaccaaaccaaaccaaaccaatgcggtttgtgttagatcggtt 30759632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 1331115 - 1331194
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 213  Q
    ||||||||||||||||||||| |||||| |||||||| || ||||| || ||||||||||||||  |||||||||| ||||    
T  1331115 agacaatacaattttttgtttccaacattaaaatcgagtt-aaaaggtaaaacacaacatattttcagcaatattttcgac 1331194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 5862691 - 5862615
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| ||||||||||||||  |||||| | |||||||||||||| |||||||  ||| |||||||    
T  5862691 ggtttggttcggttgacttttaaaataaaatccgaaccaaaccaaatcaaaccaatacggtttggattgaatcggtt 5862615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 17762852 - 17762933
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaa-tcgaattaaaaagttataacacaacatatttctagcaatatttccgac 213  Q
    ||||||||||||||||||||| |||||| |||| | || |||||||| |||||| ||||||||||  |||||| ||||||||    
T  17762852 agacaatacaattttttgtttccaacattaaaatttgagttaaaaagctataacgcaacatattttcagcaatgtttccgac 17762933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 31720049 - 31719988
Alignment:
Q  135 acaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    ||||||||||||||||||| |||||| |||||||| |||||||| || |||| |||||||||    
T  31720049 acaatacaattttttgtttccaacattaaaatcgagttaaaaaggtaaaacaaaacatattt 31719988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 6946523 - 6946459
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttc 197  Q
    ||||||||||||||||||||| |||||| |||||| | |||||||| || |||||||| ||||||    
T  6946523 agacaatacaattttttgtttccaacattaaaatcaagttaaaaaggtaaaacacaacttatttc 6946459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 13193921 - 13193992
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| ||||||||||||||  ||||     |||||||||||||||| ||||| ||||||||||||    
T  13193921 ggtttggttcggttgacttttaaaataaaatccgaac-----caaatcaaaccaatgcagtttgggttggatcggtt 13193992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 27301457 - 27301394
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    ||||||||||||||||||||| ||| || |||||||| |||||||| || ||||||| ||||||    
T  27301457 agacaatacaattttttgtttccaaaattaaaatcgagttaaaaaggtaaaacacaaaatattt 27301394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 12041562 - 12041492
Alignment:
Q  139 tacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttc 209  Q
    ||||||||||| ||| |||||| |||||||| |||||||| || || |||||||||||| |||||| ||||    
T  12041562 tacaattttttatttacaacattaaaatcgagttaaaaaggtaaaatacaacatatttccagcaatgtttc 12041492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 30761714 - 30761661
Alignment:
Q  144 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttc 197  Q
    |||||| ||| |||||| |||||||| |||||||||||||||| ||||||||||    
T  30761714 ttttttatttccaacattaaaatcgagttaaaaagttataacataacatatttc 30761661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 41461104 - 41461175
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| ||||||||||||||| ||||||     || |||||||||||||||||  ||| |||||||    
T  41461104 ggtttggttcggttgacttttaaaataaaattcgaacca-----aaccaaaccaatgcggtttggattgaatcggtt 41461175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 12841537 - 12841636
Alignment:
Q  12 atgaaccgaaagataaaaatt-atgcggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcg 110  Q
    ||||| || |||||||||||  ||||||||||||| |||||| |||||||||| |||  |||||  | |||| |||| |||||||||||| ||| |||||    
T  12841537 atgaatcgtaagataaaaatgcatgcggtttggtttggttgaattttaaaatacaatccgaaccgaaccaaaccaaatcaatgcggtttgggtttgatcg 12841636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 27301544 - 27301486
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttg 100  Q
    |||||| ||||||||| ||||||||||||||||||||||     || |||||||||||||||||    
T  27301544 ggtttgattcggttgacttttaaaataaaatttgaacca-----aaccaaaccaatgcggtttg 27301486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 12884537 - 12884579
Alignment:
Q  26 aaaaattatgcggtttggttcggttgatttttaaaataaaatt 68  Q
    ||||| |||||||||||||| |||||| |||||||||||||||    
T  12884537 aaaaagtatgcggtttggtttggttgacttttaaaataaaatt 12884579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 44085546 - 44085578
Alignment:
Q  81 aatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||||||| ||||||||||||    
T  44085546 aatcaaaccaatgcggtttgggttggatcggtt 44085578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 23475172 - 23475109
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttg 100  Q
    ||||||||||||||||||||||||||||||||||||| | | |||| ||||| |||||||||||    
T  23475172 ggtttggttcggttgatttttaaaataaaatttgaacaaaaccaaaccaaactaatgcggtttg 23475109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 213
Target Start/End: Complemental strand, 47984475 - 47984393
Alignment:
Q  131 caagacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 213  Q
    |||||||| |||||||||||||| | |||| |||||||| |||||||| || |||||||||| ||||  ||||||||||||||    
T  47984475 caagacaacacaattttttgttttcgacattaaaatcgagttaaaaaggtaaaacacaacatgtttcctgcaatatttccgac 47984393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 8165611 - 8165534
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtta 114  Q
    |||| ||||||||||| ||| |||||||||| ||||||| | |||| ||||| ||||||||||| |||||||||||||    
T  8165611 ggttcggttcggttgactttaaaaataaaatctgaaccaaaccaaaccaaacaaatgcggtttgggttggatcggtta 8165534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 8268751 - 8268831
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 213  Q
    ||||||| ||||||||||||| |||||| |||||| | |||||||| || ||||||||||||||| || ||| ||||||||    
T  8268751 agacaatgcaattttttgtttacaacattaaaatcaagttaaaaagctaaaacacaacatatttccagtaatgtttccgac 8268831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 10847504 - 10847424
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 213  Q
    ||||||||||||||||||||| |||||| ||||   ||||||||||||| ||||||||||||||  | |||| ||||||||    
T  10847504 agacaatacaattttttgtttccaacattaaaacaaaattaaaaagttaaaacacaacatattttcaacaatgtttccgac 10847424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 11074459 - 11074383
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| ||| |||||||||| ||||||  | |||| |||| ||||||||||||  |||||||||||    
T  11074459 ggtttggttcggttgactttaaaaataaaatctgaacctaaccaaaccaaatcaatgcggtttggattggatcggtt 11074383  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 15882126 - 15882063
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    |||||| |||||||||||||| ||||||  ||||| |||||||||| || ||||||||||||||    
T  15882126 agacaacacaattttttgttttcaacatttaaatcaaattaaaaagataaaacacaacatattt 15882063  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 25560085 - 25559984
Alignment:
Q  14 gaaccgaaagataaaaat-tatgcggtttgg--ttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcg 110  Q
    |||||| ||||||||||  ||||||||||||  ||||||||| |||||||||||| |  |||||| | ||||  ||||||||||||||||| ||||||||    
T  25560085 gaaccgtaagataaaaaagtatgcggtttggggttcggttgacttttaaaataaa-tccgaaccaaaccaaacaaaaccaatgcggtttgaattggatcg 25559987  T
Q  111 gtt 113  Q
    |||    
T  25559986 gtt 25559984  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 26345117 - 26345042
Alignment:
Q  38 gtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    ||||| ||||||||| ||||||||||||||  |||||| |  ||| |||||||||||||||||  |||||||||||    
T  26345117 gtttgattcggttgacttttaaaataaaatccgaaccaaacaaaaccaaaccaatgcggtttggattggatcggtt 26345042  T

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Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 32910341 - 32910278
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    |||| |||||||||||||||| |||||| |||||| | ||||||||||  ||||||||||||||    
T  32910341 agacgatacaattttttgtttccaacattaaaatcaagttaaaaagtttaaacacaacatattt 32910278  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 6694332 - 6694282
Alignment:
Q  146 ttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    |||||||| |||||| |||||| ||||||||||||| ||||||||||||||    
T  6694332 ttttgtttccaacattaaaatcaaattaaaaagttaaaacacaacatattt 6694282  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 12973688 - 12973745
Alignment:
Q  147 tttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaat 204  Q
    ||||||| |||||| |||||| ||||||||||||| ||| |||||||||| |||||||    
T  12973688 tttgtttacaacattaaaatcaaattaaaaagttaaaacgcaacatatttttagcaat 12973745  T

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Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 15880123 - 15880047
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttc 209  Q
    |||||| |||||||||||||| |||||| |||||| | |||||||| || | ||||||||||||  |||||| ||||    
T  15880123 agacaacacaattttttgtttccaacattaaaatcaagttaaaaaggtaaatcacaacatattttcagcaatgtttc 15880047  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 26345014 - 26344962
Alignment:
Q  144 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    ||||| |||| |||||| |||||| ||||||||||||| ||||||||||||||    
T  26345014 tttttggtttccaacattaaaatcaaattaaaaagttaaaacacaacatattt 26344962  T

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Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 27350681 - 27350741
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggt 97  Q
    ||||||||||  |||| ||||||||||||||| |||| | |||||| ||||||||||||||    
T  27350681 ggtttggttcaattgacttttaaaataaaattcgaacaaaatcaaaccaaaccaatgcggt 27350741  T

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Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 35980250 - 35980170
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 213  Q
    ||||||||||||||||||||| |||||| |||||| | |||||||| || || || ||||||||  |||||| ||| ||||    
T  35980250 agacaatacaattttttgtttccaacattaaaatcaagttaaaaaggtaaaaaacgacatattttcagcaatgttttcgac 35980170  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 178
Target Start/End: Original strand, 17651868 - 17651911
Alignment:
Q  135 acaatacaattttttgtttgcaacatgaaaatcgaattaaaaag 178  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||    
T  17651868 acaatacaattttttgtttccaacattaaaatcgagttaaaaag 17651911  T

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Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 17989162 - 17989225
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    |||||||| || ||||||||| |||||| ||||| || |||||||| || ||||||||||||||    
T  17989162 agacaatagaaatttttgttttcaacattaaaatggagttaaaaaggtaaaacacaacatattt 17989225  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 36203501 - 36203427
Alignment:
Q  39 tttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||| |||||||||| |||  |||||  | |||| ||||| ||||||||||| ||||||| ||||    
T  36203501 tttggttcggttgacttttaaaatacaatccgaaccgaaccaaaccaaactaatgcggtttgggttggattggtt 36203427  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 19051216 - 19051280
Alignment:
Q  131 caagacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 196  Q
    |||||||||| | ||||| |||| |||||| |||||| | ||||||||||| ||||||||||||||    
T  19051216 caagacaata-actttttcgttttcaacattaaaatcaagttaaaaagttaaaacacaacatattt 19051280  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 213
Target Start/End: Original strand, 24630070 - 24630151
Alignment:
Q  132 aagacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 213  Q
    |||||||||||||||||| ||| |||||| |||||||| | |||||| ||||| ||| || ||||  | |||| ||||||||    
T  24630070 aagacaatacaattttttattttcaacattaaaatcgagtcaaaaagctataatacagcacatttacaacaatgtttccgac 24630151  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 40095474 - 40095405
Alignment:
Q  44 ttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    ||||||| ||||||||||||||| |  ||||| | |||| |||||||||| ||||||  |||||||||||    
T  40095474 ttcggtttatttttaaaataaaactcaaaccaaaccaaaccaaaccaatgtggtttggattggatcggtt 40095405  T

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Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 52828937 - 52828990
Alignment:
Q  144 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttc 197  Q
    |||||||||| |||||| |||| ||| ||||| || ||||||||||||||||||    
T  52828937 ttttttgtttacaacattaaaaccgagttaaatagctataacacaacatatttc 52828990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 12973582 - 12973658
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    ||||||||| |||||||||| ||||||||||  ||| || | |||| ||||| |||| ||||||  |||||||||||    
T  12973582 ggtttggtttggttgattttgaaaataaaatccgaatcaaaccaaaccaaactaatgtggtttggattggatcggtt 12973658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 16529560 - 16529484
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||||||||||||    |||  ||||| | |||| ||||||||||||| |||| |||| ||||||    
T  16529560 ggtttggttcggttgatttttaaaaagtcattcaaaccaaaccaaaccaaaccaatgcggcttgaattggttcggtt 16529484  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 32910429 - 32910358
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| ||| |||||| ||| |||||||     || ||||| ||||||||||| ||||||||||||    
T  32910429 ggtttggttcggttgactttaaaaatagaatctgaacca-----aaacaaacaaatgcggtttgtgttggatcggtt 32910358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 39158383 - 39158311
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatc 109  Q
    ||||| ||||||| |  |||||||||||||| |||| || | |||| |||||||||| |||||| ||||||||    
T  39158383 ggtttagttcggtcggcttttaaaataaaatctgaatcaaaccaaaccaaaccaatgtggtttgggttggatc 39158311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 61
Target Start/End: Original strand, 44918561 - 44918589
Alignment:
Q  33 atgcggtttggttcggttgatttttaaaa 61  Q
    |||||||||||||||||||||||||||||    
T  44918561 atgcggtttggttcggttgatttttaaaa 44918589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 6355 - 6414
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacat 192  Q
    ||||||||||||||||||||| |||| | |||||||| |||||||| || ||||||||||    
T  6355 agacaatacaattttttgtttccaactttaaaatcgagttaaaaagctaaaacacaacat 6414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 6263 - 6339
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||| ||||||||| |||||||||||||||  ||||| | |||| |||| ||||| ||||||||| |||| ||||    
T  6263 ggtttgattcggttgacttttaaaataaaattctaaccaaaccaaaccaaaacaatgtggtttgagtaggattggtt 6339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 241168 - 241120
Alignment:
Q  133 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagtta 181  Q
    ||||||||||||| ||||||| |||||| ||||| ||||||||||||||    
T  241168 agacaatacaattatttgtttccaacattaaaatagaattaaaaagtta 241120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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