View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_high_68 (Length: 278)
Name: NF0925_high_68
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_high_68 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 260
Target Start/End: Complemental strand, 42968553 - 42968308
Alignment:
| Q |
20 |
gagggaactttatacaagaaccaagaaatggtaaaaataaatcatacacaagatgctcaatatgactgactgttatgtgcttttttcaacagttggagat |
119 |
Q |
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| T |
42968553 |
gagggaactttatacaagaaccaagaaatggtaaaaataaatcatacacaagatgctcaatatgactgattgttatgtgcttttttcaacagttggagat |
42968454 |
T |
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| Q |
120 |
ggttgcatgacagaaaagaacagctttattagcagatatgctcaatcatccatgcttgggttgggtgggtgctccatggattgt-----gacaattcact |
214 |
Q |
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| T |
42968453 |
ggttgcatgacaggaaagaacagctttattagcagatatgctcaaccatccatgcttgggttgggtgggtgctccatggattgtgacatgacaattcact |
42968354 |
T |
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| Q |
215 |
agttccacagtgtatggtattggacataaaactgaatgtctcaagg |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42968353 |
agttccacagtgtatggtattggacataaaactgaatgtctcaagg |
42968308 |
T |
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