View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_high_7 (Length: 530)
Name: NF0925_high_7
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 17 - 431
Target Start/End: Complemental strand, 38881364 - 38880950
Alignment:
| Q |
17 |
atggaagatggtaagcaagttgccaacatcgcgaccgagagatggaaaacgaaagagtttcggaaaaggattgtgatgaatgtgtaagaaacatgcctac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38881364 |
atggaagatggtaagcaagttgccaacatcgcgaccgagagatggaaaacgaaagagtttcggaaaaggattgtgatgaacgtgtaagaaacatgcctac |
38881265 |
T |
|
| Q |
117 |
acaaaaatatgatttgaattgtgcattttcttttagtttatgtgtaacagattgtgttaagcataagtccaaatgttgaaatctttttgttttctatttg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38881264 |
acaaaaatatgatttgaattgtgcattttcttttagtttatgtgtaacagattgtgttaagcataagtccaaatgttgaaatctttttgttttctatttg |
38881165 |
T |
|
| Q |
217 |
agcacttacaagactcaatatctttgtcactgacaatatttacgatatgaatttttcaaaatagcgtttcttgattcctttatgaatttcagcttgtggc |
316 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38881164 |
agcacttacaagactcaatatctttgtcagtgacaatatttacgatatgaatttttcaaaatagcgtttcttgattcctttatgaatttcagctagtggc |
38881065 |
T |
|
| Q |
317 |
attgagctcttctttcaaatttgtttcctctttactctttttggaagttaactctcttttatcttattgagattttccttggctattttatgataactac |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
38881064 |
attgagctcttctttcaaatttgtttcctctttactctttttggaagttaactctcttttattttattgagtttttccttggctattttatgataactac |
38880965 |
T |
|
| Q |
417 |
tttctttgtgattaa |
431 |
Q |
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|||||||||| |||| |
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| T |
38880964 |
tttctttgtggttaa |
38880950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 9e-22; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 28 - 157
Target Start/End: Complemental strand, 14630989 - 14630860
Alignment:
| Q |
28 |
taagcaagttgccaacatcgcgaccgagagatggaaaacgaaagagtttcggaaaaggattgtgatgaatgtgtaagaaacatgcctacacaaaaatatg |
127 |
Q |
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|||||||| |||||||| | |||||||||||||||| |||||| ||||||||| |||||| ||| ||||||||||||| ||||||||||||||| |
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| T |
14630989 |
taagcaagaagccaacattccaaccgagagatggaaaatcaaagagaaccggaaaagggttgtgaagaaaatgtaagaaacatgactacacaaaaatatg |
14630890 |
T |
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| Q |
128 |
atttgaattgtgcattttcttttagtttat |
157 |
Q |
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|||||||||| |||| ||||||| ||||| |
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| T |
14630889 |
atttgaattgcacattctcttttaatttat |
14630860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 14630823 - 14630748
Alignment:
| Q |
157 |
tgtgtaacagattgtgttaagcataagtccaaatgttgaaatctttttgttttctatttgagcacttacaagactc |
232 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||| |||||||||| |||||||||| ||| |||| |
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| T |
14630823 |
tgtgtaacagattgtgttaagcataagttcaaatgttaaaatcttcttgttttctacttgagcacttgcaatactc |
14630748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 15621125 - 15621208
Alignment:
| Q |
158 |
gtgtaacagattgtgttaagcataagtccaaatgttgaaatctttttgttttctatttgagcacttacaagactcaatatcttt |
241 |
Q |
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|||||||| | |||||||||||||||| |||| ||| |||||||||||||||||| | ||||| |||||| |||||||||||| |
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| T |
15621125 |
gtgtaacaaaatgtgttaagcataagttcaaacgttaaaatctttttgttttctactcgagcatttacaattctcaatatcttt |
15621208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 15644894 - 15644977
Alignment:
| Q |
158 |
gtgtaacagattgtgttaagcataagtccaaatgttgaaatctttttgttttctatttgagcacttacaagactcaatatcttt |
241 |
Q |
| |
|
|||||||| | |||||||||||||| | |||| || |||||||||||||||||| | ||||| |||||| |||||||||||| |
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| T |
15644894 |
gtgtaacaaaatgtgttaagcataaattcaaacattaaaatctttttgttttctactcgagcatttacaattctcaatatcttt |
15644977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 16641417 - 16641374
Alignment:
| Q |
157 |
tgtgtaacagattgtgttaagcataagtccaaatgttgaaatct |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
16641417 |
tgtgtaacagattgtgttaagcataagttcaaatgttaaaatct |
16641374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 16641562 - 16641475
Alignment:
| Q |
50 |
accgagagatggaaaacgaaagagtttcggaaaaggattgtgatgaatgtgtaagaaacatgcctacacaaaaatatgatttgaattg |
137 |
Q |
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|||||||||||||||| |||||| ||||||| || ||||| ||| ||||||||||||||||||| ||||||| ||||| ||||| |
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| T |
16641562 |
accgagagatggaaaatcaaagagaaccggaaaaagactgtgaagaaaatgtaagaaacatgcctacagaaaaatacgatttaaattg |
16641475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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