View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_high_79 (Length: 251)
Name: NF0925_high_79
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_high_79 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 13139219 - 13139453
Alignment:
| Q |
17 |
cggaggagatagaggttgaggacccatcagaattgcactttatccagtttagaataggagggtgccataaaacctctatgatttgaggggccctaggagg |
116 |
Q |
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| T |
13139219 |
cggaggagatagaggttgaggacccatcagaattgcactttatccagtttagaataggagggtgccataaaacctctatgatttgaggggccctaggagg |
13139318 |
T |
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| Q |
117 |
atgcaaagtgatgttgaannnnnnnatgatagtaaaatcatacatgctggaagaggaagttgcaagaatgttattaccagagaggttggtgctagaaata |
216 |
Q |
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| T |
13139319 |
atgcaaagtgatgttgaatttttttatgatagtaaaatcatacatgctggaagaggaagttgcaagagtattattaccagagaggttggtgctagaaata |
13139418 |
T |
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| Q |
217 |
agattagctatagaggttctccaatgaatggtttt |
251 |
Q |
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| T |
13139419 |
agattagctatagaggttctccaatgaatggtttt |
13139453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 24557919 - 24558153
Alignment:
| Q |
17 |
cggaggagatagaggttgaggacccatcagaattgcactttatccagtttagaataggagggtgccataaaacctctatgatttgaggggccctaggagg |
116 |
Q |
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| T |
24557919 |
cggaggagatagaggttgatgacccatcagaattgcactttatccagtttagaataggagggtgccataaaacctctatgatttgaggggccctaggagg |
24558018 |
T |
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| Q |
117 |
atgcaaagtgatgttgaannnnnnnatgatagtaaaatcatacatgctggaagaggaagttgcaagaatgttattaccagagaggttggtgctagaaata |
216 |
Q |
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| T |
24558019 |
atgcaaagtgatgttgaatttttttatgatagtaaaatcatacatgctggaagtggaagttgcaagagtattattaccagagaggttggtgctagaaata |
24558118 |
T |
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| Q |
217 |
agattagctatagaggttctccaatgaatggtttt |
251 |
Q |
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| T |
24558119 |
agattagctatagaggttctccaatgaatggtttt |
24558153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 14245694 - 14245773
Alignment:
| Q |
17 |
cggaggagatagaggttgaggacccatcagaattgcactttatccagtttagaataggagggtgccataaaacctctatg |
96 |
Q |
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| T |
14245694 |
cggaggagagagaggttgaggacccattagaattgcactttatccaatttagaataggaggatgccataaaacctctatg |
14245773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 13142206 - 13142258
Alignment:
| Q |
17 |
cggaggagatagaggttgaggacccatcagaattgcactttatccagtttaga |
69 |
Q |
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| T |
13142206 |
cggaggagagagaggttgaggacccatcagaattgcactttatccagtttaga |
13142258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 13142257 - 13142329
Alignment:
| Q |
101 |
gaggggccctaggaggatgcaaagtgatgttgaannnnnnnatgatagtaaaatcatacatgctggaagagga |
173 |
Q |
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| T |
13142257 |
gaggggccctaggaggatgcaaagtgatgttgaatttttttatgatagtaaaatcatacatgcaggaagagga |
13142329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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