View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_high_80 (Length: 250)
Name: NF0925_high_80
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_high_80 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 22 - 210
Target Start/End: Original strand, 44280787 - 44280975
Alignment:
| Q |
22 |
atcatcaattatggattagatgagggcgagaacgtcaaaagcttcattttgtcttcgttatcgacttcagtaccttttgcttggctgggtgccctttgag |
121 |
Q |
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| T |
44280787 |
atcatcaattatggattagatgagggtgagaacgtcaaaagcttcattttgtcttcgttatcgacttcagtaccttttgcttggctgggtgccctttgag |
44280886 |
T |
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| Q |
122 |
gagtacaagcaacatttttaataattgacgagtaaagatcaaactccgccttgagttttaggcaggaagcctgtatccacttctctgct |
210 |
Q |
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| T |
44280887 |
gagtacaagcaacatttttaataattgacgagtaaagatcaaactccgccttgagttttaggcaggaagcctgtatccacttctctgct |
44280975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 22 - 210
Target Start/End: Complemental strand, 44075193 - 44075005
Alignment:
| Q |
22 |
atcatcaattatggattagatgagggcgagaacgtcaaaagcttcattttgtcttcgttatcgacttcagtaccttttgcttggctgggtgccctttgag |
121 |
Q |
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||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44075193 |
atcatcaattacggattagatgaggccgagaacgtcaaaagcttcattttgtcttcgttatcgacttcagtaccttttgcttggtcgggtgccctttgag |
44075094 |
T |
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| Q |
122 |
gagtacaagcaacatttttaataattgacgagtaaagatcaaactccgccttgagttttaggcaggaagcctgtatccacttctctgct |
210 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44075093 |
cagtacaagcaacatttttaataattgaagaataaagatcaaactcagccttgagttttaggcaggaagcttgtatccacttctctgct |
44075005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 22 - 210
Target Start/End: Original strand, 44082354 - 44082544
Alignment:
| Q |
22 |
atcatcaattatggattagatgagggcgagaacgtcaaaagcttcattttgtcttcgttatcgacttcagtaccttttgcttggctgggtgccctttgag |
121 |
Q |
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||||||||||| ||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
44082354 |
atcatcaattacggattagatgaagttgagaacatcaaaagcttcattttgtcttcgttatcgacttcagtaccttttgcttggccgggttccctttgag |
44082453 |
T |
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| Q |
122 |
gagtacaagcaac-atttttaataattgacgagtaaagatcaaactccgccttg-agttttaggcaggaagcctgtatccacttctctgct |
210 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44082454 |
cagtacaagcaactatttttaataattgacgagtaaagatcaaactctgccttgtagttttaggcaggaagcctgtatccacttctctgct |
44082544 |
T |
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