View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_low_10 (Length: 626)
Name: NF0925_low_10
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_10 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 106; Significance: 1e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 44 - 190
Target Start/End: Complemental strand, 8087596 - 8087450
Alignment:
| Q |
44 |
aacaacgatacatacattctggattttattgatttctgaagnnnnnnnctcaaaaatgtaactatggacatgatatcaggtggtagtgaaaattgagaac |
143 |
Q |
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| T |
8087596 |
aacaacgatacatacattctggattttatttatttctgaagaaaaaaactcagaaatgtaactatggacatgatattaggtggttgtgaaaattgagaac |
8087497 |
T |
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| Q |
144 |
cttgagtaaatcaggaagcactctgagttggagcatcattgtcaatt |
190 |
Q |
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| T |
8087496 |
cttgagtaaatcaggaagcactctgagttggagcatcattatcaatt |
8087450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 213 - 241
Target Start/End: Original strand, 8084626 - 8084654
Alignment:
| Q |
213 |
aaaagtgaatgagaaagattaaattggat |
241 |
Q |
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| T |
8084626 |
aaaagtgaatgagaaagattaaattggat |
8084654 |
T |
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Target: scaffold0050 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 562 - 620
Target Start/End: Original strand, 8131 - 8189
Alignment:
| Q |
562 |
gtacataactaatgacagccgatttagaaataaaaatttcttccactcattcatctcac |
620 |
Q |
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| T |
8131 |
gtacataactaatgacaaccaatttagaaataaaaatttcttccactcattcatttcac |
8189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 414 - 480
Target Start/End: Original strand, 29500350 - 29500416
Alignment:
| Q |
414 |
gattattctacatctcatttccacttattttaaaatatattactgatattacttccatgtttatttt |
480 |
Q |
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| T |
29500350 |
gattattctatatctcatttccatttatgtgaaaataaattactgacataacttccatgtttatttt |
29500416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 46424154 - 46424196
Alignment:
| Q |
7 |
tatatttaatgaattcaccgcttcatcttaaaagagcaacaac |
49 |
Q |
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| T |
46424154 |
tatatttaatgaattcatcgcttcatcttaaaagagcaacaac |
46424196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 9452967 - 9453008
Alignment:
| Q |
7 |
tatatttaatgaattcaccgcttcatcttaaaagagcaacaa |
48 |
Q |
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| T |
9452967 |
tatatttaatgaatttaccgcttcatcttaaaagagcaacaa |
9453008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 492
Target Start/End: Complemental strand, 24779252 - 24779190
Alignment:
| Q |
431 |
tttccacttattttaaaatatattactgatattacttccatgttta-ttttcgttatttattt |
492 |
Q |
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| T |
24779252 |
tttccatttattttaaaataaactattgaaattacttccatgtttatttttcgttatatattt |
24779190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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