View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_low_107 (Length: 259)
Name: NF0925_low_107
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_107 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 15840719 - 15840854
Alignment:
| Q |
14 |
agaaaacaaaatccaaacatccatcgtccgctactcacaccaaagtcactccaaaaatccatcacccccgctaaagcccctaataacaactcctcgcctt |
113 |
Q |
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||||||||||||||||||||| ||||| || |||||| |||||||||||||||| ||| |||||||| |||| || ||||||||||||||||||| ||| |
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| T |
15840719 |
agaaaacaaaatccaaacatctatcgttcgttactcataccaaagtcactccaataatgcatcaccctcgctgaaacccctaataacaactcctcaactt |
15840818 |
T |
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| Q |
114 |
ctcatcgccacaaacaacacctgacatcatcaccac |
149 |
Q |
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| T |
15840819 |
cgcatcaccacaaacgacacctcccattatcaccac |
15840854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 28006882 - 28006766
Alignment:
| Q |
17 |
aaacaaaatccaaacatccatcgtccgctactcacaccaaagtcactccaaaaatccatcacccccgctaaagcccctaataacaactcctcgccttctc |
116 |
Q |
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| T |
28006882 |
aaacaaaattcaaacacctatcacccgctactcacaccaaagccactcaagaaaatcatcacacccgctcaaacccctaacaacaatacctcaccttctc |
28006783 |
T |
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| Q |
117 |
atcgccacaaacaacac |
133 |
Q |
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| T |
28006782 |
aacaccacaaacaacac |
28006766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 10191 - 10303
Alignment:
| Q |
17 |
aaacaaaatccaaacatccatcgtccgctactcacaccaaagtcactccaaaaatccatcacccccgct-aaagcccctaataacaactcctcgccttct |
115 |
Q |
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| T |
10191 |
aaacaaaatccaaacatctgtcgcccactactcacaccaaagccactccaaaaaatcatcacacccggtgaacccccctaacaacagcacctcaccttct |
10290 |
T |
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| Q |
116 |
catcgccacaaac |
128 |
Q |
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| T |
10291 |
catcaccaaaaac |
10303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 7424806 - 7424850
Alignment:
| Q |
105 |
cctcgccttctcatcgccacaaacaacacctgacatcatcaccac |
149 |
Q |
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| T |
7424806 |
cctcgccttctcatcaccacaaacaacacctcacatcatcaccac |
7424850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 12220879 - 12220821
Alignment:
| Q |
91 |
ccctaataacaactcctcgccttctcatcgccacaaacaacacctgacatcatcaccac |
149 |
Q |
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| T |
12220879 |
ccctaacaacagctccccgccttctcatcaccacaaacaacacctcacctcatcaccac |
12220821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 15075091 - 15075140
Alignment:
| Q |
17 |
aaacaaaatccaaacatccatcgtccgctactcacaccaaagtcactcca |
66 |
Q |
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| T |
15075091 |
aaacaaaattcaaacagctatcgtccgctactcacaccaaagccactcca |
15075140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 15065795 - 15065843
Alignment:
| Q |
18 |
aacaaaatccaaacatccatcgtccgctactcacaccaaagtcactcca |
66 |
Q |
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| T |
15065795 |
aacaaaattcaaacagttatcgtccgctactcacaccaaagtcactcca |
15065843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 26475043 - 26474994
Alignment:
| Q |
98 |
aacaactcctcgccttctcatcgccacaaacaacacctgacatcatcacc |
147 |
Q |
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| T |
26475043 |
aacaacacctcgtcttctcatcaccacaaacaacacctcacctcatcacc |
26474994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 4554377 - 4554420
Alignment:
| Q |
15 |
gaaaacaaaatcca--aacatccatcgtccgctactcacaccaa |
56 |
Q |
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| T |
4554377 |
gaaaacaaaatccataaacatccatcgtccgctactcaccccaa |
4554420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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