View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_low_11 (Length: 621)
Name: NF0925_low_11
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 48 - 551
Target Start/End: Complemental strand, 37433211 - 37432708
Alignment:
| Q |
48 |
gctagataagaggagagtatgttgagaaatccttaactctggatggactcgtaattcggattaggtctagcatagatcttggctaagtttgaaagaaact |
147 |
Q |
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| T |
37433211 |
gctagataagaggagagtatgttgagaaatccttaactctggatggactcgtaattcggattaggtctaacatagatcttggataagtttgaaagaaact |
37433112 |
T |
|
| Q |
148 |
ttatatcattttt-cttaatatatttattttaatcatctattcgaaaccacatagtggaggaactagaaccctaacttaggggttcaaacttttgaattc |
246 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
37433111 |
ttatatcattttttcttaatatatttattttaatcatctattcgaaaccacatagtggaggaactagaacgctaatttaggggttcaaacttttgaattc |
37433012 |
T |
|
| Q |
247 |
ttagatcttttgaactatatctaagggagttcaaaacgcaaaatatacaacggtctatttgcc-nnnnnnncaaagttcaaggtctgccctgaaaccaca |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| | || |||||||||||| |
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| T |
37433011 |
ttagatcttttgaactatatctaagggagttcaaaacgcaaaatatacaaaggtctatttgccttttttttcaaagttcaagatgtgtcctgaaaccaca |
37432912 |
T |
|
| Q |
346 |
tatctcctcaaactcaattatgctcgatgtaagtgtctttgatagcaaataactacaatttattaatgttgcgagagattagtctcttttacaaaaataa |
445 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||| |||||||| |
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| T |
37432911 |
tgcctcctcaaactcaattatgctcgatgtaagtgtctttgatagcaaataactacgatttgttaatgttgtgagagattagtctcttttataaaaataa |
37432812 |
T |
|
| Q |
446 |
ccgaccaatgtgagtttagacttctatctcttattccnnnnnnnnnnnngctagaatccaagaggaattgaagaagaaagtatggactttacctgctcct |
545 |
Q |
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| T |
37432811 |
ccgacgaatgtaagtttagacttc--tctcttattccttttttctttttgctagaatccaagaggaattgaagaagaaagtatggactttacctgctcct |
37432714 |
T |
|
| Q |
546 |
atgcta |
551 |
Q |
| |
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|||||| |
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| T |
37432713 |
atgcta |
37432708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 9452967 - 9453007
Alignment:
| Q |
7 |
tatatttaatgaattcaccgcttcatcttaaaagagcaaca |
47 |
Q |
| |
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| T |
9452967 |
tatatttaatgaatttaccgcttcatcttaaaagagcaaca |
9453007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 46424154 - 46424194
Alignment:
| Q |
7 |
tatatttaatgaattcaccgcttcatcttaaaagagcaaca |
47 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
46424154 |
tatatttaatgaattcatcgcttcatcttaaaagagcaaca |
46424194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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