View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0925_low_112 (Length: 251)
Name: NF0925_low_112
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_112 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 110 - 238
Target Start/End: Original strand, 1006886 - 1007014
Alignment:
| Q |
110 |
acatttaactatattaaagaagtttgaaattcaaaaagtaaaacgcaataaatatgttgtgcatgagattcctacaagttgaattgaaagagaaagtgat |
209 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
1006886 |
acatttaactagattaaagaagtttgaaattcaaaaagtaaaacgcaataaatatgttgtgcatgcgattcctacaagttgaattgaaagagaaacagat |
1006985 |
T |
|
| Q |
210 |
atgaaaacaaaaattgaaaaggaatagaa |
238 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1006986 |
atgaaaacaaaaattgaaaaggaatagaa |
1007014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 1006811 - 1006890
Alignment:
| Q |
1 |
cattttagagtattttgttgtaactaattaatttatttgataggttagtacaacataaatgcaattgcaatacaaacatt |
80 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1006811 |
cattttagagtattttgttgtaactaattaattaatttgatagattagtacaacataaatgcaattgcaatacaaacatt |
1006890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 633 times since January 2019
Visitors: 6705