View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0925_low_12 (Length: 619)

Name: NF0925_low_12
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0925_low_12
NF0925_low_12
[»] chr3 (26 HSPs)
chr3 (169-543)||(183125-183500)
chr3 (265-533)||(48161882-48162151)
chr3 (267-543)||(55146946-55147223)
chr3 (265-533)||(45031863-45032124)
chr3 (420-533)||(18946091-18946204)
chr3 (267-543)||(30716258-30716536)
chr3 (4-170)||(48164845-48165010)
chr3 (4-165)||(45034717-45034878)
chr3 (17-170)||(177751-177905)
chr3 (4-170)||(18942914-18943082)
chr3 (265-373)||(18945635-18945744)
chr3 (4-170)||(18911882-18912050)
chr3 (96-170)||(52561128-52561202)
chr3 (169-243)||(18945504-18945578)
chr3 (86-170)||(10818-10902)
chr3 (169-229)||(45032178-45032238)
chr3 (169-229)||(48162204-48162264)
chr3 (17-73)||(23585209-23585265)
chr3 (17-73)||(23600032-23600088)
chr3 (317-373)||(4950375-4950431)
chr3 (317-373)||(53561961-53562017)
chr3 (389-467)||(18895610-18895688)
chr3 (17-63)||(52561248-52561294)
chr3 (107-165)||(55150880-55150938)
chr3 (87-165)||(13825446-13825524)
chr3 (317-362)||(7833810-7833855)
[»] chr7 (23 HSPs)
chr7 (167-543)||(1804375-1804744)
chr7 (237-543)||(41958100-41958410)
chr7 (265-533)||(46528897-46529165)
chr7 (4-165)||(46526333-46526494)
chr7 (4-170)||(42014175-42014343)
chr7 (389-543)||(13952999-13953153)
chr7 (4-164)||(6272768-6272931)
chr7 (17-170)||(41964370-41964532)
chr7 (169-243)||(46528765-46528839)
chr7 (407-543)||(28510321-28510457)
chr7 (405-543)||(3938841-3938979)
chr7 (86-158)||(45075571-45075644)
chr7 (317-373)||(11409319-11409375)
chr7 (317-477)||(45414710-45414870)
chr7 (317-533)||(17733530-17733747)
chr7 (17-63)||(45415235-45415281)
chr7 (169-206)||(34195421-34195458)
chr7 (389-477)||(31592799-31592887)
chr7 (267-306)||(3939091-3939130)
chr7 (267-306)||(17733372-17733411)
chr7 (327-373)||(13952930-13952976)
chr7 (167-209)||(41958412-41958454)
chr7 (317-373)||(31592903-31592959)
[»] chr4 (11 HSPs)
chr4 (178-545)||(39390218-39390586)
chr4 (169-373)||(31302816-31303023)
chr4 (336-533)||(55740931-55741128)
chr4 (17-170)||(54602476-54602632)
chr4 (86-170)||(39388810-39388894)
chr4 (389-533)||(54603731-54603876)
chr4 (114-170)||(12024911-12024967)
chr4 (317-373)||(12027811-12027867)
chr4 (317-373)||(54603655-54603711)
chr4 (267-306)||(54603503-54603542)
chr4 (188-257)||(12027667-12027736)
[»] chr5 (13 HSPs)
chr5 (166-543)||(19870851-19871229)
chr5 (265-533)||(9041806-9042075)
chr5 (4-170)||(10825630-10825797)
chr5 (198-342)||(23062956-23063102)
chr5 (4-170)||(7262975-7263151)
chr5 (86-170)||(23067217-23067301)
chr5 (86-170)||(19876620-19876704)
chr5 (565-613)||(35956620-35956668)
chr5 (317-441)||(42449471-42449598)
chr5 (317-441)||(10826522-10826644)
chr5 (17-63)||(23067336-23067382)
chr5 (169-206)||(9041703-9041740)
chr5 (317-467)||(23062654-23062800)
[»] chr2 (18 HSPs)
chr2 (169-543)||(40614050-40614424)
chr2 (170-342)||(4172090-4172264)
chr2 (4-170)||(31501048-31501219)
chr2 (317-533)||(21831429-21831649)
chr2 (4-158)||(19508562-19508718)
chr2 (169-306)||(26171996-26172131)
chr2 (4-170)||(26393790-26393964)
chr2 (317-498)||(29899540-29899708)
chr2 (86-165)||(40612850-40612929)
chr2 (317-467)||(31508915-31509066)
chr2 (96-170)||(4174815-4174889)
chr2 (317-359)||(34457519-34457561)
chr2 (96-165)||(15738224-15738293)
chr2 (86-170)||(29902289-29902373)
chr2 (124-164)||(34458560-34458600)
chr2 (4-62)||(2119760-2119818)
chr2 (17-63)||(15738124-15738170)
chr2 (124-161)||(2119889-2119926)
[»] chr6 (8 HSPs)
chr6 (174-542)||(5614206-5614577)
chr6 (169-543)||(19273015-19273394)
chr6 (264-533)||(1259471-1259741)
chr6 (17-165)||(5620363-5620514)
chr6 (17-170)||(19268673-19268837)
chr6 (4-165)||(33523480-33523650)
chr6 (17-63)||(2946286-2946332)
chr6 (275-304)||(1259439-1259468)
[»] chr8 (15 HSPs)
chr8 (167-452)||(8318914-8319202)
chr8 (17-165)||(44115848-44115997)
chr8 (4-170)||(41269899-41270067)
chr8 (17-170)||(42095687-42095849)
chr8 (421-498)||(23718272-23718349)
chr8 (86-165)||(8317040-8317119)
chr8 (317-438)||(44118878-44118999)
chr8 (390-477)||(20495067-20495154)
chr8 (406-498)||(21551296-21551388)
chr8 (406-498)||(21552342-21552434)
chr8 (96-165)||(18701179-18701248)
chr8 (317-373)||(20494994-20495050)
chr8 (267-306)||(20494848-20494887)
chr8 (267-306)||(44118735-44118774)
chr8 (17-63)||(18701080-18701126)
[»] chr1 (23 HSPs)
chr1 (4-170)||(31387568-31387733)
chr1 (13-170)||(42463548-42463705)
chr1 (4-170)||(4911852-4912018)
chr1 (169-306)||(42057775-42057912)
chr1 (4-170)||(27105940-27106108)
chr1 (4-165)||(46192209-46192370)
chr1 (86-163)||(15291587-15291664)
chr1 (317-477)||(42464798-42464958)
chr1 (317-467)||(15292252-15292401)
chr1 (317-477)||(42058098-42058257)
chr1 (86-165)||(18242998-18243077)
chr1 (17-63)||(15291508-15291554)
chr1 (188-257)||(46200497-46200566)
chr1 (317-373)||(13706656-13706712)
chr1 (317-373)||(18240009-18240065)
chr1 (317-373)||(46200638-46200694)
chr1 (389-476)||(18239906-18239993)
chr1 (267-306)||(18240173-18240212)
chr1 (267-306)||(27108741-27108780)
chr1 (267-306)||(42464661-42464700)
chr1 (126-165)||(50914923-50914962)
chr1 (267-305)||(31386045-31386083)
chr1 (188-257)||(13706783-13706852)
[»] scaffold0020 (1 HSPs)
scaffold0020 (404-519)||(140466-140581)
[»] scaffold0916 (2 HSPs)
scaffold0916 (389-533)||(623-766)
scaffold0916 (317-373)||(786-842)
[»] scaffold0013 (1 HSPs)
scaffold0013 (424-533)||(86482-86591)
[»] scaffold1043 (2 HSPs)
scaffold1043 (86-170)||(2965-3049)
scaffold1043 (30-63)||(2890-2923)
[»] scaffold0184 (1 HSPs)
scaffold0184 (389-466)||(28180-28257)
[»] scaffold0078 (1 HSPs)
scaffold0078 (389-466)||(44587-44664)
[»] scaffold0688 (1 HSPs)
scaffold0688 (86-165)||(5473-5552)
[»] scaffold1813 (1 HSPs)
scaffold1813 (317-373)||(331-387)


Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 169 - 543
Target Start/End: Original strand, 183125 - 183500
Alignment:
Q  169 catagcataaaaatccaagcaagtaacatgtaacatatcaataattaaacttaggcattcattcaaatccacacttacaatcattcaacaacttag-cat 267  Q
    |||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||  ||||||||||||| |||||||||||||||||| |||    
T  183125 catagcataaaaatccaaccaagtaacatgtaacatatcaaaaataaaacttaggcattcatataaatccacacttagaatcattcaacaacttaggcat 183224  T
Q  268 ttatataacataccacattatgtcattcttcaaacttgcnnnnnnnnttaaaa-tccaagcttataataattataacatatatactttataaaattgaag 366  Q
    ||||||||||||||||||||||||||||||||||||||         |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  183225 ttatataacataccacattatgtcattcttcaaacttgtcaaaaaatttaaaaatccaagcttataataattataacatatatactttataaaattgaag 183324  T
Q  367 atatttgnnnnnnnnttacacgaaaaaagcaagatctcctcacttatgcattatatcaaacaccttatgtgcattctaaattaggagcataattagtgtt 466  Q
    ||||||         |||||| |||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  183325 atatttaaaaaataattacacaaaaaaa-caagatttcctcacttatgcattttatcaaacaccttatgtgcattctaaattaagagcataattagtgtt 183423  T
Q  467 atttgaacatctaaagggctacattgtacctacattgtctctaaacaacaattccagcataaacaatactttaaaac 543  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  183424 atttgaacatctaaagggctacattgtacatacattgtctctaaacaacaattccagcataaacaatactttaaaac 183500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 265 - 533
Target Start/End: Complemental strand, 48162151 - 48161882
Alignment:
Q  265 catttatataacataccacattatgtcattcttcaaacttgcnnnnnnnnttaaaa-tccaagcttataataattataacatatatactttataaaattg 363  Q
    ||||||||||||||||||||||||||||||||||||||||||        |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48162151 catttatataacataccacattatgtcattcttcaaacttgccaaaaaatttaaaaatccaagcttataataattataacatatatactttataaaattg 48162052  T
Q  364 aagatatttgnnnnnnnnttacacgaaaaaagcaagatctcctcacttatgcattatatcaaacaccttatgtgcattctaaattaggagcataattagt 463  Q
    ||||||||||        |||||| ||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48162051 aagatatttgaaaaaaaattacacaaaaaaggcaagatatcctcacttatgcattttatcaaacaccttatgtgcattctaaattaggagcataattagt 48161952  T
Q  464 gttatttgaacatctaaagggctacattgtacctacattgtctctaaacaacaattccagcataaacaat 533  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  48161951 gctatttgaacatctaaagggctacattgtacctacattgtctctaaacaacaattacagcataaacaat 48161882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 267 - 543
Target Start/End: Complemental strand, 55147223 - 55146946
Alignment:
Q  267 tttatataacataccacattatgtcattcttcaaacttgcnnnnnnnntta-aaatccaagcttataataattataacatatatactttataaaattgaa 365  Q
    ||||| ||||||||||||||||||||||| ||||||||||        ||| |||||||||  ||||||||||| | ||||||||| |||||||||||||    
T  55147223 tttatgtaacataccacattatgtcattcatcaaacttgccaaaaaatttataaatccaagtctataataattacagcatatatacattataaaattgaa 55147124  T
Q  366 gatatttgnnnnnnnnttacacgaaaaaagcaagatctcctcacttatgcattatatcaaacaccttatgtgcattctaaattaggagcataattagtgt 465  Q
     |||||||        |||||| |||||||||| || | |||||||| |||||  |||||||||||||||||| |||||||||||||||| || ||||||    
T  55147123 catatttgaaaaaaaattacacaaaaaaagcaacattttctcacttaggcatttcatcaaacaccttatgtgcgttctaaattaggagcacaactagtgt 55147024  T
Q  466 tatttgaacatctaaagggctacattgtacctacattgtctctaaacaacaattccagcataaacaatactttaaaac 543  Q
    |||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||    
T  55147023 tatttgaacatctaaagggctacattgtacctacatttacactaaacaacaattccagcataaacaatactttaaaac 55146946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 265 - 533
Target Start/End: Complemental strand, 45032124 - 45031863
Alignment:
Q  265 catttatataacataccacattatgtcattcttcaaacttgcnnnnnnnnttaaaa-tccaagcttataataattataacatatatactttataaaattg 363  Q
    ||||||||||||||||||||||||||||||||||||||||||        |||||| || ||||||||||||||||||||||||||||||||||||||||    
T  45032124 catttatataacataccacattatgtcattcttcaaacttgccaaaaaaattaaaaatcgaagcttataataattataacatatatactttataaaattg 45032025  T
Q  364 aagatatttgnnnnnnnn-ttacacgaaaaaagcaagatctcctcacttatgcattatatcaaacaccttatgtgcattctaaattaggagcataattag 462  Q
    ||||||||||         |||||| ||||||| ||||| ||||||||||||| || ||||||| ||         |||||||||||||||||| |||||    
T  45032024 aagatatttgaataaaaaattacacaaaaaaagaaagatttcctcacttatgctttttatcaaatac---------attctaaattaggagcatgattag 45031934  T
Q  463 tgttatttgaacatctaaagggctacattgtacctacattgtctctaaacaacaattccagcataaacaat 533  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||| |||||||| || ||||||||||    
T  45031933 tgttatttagacatctaaagagctacattgtacctacattgtctctaagcaacaattacaacataaacaat 45031863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 420 - 533
Target Start/End: Original strand, 18946091 - 18946204
Alignment:
Q  420 tatcaaacaccttatgtgcattctaaattaggagcataattagtgttatttgaacatctaaagggctacattgtacctacattgtctctaaacaacaatt 519  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18946091 tatcaaacaccttatgagcattctaaattaggagcataattagtgttatttgaacatctaaagggctacattgtacctacattgtctctaaacaacaatt 18946190  T
Q  520 ccagcataaacaat 533  Q
     || ||||||||||    
T  18946191 acatcataaacaat 18946204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 267 - 543
Target Start/End: Complemental strand, 30716536 - 30716258
Alignment:
Q  267 tttatataacataccacattatgtcattcttcaaacttgcnnnnnnnntta-aaatccaagcttataataattataacatatatactttataaaattgaa 365  Q
    ||||| ||| |||||| |||||||||||| ||||||||||        ||| |||||||||  ||||||||||| | ||||||||| |||||||||||||    
T  30716536 tttatgtaatataccatattatgtcattcatcaaacttgccaaaaaatttataaatccaagtctataataattacagcatatatacattataaaattgaa 30716437  T
Q  366 gatatttgnnnnnnnnttacacgaaaaaagcaagatctcctcacttatgcattatatcaaacaccttatgtgcattctaaattaggagcataattagtgt 465  Q
     |||||||        |||||| |||||||||| || | |||||||| |||||  ||||||||||||||||||| ||||||||||||||| |  ||||||    
T  30716436 catatttgaaaaaaaattacac-aaaaaagcaacattttctcacttaggcatttcatcaaacaccttatgtgcactctaaattaggagcacagctagtgt 30716338  T
Q  466 tatttgaacatctaaagggctacattgtacctacattgtctctaaacaaca--attccagcataaacaatactttaaaac 543  Q
    |||||||||||||||||||||||||||||||||||||  | ||||||||||  | | ||||||||| |||||||||||||    
T  30716337 tatttgaacatctaaagggctacattgtacctacatttacactaaacaacaacaattcagcataaataatactttaaaac 30716258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 48165010 - 48164845
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaatatgtcataattatacatcacagtcaaaaagtacatnnnnnnngcctaatcacaatcaacc 103  Q
    |||||| | ||| ||||| |||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||        |||||||| ||||||||    
T  48165010 atgtcggaaaatgtcatacaaataccaaaatgtacggaacatgtcataattat-catcacagtaaaaaagtacataaaaaaaccctaatcataatcaacc 48164912  T
Q  104 ctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggcaacca 170  Q
    || |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  48164911 ctgctgcctagcatgcctcgaccccctgcgccgcctgacaatctgatacgtaagggcagggcgacca 48164845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 4 - 165
Target Start/End: Complemental strand, 45034878 - 45034717
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaatatgtcataattatacatcacagtcaaaaagtacatnnnnnnngcctaatcacaatcaacc 103  Q
    |||||| | ||| ||||| |||||||||||| ||||||| ||||||||||||||||||| ||| |||||||||||        |||||||| ||||||||    
T  45034878 atgtcggaaaatgtcatacaaataccaaaatatacggaacatgtcataattatacatcagagtaaaaaagtacataaaaaaaccctaatcataatcaacc 45034779  T
Q  104 ctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggc 165  Q
    || |||||||||||| ||||||||||||||||||||| |||| |||||||||||||| ||||    
T  45034778 ctgctgcctagcatgcctcggccccctgcgccgcctggcaatttgatacgtaagggcggggc 45034717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 177751 - 177905
Alignment:
Q  17 tcatagaaataccaaaatgtacggaatatgtcataattatacatcacagtcaaaaagtacatnnnnnnn-gcctaatcacaatcaaccctactgcctagc 115  Q
    |||||||||||||||||||||||||| ||||||||||||||| | ||| |||||||||||||        | ||||||| ||||||||||  ||||||||    
T  177751 tcatagaaataccaaaatgtacggaacatgtcataattatactttacattcaaaaagtacataaaaaaaagtctaatcataatcaaccctgttgcctagc 177850  T
Q  116 atgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggcaacca 170  Q
    ||| |||||||||||  |||||||| |||||||||||||||||||||||| ||||    
T  177851 atgcctcggccccctatgccgcctggcaatctgatacgtaagggcagggcgacca 177905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 18942914 - 18943082
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaatatgtcataattatacatcacagtcaaaaagtacatnnnnnnng--cctaatcacaatcaa 101  Q
    |||||| | ||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||| |||||||||          |||||||| ||||||    
T  18942914 atgtcggaaaatgtcatacaaataccaaaatgtacggaacatgtcataattataaatcacagtcacaaagtacataaaaaaaaaccctaatcataatcaa 18943013  T
Q  102 ccctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggcaacca 170  Q
    |||| |||||||||||| |||| |||||||| ||||||  |||| ||||||||||||||||||| ||||    
T  18943014 ccctgctgcctagcatgcctcgaccccctgcaccgcctcgcaatttgatacgtaagggcagggcgacca 18943082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 265 - 373
Target Start/End: Original strand, 18945635 - 18945744
Alignment:
Q  265 catttatataacataccacattatgtcattcttcaaacttgcnnnnnnnnttaaaa-tccaagcttataataattataacatatatactttataaaattg 363  Q
    ||||||||||||||||||||||||||||||||||||||||||        |||||| |  |||||||||||||||||||| |||||||||||||||||||    
T  18945635 catttatataacataccacattatgtcattcttcaaacttgcgaaaaaatttaaaaatttaagcttataataattataacgtatatactttataaaattg 18945734  T
Q  364 aagatatttg 373  Q
    ||||||||||    
T  18945735 aagatatttg 18945744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 18912050 - 18911882
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaatatgtcataattatacatcacagtcaaaaagtacatnnnnnnng---cctaatcacaatca 100  Q
    |||||| | ||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||           |||||||| |||||    
T  18912050 atgtcggaaaatgtcatacaaataccaaaatgtacggaacatgtcataattatacatcacagt-aaaaagtgcataaaaaaaaaaacctaatcataatca 18911952  T
Q  101 accctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggcaacca 170  Q
    ||| | ||||||||||||  | |||||||||||||||||| |||||||||| ||||||||||||| ||||    
T  18911951 accttgctgcctagcatgctttggccccctgcgccgcctggcaatctgatatgtaagggcagggcgacca 18911882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 52561202 - 52561128
Alignment:
Q  96 aatcaaccctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggcaacca 170  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  52561202 aatcaaccctactgcctagcatgcctcggccccctgcgccgcctgacaatctgttacgtaagggcagggcgacca 52561128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 18945504 - 18945578
Alignment:
Q  169 catagcataaaaatccaagcaagtaacatgtaacatatcaataattaaacttaggcattcattcaaatccacact 243  Q
    |||||||||||||||||| ||||||||||||||||||| || ||  |||||||||||||||| ||||||||||||    
T  18945504 catagcataaaaatccaaccaagtaacatgtaacatataaaaaaagaaacttaggcattcatacaaatccacact 18945578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 86 - 170
Target Start/End: Complemental strand, 10902 - 10818
Alignment:
Q  86 gcctaatcacaatcaaccctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggcaacca 170  Q
    ||||||| | ||||| |||| ||||||| | || ||| |||||||||||||||||||||||||||| ||||||||||||| ||||    
T  10902 gcctaataataatcagccctgctgcctaccctgcctctgccccctgcgccgcctgacaatctgataagtaagggcagggcgacca 10818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 45032238 - 45032178
Alignment:
Q  169 catagcataaaaatccaagcaagtaacatgtaacatatcaataattaaacttaggcattca 229  Q
    |||||||||||||||||| ||||||||||||||||||| || ||| |||||||||||||||    
T  45032238 catagcataaaaatccaaccaagtaacatgtaacatataaaaaatgaaacttaggcattca 45032178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 48162264 - 48162204
Alignment:
Q  169 catagcataaaaatccaagcaagtaacatgtaacatatcaataattaaacttaggcattca 229  Q
    |||||||||||||||||| ||||||||||||||||||| || ||| |||||||||||||||    
T  48162264 catagcataaaaatccaaccaagtaacatgtaacatataaaaaatgaaacttaggcattca 48162204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 23585265 - 23585209
Alignment:
Q  17 tcatagaaataccaaaatgtacggaatatgtcataattatacatcacagtcaaaaag 73  Q
    |||||||||||| ||||||||||||| |||||||| |||||||||||| ||||||||    
T  23585265 tcatagaaatacaaaaatgtacggaacatgtcatagttatacatcacaatcaaaaag 23585209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 23600088 - 23600032
Alignment:
Q  17 tcatagaaataccaaaatgtacggaatatgtcataattatacatcacagtcaaaaag 73  Q
    |||||||||||| ||||||||||||| |||||||| |||||||||||| ||||||||    
T  23600088 tcatagaaatacaaaaatgtacggaacatgtcatagttatacatcacaatcaaaaag 23600032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 373
Target Start/End: Original strand, 4950375 - 4950431
Alignment:
Q  317 aaaatccaagcttataataattataacatatatactttataaaattgaagatatttg 373  Q
    ||||||||| ||||||||| ||||||||||||||| |||||||||| || |||||||    
T  4950375 aaaatccaaccttataatatttataacatatatacattataaaatttaacatatttg 4950431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 373
Target Start/End: Original strand, 53561961 - 53562017
Alignment:
Q  317 aaaatccaagcttataataattataacatatatactttataaaattgaagatatttg 373  Q
    ||||||||| ||||||||||||||||||||||||| |||||| ||| || |||||||    
T  53561961 aaaatccaaccttataataattataacatatatacattataagatttaacatatttg 53562017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 467
Target Start/End: Complemental strand, 18895688 - 18895610
Alignment:
Q  389 aaaaaagcaagatctcctcacttatgcattatatcaaacaccttatgtgcattctaaattaggagcataattagtgtta 467  Q
    ||||||||||||| | |||||||| |||||  |||||||||||||||||||||  ||| ||  |||| |||||||||||    
T  18895688 aaaaaagcaagattttctcacttaggcatttcatcaaacaccttatgtgcatttcaaaatactagcacaattagtgtta 18895610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 52561294 - 52561248
Alignment:
Q  17 tcatagaaataccaaaatgtacggaatatgtcataattatacatcac 63  Q
    |||||||||||  ||||||||||||| ||||||||||||||||||||    
T  52561294 tcatagaaataagaaaatgtacggaacatgtcataattatacatcac 52561248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 165
Target Start/End: Complemental strand, 55150938 - 55150880
Alignment:
Q  107 ctgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggc 165  Q
    ||||||| | || ||| ||||||||||||||||| |||||||||| |||||||||||||    
T  55150938 ctgcctaccctgcctctgccccctgcgccgcctggcaatctgataagtaagggcagggc 55150880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 87 - 165
Target Start/End: Original strand, 13825446 - 13825524
Alignment:
Q  87 cctaatcacaatcaaccctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggc 165  Q
    |||||| | ||||||||||||||||||   || ||  ||||||||||| ||||| ||||| ||||| ||||||||||||    
T  13825446 cctaatgataatcaaccctactgcctatggtgcctatgccccctgcgctgcctggcaatccgatacataagggcagggc 13825524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 362
Target Start/End: Complemental strand, 7833855 - 7833810
Alignment:
Q  317 aaaatccaagcttataataattataacatatatactttataaaatt 362  Q
    |||||||||  ||||||| |||||||||||||||| ||||||||||    
T  7833855 aaaatccaaatttataatcattataacatatatacattataaaatt 7833810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 167 - 543
Target Start/End: Original strand, 1804375 - 1804744
Alignment:
Q  167 accatagcataaaaatccaagcaagtaacatgtaacatatcaataattaaacttaggcattcattcaaatccacacttacaatcattcaacaacttag-c 265  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  1804375 accatagcataaaaattcaagcaagtaacatgtaacatatcaataattaaacttaggcattcatacaaatccacacttacaatcattcaacaacttagac 1804474  T
Q  266 atttatataacataccacattatgtcattcttcaaacttgcnnnnnnnntt--aaaatccaagcttataataattataacatatatactttataaaattg 363  Q
    ||||||||||| ||||||||||| | |||||||||||||||        ||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  1804475 atttatataacgtaccacattatattattcttcaaacttgccaaaaaatttaaaaaatccaagcttataataattataacatatatactttataaaattg 1804574  T
Q  364 aagatatttgnnnnnnnnttacacgaaaaaagcaagatctcctcacttatgcattatatcaaacaccttatgtgcattctaaattaggagcataattagt 463  Q
    ||||||||||        |||||| ||||||||||||| ||||||||         |||||||||| |||||||||||||||||||||||||||||||||    
T  1804575 aagatatttg-gaaaaaattacacaaaaaaagcaagatttcctcact---------tatcaaacactttatgtgcattctaaattaggagcataattagt 1804664  T
Q  464 gttatttgaacatctaaagggctacattgtacctacattgtctctaaacaacaattccagcataaacaatactttaaaac 543  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  1804665 gttatttgaacatctaaagggctatattgtacctacattgtctctaaacaacaattccagcataaatgatactttaaaac 1804744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 237 - 543
Target Start/End: Complemental strand, 41958410 - 41958100
Alignment:
Q  237 ccacacttacaatcattcaacaacttag-catttatataacataccacattatgtcattcttcaaacttgcnnnnnnnnttaaaa-tccaagcttataat 334  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||        |||||| ||||||||||||||    
T  41958410 ccacacttacaatcattcaacaacttaggcatttatataacataccacattatgtcattcttcaaacttgccaaaaaatttaaaaatccaagcttataat 41958311  T
Q  335 aattataacatatatactttataaaattgaagatatttgnnnnnnnn--ttacacgaaaaaagcaagatctcctcacttatgcattatatcaaacacctt 432  Q
    |||||||||||||||||||||||||||||||||||||||          |||||| ||||||||||||| | |||||||||||||| ||||||||| |||    
T  41958310 aattataacatatatactttataaaattgaagatatttgaaaaaaaaaattacacaaaaaaagcaagatttactcacttatgcattttatcaaacaactt 41958211  T
Q  433 atgtgcattctaaattaggagcataattagtgttatttgaacatctaaagggctacattgtacctacattgtctctaaacaacaattccagcataaacaa 532  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41958210 atgtgcattctaaattaggagcataattagtgttatttgaacatctgaagggctacattgtacctacattgtctctaaacaacaattccagcataaacaa 41958111  T
Q  533 tactttaaaac 543  Q
    |||||||||||    
T  41958110 tactttaaaac 41958100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 265 - 533
Target Start/End: Original strand, 46528897 - 46529165
Alignment:
Q  265 catttatataacataccacattatgtcattcttcaaacttgcnnnnnnnnttaaaa-tccaagcttataataattataacatatatactttataaaattg 363  Q
    ||||||||||||||||||||||||||||||||||||||||||        |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  46528897 catttatataacataccacattatgtcattcttcaaacttgccaaaaaatttaaaaatccaagcttataataattataacatatatactttataaaattg 46528996  T
Q  364 aagatatttgnnnnnnnnttacacgaaaaaagcaagatctcctcacttatgcattatatcaaacaccttatgtgcattctaaattaggagcataattagt 463  Q
    ||||||||||        |||||| ||||||| ||||| | |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  46528997 aagatatttgaaaataa-ttacacaaaaaaagtaagattttctcacttatgcattttatcaaacaccttatgagcattctaaattaggagcataattagt 46529095  T
Q  464 gttatttgaacatctaaagggctacattgtacctacattgtctctaaacaacaattccagcataaacaat 533  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  46529096 gttatttgaacatctaaagggctacattgtacctacattgtctctaaacaacaattacaacataaacaat 46529165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 4 - 165
Target Start/End: Original strand, 46526333 - 46526494
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaatatgtcataattatacatcacagtcaaaaagtacatnnnnnnngcctaatcacaatcaacc 103  Q
    |||||| | ||| ||||| ||||||||||||||| |||| ||||||||||||||| ||||||| |||||||||||        |||||||| ||||||||    
T  46526333 atgtcggaaaatgtcatacaaataccaaaatgtaaggaacatgtcataattatacgtcacagtaaaaaagtacataaaaaaaccctaatcataatcaacc 46526432  T
Q  104 ctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggc 165  Q
    || |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  46526433 ctgctgcctagcatgcctcggccccctgcgccgcctggcaatctgatacgtaagggcagggc 46526494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 42014343 - 42014175
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaatatgtcataattatacatcacagtcaaaaagtacat--nnnnnnngcctaatcacaatcaa 101  Q
    |||||| | ||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||          |||||||| ||||||    
T  42014343 atgtcggaaaatgtcatacaaataccaaaatgtacggaatatgtcataattatacataacagtaaaaaagtacataaaaaaaaaccctaatcataatcaa 42014244  T
Q  102 ccctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggcaacca 170  Q
    | || |||||||||||| ||||||||||||| ||||||  |||||||||||||||||| ||||| ||||    
T  42014243 ctctgctgcctagcatgcctcggccccctgctccgcctagcaatctgatacgtaagggtagggcgacca 42014175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 389 - 543
Target Start/End: Original strand, 13952999 - 13953153
Alignment:
Q  389 aaaaaagcaagatctcctcacttatgcattatatcaaacaccttatgtgcattctaaattaggagcataattagtgttatttgaacatctaaagggctac 488  Q
    ||||||||||||| | ||| |||| |||||  ||||||||||||| |||||||  ||||||  |||| |||||||||||||||||||||||||   ||||    
T  13952999 aaaaaagcaagattttctctcttaggcatttcatcaaacaccttaagtgcatttcaaattactagcacaattagtgttatttgaacatctaaacaactac 13953098  T
Q  489 attgtacctacattgtctctaaacaacaattccagcataaacaatactttaaaac 543  Q
    ||||||||| || |  |||||||||||||||| |||||||||||||| |||||||    
T  13953099 attgtacctgcacttactctaaacaacaattctagcataaacaatacattaaaac 13953153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 4 - 164
Target Start/End: Original strand, 6272768 - 6272931
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaatatgtcataattatacatcacagtcaaaaagtacatnnnnnnng---cctaatcacaatca 100  Q
    |||||| | ||| ||||| ||||||||||||||||| || ||||||||||||||||||||||| |||||||||||           | |||||| |||||    
T  6272768 atgtcggaaaatgtcatacaaataccaaaatgtacgaaacatgtcataattatacatcacagtaaaaaagtacataaaaaaaaaaccttaatcataatca 6272867  T
Q  101 accctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcaggg 164  Q
    | | |||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||    
T  6272868 atcttactgcctagcatgcctcggccccctgcgccgcctggaaatctgatacgtaagggcaggg 6272931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 41964532 - 41964370
Alignment:
Q  17 tcatagaaataccaaaatgtacggaatatgtcataattatacatcac---------agtcaaaaagtacatnnnnnnngcctaatcacaatcaaccctac 107  Q
    |||||||||||  ||||||||||||| ||||||||||||||||||||         ||| |||||||||||       || |||||| ||||||||||||    
T  41964532 tcatagaaataagaaaatgtacggaacatgtcataattatacatcacgatcatcacagtaaaaaagtacataaaaaaagcttaatcataatcaaccctac 41964433  T
Q  108 tgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggcaacca 170  Q
    ||||||||||| |||| ||||||||| || ||| |||||||||||||||||||||||| ||||    
T  41964432 tgcctagcatgcctcgaccccctgcgtcgtctggcaatctgatacgtaagggcagggcgacca 41964370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 46528765 - 46528839
Alignment:
Q  169 catagcataaaaatccaagcaagtaacatgtaacatatcaataattaaacttaggcattcattcaaatccacact 243  Q
    |||||||||||||||||| ||||||||||||||||||| || ||| ||||||| |||||||| ||||||||||||    
T  46528765 catagcataaaaatccaaccaagtaacatgtaacatataaaaaatgaaacttaagcattcatacaaatccacact 46528839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 407 - 543
Target Start/End: Original strand, 28510321 - 28510457
Alignment:
Q  407 cacttatgcattatatcaaacaccttatgtgcattctaaattaggagcataattagtgttatttgaacatctaaagggctacattgtacctacattgtct 506  Q
    |||||| |||||  || |||||||||| |||||||||||||||  | || |||||||||||||||||||||||||   ||||  |||||||| | |  ||    
T  28510321 cacttaggcatttcatgaaacaccttaagtgcattctaaattactaacacaattagtgttatttgaacatctaaacaactacggtgtacctatacttact 28510420  T
Q  507 ctaaacaacaattccagcataaacaatactttaaaac 543  Q
    |||| ||||||||||||||  |||||||| |||||||    
T  28510421 ctaatcaacaattccagcaacaacaatacattaaaac 28510457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 405 - 543
Target Start/End: Complemental strand, 3938979 - 3938841
Alignment:
Q  405 ctcacttatgcattatatcaaacaccttatgtgcattctaaattaggagcataattagtgttatttgaacatctaaagggctacattgtacctacattgt 504  Q
    |||||||| |||||  ||||||||||||| |||||||||||||||  |||| ||||||||  |||| ||| ||||||   |||||||||||||| | | |    
T  3938979 ctcacttaggcatttcatcaaacaccttaagtgcattctaaattactagcacaattagtgaaatttcaacttctaaacaactacattgtacctatacttt 3938880  T
Q  505 ctctaaacaacaattccagcataaacaatactttaaaac 543  Q
     ||||| ||||||| ||||||  || ||||| |||||||    
T  3938879 ttctaatcaacaataccagcaacaaaaatacattaaaac 3938841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 86 - 158
Target Start/End: Original strand, 45075571 - 45075644
Alignment:
Q  86 gcctaatcacaatcaaccctactgcctagcatgtctcggccccc-tgcgccgcctgacaatctgatacgtaagg 158  Q
    ||||||||| ||||||||||  ||||||||||| |||| ||||| | ||||||||| |||||||||||||||||    
T  45075571 gcctaatcataatcaaccctgttgcctagcatgcctcgccccccctacgccgcctggcaatctgatacgtaagg 45075644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 373
Target Start/End: Original strand, 11409319 - 11409375
Alignment:
Q  317 aaaatccaagcttataataattataacatatatactttataaaattgaagatatttg 373  Q
    |||||||||||||| |||  |||||||||||||||||||||||||| || |||||||    
T  11409319 aaaatccaagcttagaatccttataacatatatactttataaaatttaacatatttg 11409375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 477
Target Start/End: Complemental strand, 45414870 - 45414710
Alignment:
Q  317 aaaatccaagcttataataattataacatatatactttataaaattgaagatatttgnnnnnnnnttacacgaaaaaagcaagatctcctcacttatgca 416  Q
    ||||||||| ||||||| ||||||||||||| ||| |||||||||| || |||||||           ||| |||||||||||||    ||||||| |||    
T  45414870 aaaatccaaccttataaaaattataacatatgtacattataaaatttaacatatttgaaaaaaaaaatcacaaaaaaagcaagattatttcacttaggca 45414771  T
Q  417 ttatatcaaacaccttatgtgcattctaaattaggagcataattagtgttatttgaacatc 477  Q
    ||  ||||||||| ||| ||||||| |||| ||  |||| |||||||||||||| ||||||    
T  45414770 tttcatcaaacactttaagtgcattttaaaatactagcacaattagtgttatttcaacatc 45414710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 533
Target Start/End: Original strand, 17733530 - 17733747
Alignment:
Q  317 aaaatccaagcttataataattataacatatatactttataaaattgaagatatttgnnnnnnnntta-cacgaaaaaagcaagatctcctcacttatgc 415  Q
    ||||| ||| |||||||| ||||||||||| |||| ||||||||||||| |||||||          | ||| ||||||||||||| | ||||||||  |    
T  17733530 aaaatgcaaacttataatcattataacatacatacattataaaattgaacatatttgaagaaaaaaaatcac-aaaaaagcaagattttctcacttagac 17733628  T
Q  416 attatatcaaacaccttatgtgcattctaaattaggagcataattagtgttatttgaacatctaa-agggctacattgtacctacattgtctctaaacaa 514  Q
    |||  ||||| |||||||||||||||  ||| ||  |||| ||||||||||| || |||||| ||     |||||||||||||| |    ||||||||||    
T  17733629 atttcatcaatcaccttatgtgcatttcaaaatactagcacaattagtgttaattcaacatcaaattcaactacattgtacctaaacctactctaaacaa 17733728  T
Q  515 caattccagcataaacaat 533  Q
    |||| ||||||||||||||    
T  17733729 caatgccagcataaacaat 17733747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 45415281 - 45415235
Alignment:
Q  17 tcatagaaataccaaaatgtacggaatatgtcataattatacatcac 63  Q
    |||| ||||||| ||||||||||||| ||||||||||||||||||||    
T  45415281 tcatggaaatacaaaaatgtacggaacatgtcataattatacatcac 45415235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 34195458 - 34195421
Alignment:
Q  169 catagcataaaaatccaagcaagtaacatgtaacatat 206  Q
    |||||||||||||||||| |||||||||||||||||||    
T  34195458 catagcataaaaatccaaccaagtaacatgtaacatat 34195421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 389 - 477
Target Start/End: Complemental strand, 31592887 - 31592799
Alignment:
Q  389 aaaaaagcaagatctcctcacttatgcattatatcaaacaccttatgtgcattctaaattaggagcataattagtgttatttgaacatc 477  Q
    ||||||||||| | | |||||||| |||||  |||||||||||||||||||||  ||| ||  |||| ||||||||||| || ||||||    
T  31592887 aaaaaagcaaggttttctcacttaggcatttcatcaaacaccttatgtgcatttcaaaatactagcacaattagtgttaattcaacatc 31592799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 306
Target Start/End: Complemental strand, 3939130 - 3939091
Alignment:
Q  267 tttatataacataccacattatgtcattcttcaaacttgc 306  Q
    ||||| ||||||||||||||||||||||| ||||||||||    
T  3939130 tttatgtaacataccacattatgtcattcatcaaacttgc 3939091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 306
Target Start/End: Original strand, 17733372 - 17733411
Alignment:
Q  267 tttatataacataccacattatgtcattcttcaaacttgc 306  Q
    ||||| ||||||||||||||||||||||| ||||||||||    
T  17733372 tttatgtaacataccacattatgtcattcatcaaacttgc 17733411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 327 - 373
Target Start/End: Original strand, 13952930 - 13952976
Alignment:
Q  327 cttataataattataacatatatactttataaaattgaagatatttg 373  Q
    |||||||| ||||||||||| |||| ||||||||||||| |||||||    
T  13952930 cttataatcattataacatacatacattataaaattgaacatatttg 13952976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 41958454 - 41958412
Alignment:
Q  167 accatagcataaaaatccaagcaagtaacatgtaacatatcaa 209  Q
    ||||||||||||||||||||| ||||| |||||||||| ||||    
T  41958454 accatagcataaaaatccaagaaagtagcatgtaacatctcaa 41958412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 31592959 - 31592903
Alignment:
Q  317 aaaatccaagcttataataattataacatatatactttataaaattgaagatatttg 373  Q
    ||||| ||| |||||||| ||||||||||| |||| |||| |||||||| |||||||    
T  31592959 aaaatgcaaacttataatcattataacatacatacattatcaaattgaacatatttg 31592903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 178 - 545
Target Start/End: Original strand, 39390218 - 39390586
Alignment:
Q  178 aaaatccaagcaagtaacatgtaacatatcaataattaaacttaggcattcattcaaatccacacttacaatcattcaacaacttag-catttatataac 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||     
T  39390218 aaaatccaagcaagtaacatgtaacatatcaataattaaacttaggcattcatacaaatccacacttacaatcattcaacaacttagacatttatataaa 39390317  T
Q  277 ataccacattatgtcattcttcaaacttgcnnnnnnnnttaaaatccaagcttataataattataacatatatactttataaaattgaagatatttgnnn 376  Q
    ||||||||||||||||||||| ||||||||        ||||||| |||| |||||||||||| ||||||||||| ||||||||||||| |||||||       
T  39390318 ataccacattatgtcattcttaaaacttgccaaaaaatttaaaattcaagtttataataattagaacatatatacattataaaattgaacatatttgaga 39390417  T
Q  377 nnnnnttacacgaaaaaagcaagatctcctcacttatgcattatatcaaacaccttatgtgcattctaaattaggagcataattagtgttatttgaacat 476  Q
         |||||| |||||||||| || |  | ||||| |||||  |||||||||||||| |||||||||||||||||||| || |||||||||||||||||    
T  39390418 aaaaattacacaaaaaaagcaacatgttgttacttaggcatttcatcaaacaccttatctgcattctaaattaggagcacaactagtgttatttgaacat 39390517  T
Q  477 ctaaagggctacattgtacctacattgtctctaaacaacaattccagcataaacaatactttaaaacct 545  Q
    ||||||||||||||||||||||||||  | ||||||||||||||||  |||||||||||||||||||||    
T  39390518 ctaaagggctacattgtacctacatttacactaaacaacaattccataataaacaatactttaaaacct 39390586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 169 - 373
Target Start/End: Complemental strand, 31303023 - 31302816
Alignment:
Q  169 catagcataaaaatccaagcaagtaacatgtaacatatcaataattaaacttaggcattcattcaaatccacacttacaatcattcaacaactta-gcat 267  Q
    |||||||||||||||||| ||| |||||||||||||||||| ||| |||||||||||||||| |||||||||| ||| ||||||||||||||||| ||||    
T  31303023 catagcataaaaatccaaccaaataacatgtaacatatcaaaaatgaaacttaggcattcatacaaatccacagttagaatcattcaacaacttaggcat 31302924  T
Q  268 ttatataacataccacattatgtcattcttcaaacttgcnnnnnnnntt--aaaatccaagcttataataattataacatatatactttataaaattgaa 365  Q
    |||||||||||||||||||||||||||||||||||||||        ||  ||||||||||||||||||||||||||||||||||| |||||| ||| ||    
T  31302923 ttatataacataccacattatgtcattcttcaaacttgccaaaaatttttaaaaatccaagcttataataattataacatatatacattataagatttaa 31302824  T
Q  366 gatatttg 373  Q
     |||||||    
T  31302823 catatttg 31302816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 336 - 533
Target Start/End: Original strand, 55740931 - 55741128
Alignment:
Q  336 attataacatatatactttataaaattgaagatatttgnnnnnnnnttacacgaaaaaagcaagatctcctcacttatgcattatatcaaacaccttatg 435  Q
    ||||||||||||||||  |||||||||||| |||||||        |||||| ||||||  || || | |||||||| |||||  ||||||||||||| |    
T  55740931 attataacatatatacactataaaattgaacatatttgtaaaaaaattacacaaaaaaactaatattttctcacttaggcatttcatcaaacaccttaag 55741030  T
Q  436 tgcattctaaattaggagcataattagtgttatttgaacatctaaagggctacattgtacctacattgtctctaaacaacaattccagcataaacaat 533  Q
    |||||| |||||||  |||| |||||||||||||| ||||||||||   ||||||||||||||||||  |||||||||| |||| |||||||||||||    
T  55741031 tgcattataaattactagcacaattagtgttatttaaacatctaaacaactacattgtacctacatttactctaaacaagaattacagcataaacaat 55741128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 54602476 - 54602632
Alignment:
Q  17 tcatagaaataccaaaatgtacggaatatgtcataattatacatcacagtcaaaaa-gtacatnnnnnnngcc--taatcacaatcaaccctactgccta 113  Q
    ||||| ||||||||||||||| |||| ||||||||||||||||||||||| ||||| |||||          |  ||||   |||||||||| |||||||    
T  54602476 tcatacaaataccaaaatgtatggaacatgtcataattatacatcacagtaaaaaaagtacaaaaaaaaaaaccttaattttaatcaaccctgctgccta 54602575  T
Q  114 gcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggcaacca 170  Q
    ||||| ||||||||||||||||||||| |||||| ||||||||||||||||| ||||    
T  54602576 gcatgcctcggccccctgcgccgcctggcaatctaatacgtaagggcagggcgacca 54602632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 86 - 170
Target Start/End: Original strand, 39388810 - 39388894
Alignment:
Q  86 gcctaatcacaatcaaccctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggcaacca 170  Q
    ||||||||| ||||||||||||||||||||||| ||  ||||||| |||| |||| ||||||||||||||||| |||||| ||||    
T  39388810 gcctaatcataatcaaccctactgcctagcatgccttagccccctacgccacctggcaatctgatacgtaaggtcagggcgacca 39388894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 389 - 533
Target Start/End: Original strand, 54603731 - 54603876
Alignment:
Q  389 aaaaaagcaagatctcctcacttatgcattatatcaaacaccttatgtgcattctaaattaggagcataattagtgttatttgaacatctaa-agggcta 487  Q
    ||||||||||||| | |||||||| |||||  |||||||||||||||||||||  ||| ||  |||| ||||||||||| || |||||| ||     |||    
T  54603731 aaaaaagcaagattttctcacttaggcatttcatcaaacaccttatgtgcatttcaaaatactagcacaattagtgttaattcaacatcaaattcaacta 54603830  T
Q  488 cattgtacctacattgtctctaaacaacaattccagcataaacaat 533  Q
    ||||||||| | |    |||||||||||||| ||||||||||||||    
T  54603831 cattgtacccaaacctactctaaacaacaatgccagcataaacaat 54603876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 12024911 - 12024967
Alignment:
Q  114 gcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggcaacca 170  Q
    ||||| |||||||||||| ||||||||  ||||||||||||||||||||||| ||||    
T  12024911 gcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgacca 12024967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 317 - 373
Target Start/End: Original strand, 12027811 - 12027867
Alignment:
Q  317 aaaatccaagcttataataattataacatatatactttataaaattgaagatatttg 373  Q
    ||||||||| |||||||||||||||| |||||||| |||||| ||| || |||||||    
T  12027811 aaaatccaaccttataataattataatatatatacattataagatttaacatatttg 12027867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 317 - 373
Target Start/End: Original strand, 54603655 - 54603711
Alignment:
Q  317 aaaatccaagcttataataattataacatatatactttataaaattgaagatatttg 373  Q
    ||||| ||| |||||||| ||||||||||| |||| ||||||||||||| |||||||    
T  54603655 aaaatgcaaacttataatcattataacatacatacattataaaattgaacatatttg 54603711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 306
Target Start/End: Original strand, 54603503 - 54603542
Alignment:
Q  267 tttatataacataccacattatgtcattcttcaaacttgc 306  Q
    ||||| ||||||||||||||||||||||| ||||||||||    
T  54603503 tttatgtaacataccacattatgtcattcatcaaacttgc 54603542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 257
Target Start/End: Original strand, 12027667 - 12027736
Alignment:
Q  188 caagtaacatgtaacatatcaataattaaacttaggcattcattcaaatccacacttacaatcattcaac 257  Q
    |||||||||||||||||||||  ||||  ||||||||||||||  ||||  | ||||| |||||||||||    
T  12027667 caagtaacatgtaacatatcacaaattttacttaggcattcataaaaatttaaacttagaatcattcaac 12027736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 208; Significance: 1e-113; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 166 - 543
Target Start/End: Complemental strand, 19871229 - 19870851
Alignment:
Q  166 aaccatagcataaaaatccaagcaagtaacatgtaacatatcaataattaaacttaggcattcattcaaatccacacttacaatcattcaacaactta-g 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |    
T  19871229 aaccatagcataaaaatccaagcaagtaacatgtaacatatcaataattaaacttaggcattcatacaaattcacacttacaatcattcaacaacttagg 19871130  T
Q  265 catttatataacataccacattatgtcattcttcaaacttgcnnnnnnnntt-aaaatccaagcttataataattataacatatatactttataaaattg 363  Q
    ||||||||||||||||||||||||||||||||||||||||||        || |||||||||| |||||||||||| ||||||||||| |||||||||||    
T  19871129 catttatataacataccacattatgtcattcttcaaacttgccaaaaaatttaaaaatccaagtttataataattacaacatatatacattataaaattg 19871030  T
Q  364 aagatatttgnnnnnnnnttacacgaaaaaagcaagatctcctcacttatgcattatatcaaacaccttatgtgcattctaaattaggagcataattagt 463  Q
    |  |||||||        |||||| |||||| ||| || | |||||||| |||||  |||||||||||||||||||||||||| |||| ||| || ||||    
T  19871029 atcatatttgaaaaaaaattacacaaaaaaatcaacattttctcacttaggcatttcatcaaacaccttatgtgcattctaaaataggggcacaactagt 19870930  T
Q  464 gttatttgaacatctaaagggctacattgtacctacattgtctctaaacaacaattccagcataaacaatactttaaaac 543  Q
    |||||||| |||||||||||||| |||||||||||| ||  | ||||||||||||| |||||||||||||||||||||||    
T  19870929 gttatttgtacatctaaagggctgcattgtacctacttttacactaaacaacaatt-cagcataaacaatactttaaaac 19870851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 265 - 533
Target Start/End: Original strand, 9041806 - 9042075
Alignment:
Q  265 catttatataacataccacattatgtcattcttcaaacttgcnnnnnnnnttaaaa-tccaagcttataataattataacatatatactttataaaattg 363  Q
    ||||||||| ||||||||||||||||||||||||||||||||        | |||| |||||||||||||||||||||||||||||||||||||||||||    
T  9041806 catttatattacataccacattatgtcattcttcaaacttgccaaaaaattaaaaaatccaagcttataataattataacatatatactttataaaattg 9041905  T
Q  364 aagatatttgnnnnnnnnttacacgaaaaaagcaagatctcctcacttatgcattatatcaaacaccttatgtgcattctaaattaggagcataattagt 463  Q
    ||||||||||        |||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9041906 aagatatttgaaaaaaaattacacaaaaaaagcaagatttcctcacttatgcattttatcaaacaccttatgtgcattctaaattaggagcataattagt 9042005  T
Q  464 gttatttgaacatctaaagggctacattgtacctacattgtctctaaacaacaattccagcataaacaat 533  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  9042006 gttatttgaacatctaaagggctacattgtacctacattgtctctaaacaacaattacatcataaacaat 9042075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 10825630 - 10825797
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaatatgtcataattatacatcacagtcaaaaagtacatnnnnnnn-gcctaatcacaatcaac 102  Q
    |||||| | ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||        |||||||||||||||||    
T  10825630 atgtcggaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacataaaaaaaagcctaatcacaatcaac 10825729  T
Q  103 cctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggcaacca 170  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  10825730 cctactgcctagcatgcctcggccccctgcgccgcctggcaatctgatacgtaagggcagggcgacca 10825797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 198 - 342
Target Start/End: Complemental strand, 23063102 - 23062956
Alignment:
Q  198 gtaacatatcaataattaaacttaggcattcattcaaatccacacttacaatcattcaacaacttag-catttatataacataccacattatgtcattct 296  Q
    |||||||||||| ||| |||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23063102 gtaacatatcaaaaatgaaacttaggcattcatacaaatccacacttaaaatcattcaacaacttagacatttatataacataccacattatgtcattct 23063003  T
Q  297 tcaaacttgcnnnnnnnntt-aaaatccaagcttataataattataa 342  Q
    ||||||||||        || ||||||||||||||||||||||||||    
T  23063002 tcaaacttgccaaaaaatttaaaaatccaagcttataataattataa 23062956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 7263151 - 7262975
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaatatgtcataattatacatcac--------agtcaaaaagtacatnnnnnnn-gcctaatca 94  Q
    |||||| | ||| |||||||||||  ||||||||||||| ||||||||||||||||||||        |||||||||||||||        |||| ||||    
T  7263151 atgtcggaaaatgtcatagaaataaaaaaatgtacggaacatgtcataattatacatcaccatgatcaagtcaaaaagtacataaaaaaaagccttatca 7263052  T
Q  95 caatcaaccctactgcctagcatgtctcggccccc-tgcgccgcctgacaatctgatacgtaagggcagggcaacca 170  Q
     |||||||||| |||||||||||| |||||||||| |||||||||||  ||||||||||||||||| ||||| ||||    
T  7263051 taatcaaccctgctgcctagcatgcctcggcccccctgcgccgcctggtaatctgatacgtaagggaagggcgacca 7262975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 86 - 170
Target Start/End: Complemental strand, 23067301 - 23067217
Alignment:
Q  86 gcctaatcacaatcaaccctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggcaacca 170  Q
    ||||||||| ||||||| ||| |||||||| || |||||||||||||||||||||  ||||||||||||||||||||||| ||||    
T  23067301 gcctaatcataatcaactctattgcctagcttgcctcggccccctgcgccgcctggtaatctgatacgtaagggcagggcgacca 23067217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 86 - 170
Target Start/End: Complemental strand, 19876704 - 19876620
Alignment:
Q  86 gcctaatcacaatcaaccctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggcaacca 170  Q
    ||||||||| ||| ||||||||||| ||||||| |||| ||| |||||| ||||| |||||||||||||||||||||||| ||||    
T  19876704 gcctaatcataattaaccctactgcgtagcatgcctcgcccctctgcgctgcctggcaatctgatacgtaagggcagggcgacca 19876620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 565 - 613
Target Start/End: Original strand, 35956620 - 35956668
Alignment:
Q  565 tcaaactaaaataagcaaaagttcacataaataagtgtttagagaatct 613  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35956620 tcaaactaaaataagcaaaagttcacataaataagtgtttagagaatct 35956668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 317 - 441
Target Start/End: Original strand, 42449471 - 42449598
Alignment:
Q  317 aaaatccaagcttataataattataacatatatactttataaaattgaagatatttgnnnnnnnnttacac---gaaaaaagcaagatctcctcacttat 413  Q
    ||||| ||| |||||||| |||||||||||||||| ||||||||||||| |||||||        ||||||    ||||||||||||| | ||||||||     
T  42449471 aaaatgcaaacttataatcattataacatatatacattataaaattgaacatatttgcaaaaatattacacaaaaaaaaaagcaagattttctcacttag 42449570  T
Q  414 gcattatatcaaacaccttatgtgcatt 441  Q
    |||||  |||||||||||||||||||||    
T  42449571 gcattccatcaaacaccttatgtgcatt 42449598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 317 - 441
Target Start/End: Original strand, 10826522 - 10826644
Alignment:
Q  317 aaaatccaagcttataataattataacatatatactttataaaattgaagatatttgnnnnnnnnttacacgaaaaaagcaagatctcctcacttatgca 416  Q
    ||||| ||| |||||||| ||||||||||||| |  ||||||||||||| |||||||        |||||| ||||||||||||| |  ||||||| |||    
T  10826522 aaaatgcaaacttataatcattataacatataca--ttataaaattgaatatatttgcaaaaatattacacaaaaaaagcaagattttatcacttaggca 10826619  T
Q  417 ttatatcaaacaccttatgtgcatt 441  Q
    ||  |||||||||||||||||||||    
T  10826620 tttcatcaaacaccttatgtgcatt 10826644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 23067382 - 23067336
Alignment:
Q  17 tcatagaaataccaaaatgtacggaatatgtcataattatacatcac 63  Q
    |||||||||||  ||||||||||||| ||||||||||||||||||||    
T  23067382 tcatagaaataagaaaatgtacggaacatgtcataattatacatcac 23067336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 9041703 - 9041740
Alignment:
Q  169 catagcataaaaatccaagcaagtaacatgtaacatat 206  Q
    |||||||||||||||||| |||||||||||||||||||    
T  9041703 catagcataaaaatccaaccaagtaacatgtaacatat 9041740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 317 - 467
Target Start/End: Complemental strand, 23062800 - 23062654
Alignment:
Q  317 aaaatccaagcttataataattataacatatatactttataaaattgaagatatttgnnnnnnnnttacacgaaaaaagcaagatctcctcacttatgca 416  Q
    ||||| ||| |||||||| ||||||||||| ||    |||||||||||| |||||||        |||||| |||||||||| || | |||||||| |||    
T  23062800 aaaatgcaaacttataatcattataacatacat----tataaaattgaacatatttgcaaaaaaattacacaaaaaaagcaatattttctcacttaggca 23062705  T
Q  417 ttatatcaaacaccttatgtgcattctaaattaggagcataattagtgtta 467  Q
    ||  ||||||||||||| |||||||  ||| ||  |||| |||||||||||    
T  23062704 tttcatcaaacaccttaagtgcatttcaaaatattagcacaattagtgtta 23062654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 169 - 543
Target Start/End: Original strand, 40614050 - 40614424
Alignment:
Q  169 catagcataaaaatccaagcaagtaacatgtaacatatcaataattaaacttaggcattcattcaaatccacacttacaatcattcaacaactta-gcat 267  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| |||||||||||| |||| ||||    
T  40614050 catagcataaaaatccaagcaagtaacatgtaacatataaaaaattaaacttaggcattcatacaaatccacacttagaatcattcaacaccttaagcat 40614149  T
Q  268 ttatataacataccacattatgtcattcttcaaacttgcnnnnnnnnttaaaatccaagcttataataattataacatatatactttataaaattgaaga 367  Q
    ||||||||||||||||||||||||||||||||||||| |        |   ||||||||||||||||||||| ||||||||||| ||||||||||||| |    
T  40614150 ttatataacataccacattatgtcattcttcaaacttccaaaaaattt---aatccaagcttataataattacaacatatatacattataaaattgaaca 40614246  T
Q  368 tatttgnnnnnnnn--ttacacgaaaaaagcaagatctcctcacttatgcattatatcaaacaccttatgtgcattctaaattaggagcataattagtgt 465  Q
    |||||           |||||| |||||||||| || | |||||||| |||||  ||||||||||||||||||||||||||||||||||| ||||| |||    
T  40614247 tattttaaaaaaaaaattacacaaaaaaagcaatattttctcacttaggcatttcatcaaacaccttatgtgcattctaaattaggagcacaattaatgt 40614346  T
Q  466 tatttgaacatctaaagggctacattgtacctacattgtctctaaacaacaattccagcataaacaatactttaaaac 543  Q
    ||||||||||||||||||| |||||||||||||||||  || ||||||||||||||||||||||||||||||||||||    
T  40614347 tatttgaacatctaaagggttacattgtacctacatttactataaacaacaattccagcataaacaatactttaaaac 40614424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 170 - 342
Target Start/End: Complemental strand, 4172264 - 4172090
Alignment:
Q  170 atagcataaaaatccaagcaagtaacatgtaacatatcaataattaaacttaggcattcattcaaatccacacttacaatcattcaacaactta-gcatt 268  Q
    ||||||||||||||||| |||||||||| ||||||||||| ||| |||||||||||||||| || ||||||||||| |||||||||| |||||| |||||    
T  4172264 atagcataaaaatccaaccaagtaacatataacatatcaaaaatgaaacttaggcattcatacatatccacacttagaatcattcaataacttaggcatt 4172165  T
Q  269 tatataacataccacattatgtcattcttcaaacttgcnnnnnnnntt-aaaatccaagcttataataattataa 342  Q
    ||||||||||||||||||||||||||||||||||||||        || ||||||||||||||||||||||||||    
T  4172164 tatataacataccacattatgtcattcttcaaacttgctaaaaaatttaaaaatccaagcttataataattataa 4172090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 31501048 - 31501219
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaatatgtcataattatacatcacagtcaaaaagtacatnnnnnnn-----gcctaatcacaat 98  Q
    |||||| | ||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||            |||||||||||||    
T  31501048 atgtcggaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcatagtcaaaaagtacataaaaaaaaaaaagcctaatcacaat 31501147  T
Q  99 caaccctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggcaacca 170  Q
    ||||||| |||||||||||| |||||||||||||| ||||||| ||||||||||||||||||| ||| ||||    
T  31501148 caaccctgctgcctagcatgcctcggccccctgcgtcgcctgaaaatctgatacgtaagggcaaggcgacca 31501219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 317 - 533
Target Start/End: Complemental strand, 21831649 - 21831429
Alignment:
Q  317 aaaatccaagcttataataattataacatatatactttataaaattgaagatatttgnnnnnnnnttacacg----aaaaaagcaagatctcctcactta 412  Q
    |||||||||||||| ||| |||||||||||||||| |||||||||| || |||||||        ||||||     |||||||||||||   ||||||||    
T  21831649 aaaatccaagcttagaatcattataacatatatacattataaaatttaacatatttgcagaaaaattacacacaaaaaaaaagcaagattatctcactta 21831550  T
Q  413 tgcattatatcaaacaccttatgtgcattctaaattaggagcataattagtgttatttgaacatctaaagggctacattgtacctacattgtctctaaac 512  Q
     |||||  ||||||||||||| |||||||||||||||| |||| |||||||| |||||||||| |||||   |||||||||||||| | |  |||||| |    
T  21831549 ggcatttcatcaaacaccttaagtgcattctaaattagtagcagaattagtgctatttgaacaactaaacaactacattgtacctaaacttactctaagc 21831450  T
Q  513 aacaattccagcataaacaat 533  Q
    |||||| ||||||||||||||    
T  21831449 aacaatgccagcataaacaat 21831429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 4 - 158
Target Start/End: Complemental strand, 19508718 - 19508562
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaatatgtcataattatacatcacagtcaaaaagtacat--nnnnnnngcctaatcacaatcaa 101  Q
    |||||| | ||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||          |||||||| ||||||    
T  19508718 atgtcggaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtccaaaagtacataaaaaaaaaccctaatcataatcaa 19508619  T
Q  102 ccctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagg 158  Q
    | || |||||||||||| || ||||||||| |||||||| |||||||||||||||||    
T  19508618 cactgctgcctagcatgccttggccccctgtgccgcctggcaatctgatacgtaagg 19508562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 169 - 306
Target Start/End: Complemental strand, 26172131 - 26171996
Alignment:
Q  169 catagcataaaaatccaagcaagtaacatgtaacatatcaataattaaacttaggcattcattcaaatccacacttacaatcattcaacaactta-gcat 267  Q
    |||| |||||||||||||||||||||||||||||||||||  |||||||||| |||||||||  |||||||  |||| |||||||   ||||||| ||||    
T  26172131 catatcataaaaatccaagcaagtaacatgtaacatatcacaaattaaacttgggcattcataaaaatccaagcttagaatcatt---caacttaggcat 26172035  T
Q  268 ttatataacataccacattatgtcattcttcaaacttgc 306  Q
    | || ||||||||||||||||||||||||||||||||||    
T  26172034 tcatgtaacataccacattatgtcattcttcaaacttgc 26171996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 26393964 - 26393790
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaatatgtcataattatacatcac--------agtcaaaaagtacatnnnnnnngcctaatcac 95  Q
    |||||||| ||| |||||||||||  |||||||| |||| ||||||||||||||||||||        |||||||||||||||       |||||||||     
T  26393964 atgtcgaaaaatgtcatagaaataaaaaaatgtatggaacatgtcataattatacatcaccatgatcaagtcaaaaagtacatataaaaagcctaatcat 26393865  T
Q  96 aatcaaccctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggcaacca 170  Q
    |||||||||| ||| |||||||| |||||||||||||| |||| |  ||||||||||||||||||||||||||||    
T  26393864 aatcaaccctgctgactagcatgcctcggccccctgcgtcgccgggtaatctgatacgtaagggcagggcaacca 26393790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 317 - 498
Target Start/End: Complemental strand, 29899708 - 29899540
Alignment:
Q  317 aaaatccaagcttataataattataacatatatactttataaaattgaagatatttgnnnnnnnnttacacgaaaaaagcaagatctcctcacttatgca 416  Q
    ||||| ||| |||||||| |||||||||||||||| ||||||||||||| |||||||             | ||||||| || || | |||||||| |||    
T  29899708 aaaatgcaaacttataatcattataacatatatacattataaaattgaacatatttg-------------caaaaaaagtaacattttctcacttaggca 29899622  T
Q  417 ttatatcaaacaccttatgtgcattctaaattaggagcataattagtgttatttgaacatctaaagggctacattgtaccta 498  Q
    ||  ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||   || |||||||||||    
T  29899621 tttcatcaaacaccttatgcgcattctaaattaggagcacaattagtgttatttgaacatataaacaactgcattgtaccta 29899540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 86 - 165
Target Start/End: Original strand, 40612850 - 40612929
Alignment:
Q  86 gcctaatcacaatcaaccctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggc 165  Q
    ||||||||| |||||||||| ||||||| |||| ||| |||||||||||| ||||||||||||||||||| |||||||||    
T  40612850 gcctaatcataatcaaccctgctgcctaccatgcctctgccccctgcgccacctgacaatctgatacgtacgggcagggc 40612929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 317 - 467
Target Start/End: Original strand, 31508915 - 31509066
Alignment:
Q  317 aaaatccaagcttataataattataacatatatactttataaaattgaagatatttgnnnnnnnnttacac-gaaaaaagcaagatctcctcacttatgc 415  Q
    ||||| ||| |||||||| ||||||||||| |||| ||||||||||||| |||||||        ||||||  ||||||||||||| | |||||||| |     
T  31508915 aaaatgcaaacttataatcattataacatacatacattataaaattgaacatatttgcaaaaatattacacaaaaaaaagcaagattttctcacttagga 31509014  T
Q  416 attatatcaaacaccttatgtgcattctaaattaggagcataattagtgtta 467  Q
    |||  |||||||||||||||||||||  ||| ||  |||| |||||||||||    
T  31509015 atttcatcaaacaccttatgtgcatttcaaaatactagcacaattagtgtta 31509066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 4174889 - 4174815
Alignment:
Q  96 aatcaaccctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggcaacca 170  Q
    ||||||||||||||||||||||  |||| ||| | ||||||| || ||||||||||||||| |||||||| ||||    
T  4174889 aatcaaccctactgcctagcatacctcgacccacagcgccgcttggcaatctgatacgtaacggcagggcgacca 4174815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 359
Target Start/End: Complemental strand, 34457561 - 34457519
Alignment:
Q  317 aaaatccaagcttataataattataacatatatactttataaa 359  Q
    ||||||||| ||||||||||||||||||||||||| |||||||    
T  34457561 aaaatccaaccttataataattataacatatatacattataaa 34457519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 15738224 - 15738293
Alignment:
Q  96 aatcaaccctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggc 165  Q
    ||||| |||||||| |||  ||| ||| ||||||||||  ||||| ||||||||||||||||||||||||    
T  15738224 aatcagccctactgtctacgatgcctctgccccctgcgatgcctggcaatctgatacgtaagggcagggc 15738293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 170
Target Start/End: Complemental strand, 29902373 - 29902289
Alignment:
Q  86 gcctaatcacaatcaaccctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggcaacca 170  Q
    ||||||||| |||||||||| |||||||  ||||||| ||||||| ||| |||||  ||||  ||| ||||||||||||| ||||    
T  29902373 gcctaatcaaaatcaaccctgctgcctacgatgtctctgccccctacgctgcctggaaatccaatatgtaagggcagggcgacca 29902289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 34458600 - 34458560
Alignment:
Q  124 gccccctgcgccgcctgacaatctgatacgtaagggcaggg 164  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  34458600 gccccctgcgccgcctggcaatctgatatgtaagggcaggg 34458560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 2119760 - 2119818
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaatatgtcataattatacatca 62  Q
    |||| ||| ||| ||||||||||| |||||||||||||| |||||| ||| ||||||||    
T  2119760 atgttgaaaaatgtcatagaaatatcaaaatgtacggaacatgtcacaataatacatca 2119818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 15738124 - 15738170
Alignment:
Q  17 tcatagaaataccaaaatgtacggaatatgtcataattatacatcac 63  Q
    |||||||||||| |||||||||| || |||||||||| |||||||||    
T  15738124 tcatagaaatactaaaatgtacgaaacatgtcataataatacatcac 15738170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 2119889 - 2119926
Alignment:
Q  124 gccccctgcgccgcctgacaatctgatacgtaagggca 161  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  2119889 gccccctgcgccgcctgaaaatctgataagtaagggca 2119926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 174 - 542
Target Start/End: Complemental strand, 5614577 - 5614206
Alignment:
Q  174 cataaaaatccaagcaagtaacatgtaacatatcaataattaaacttaggcattcattcaaatccacacttacaatcattcaacaactta-gcatttata 272  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  5614577 cataaaaattcaagcaagtaacatgtaacatgtcaataattaaacttaggcattcatacaaatccacacttacaatcattcaacaacttaggcatttata 5614478  T
Q  273 taacataccacattatgtcattcttcaaacttgcnnnnnnnntt-aaaatccaagcttataataattataacatatatactttataaaattgaagatatt 371  Q
    |||||||||||||||| |||||||||||||||||        || |||||||||| |||||||||||| ||||||||||| ||||||||||||| |||||    
T  5614477 taacataccacattatttcattcttcaaacttgccaaaaaaattaaaaatccaagtttataataattacaacatatatacattataaaattgaacatatt 5614378  T
Q  372 tg--nnnnnnnnttacacgaaaaaagcaagatctcctcacttatgcattatatcaaacaccttatgtgcattctaaattaggagcataattagtgttatt 469  Q
    ||          |||||| |||||||||| || | |||||||| |||||  ||||||||||||||||||||| ||||||||||||| || ||||||||||    
T  5614377 tgaaaaaaaaaattacacaaaaaaagcaacattttctcacttaagcatttcatcaaacaccttatgtgcattataaattaggagcacaactagtgttatt 5614278  T
Q  470 tgaacatctaaagggctacattgtacctacattgtctctaaacaacaattccagcataaacaatactttaaaa 542  Q
    |||||||||||||||| ||| ||||||||||||     |||||||||||||||||||||||||||||||||||    
T  5614277 tgaacatctaaagggccaca-tgtacctacatttatagtaaacaacaattccagcataaacaatactttaaaa 5614206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 169 - 543
Target Start/End: Original strand, 19273015 - 19273394
Alignment:
Q  169 catagcataaaaatccaagcaagtaacatgtaacatatcaataattaaacttaggcattcattcaaatccacacttacaatcattcaacaacttag-cat 267  Q
    |||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||    
T  19273015 catagcataaaaatccaaacaagtaacatgtaacatatcacaaattaaacttaggcattcatacaaatccacacttagaatcattcaacaacttagacat 19273114  T
Q  268 ttatataacataccacattatgtcattcttcaaacttgcnnnnnnnnttaaaatccaagcttataataattataacatatatactttataaaattgaaga 367  Q
    |||| |||||||||||||||| |||||||||||||||||          ||||||||| |||||||| |||||||| ||||||| |||| ||||| ||      
T  19273115 ttatgtaacataccacattatttcattcttcaaacttgccaaaaaaagcaaaatccaaacttataatcattataacttatatacattat-aaatttaacc 19273213  T
Q  368 tatttgnnnnnnnnttacac-----gaaaaaagcaagatctcctcacttatgcattatatcaaacaccttatgtgcattctaaattaggagcataattag 462  Q
     |||||        | ||||      ||||||||||||    |||||||| |||||  ||||||||||||||||||||||||||||||||||| ||||||    
T  19273214 aatttgcaaaaaaataacacaaaaaaaaaaaagcaagaatatctcacttaggcatttcatcaaacaccttatgtgcattctaaattaggagcacaattag 19273313  T
Q  463 tgttatttgaacatctaaagggctacattgtacctacattgtctctaaacaacaattccagcataaacaatactttaaaac 543  Q
    |||||||||||||||||||   |||||||||||||| |    ||||||||||||||||||||||||||||||| |||||||    
T  19273314 tgttatttgaacatctaaacaactacattgtacctaaacctactctaaacaacaattccagcataaacaatacattaaaac 19273394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 264 - 533
Target Start/End: Original strand, 1259471 - 1259741
Alignment:
Q  264 gcatttatataacataccacattatgtcattcttcaaacttg-cnnnnnnnnttaaaatccaagcttataataattataacatatatactttataaaatt 362  Q
    |||| |||||||||||||||||||||| |||||||||||||| |        | ||||| ||||||||||||||||||||||||||||| ||||||||||    
T  1259471 gcatatatataacataccacattatgttattcttcaaacttggcaaaaaatgtaaaaattcaagcttataataattataacatatatacattataaaatt 1259570  T
Q  363 gaagatatttgnnnnnnnnttacacgaaaaaagcaagatctcctcacttatgcattatatcaaacaccttatgtgcattctaaattaggagcataattag 462  Q
     || |||||||        |||||| |||||||||| || | |||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||    
T  1259571 aaacatatttgaacaaaaattacacaaaaaaagcaacattttctcacttacgcatttcatcaaacaccttatgtgcattctaaattaggagcataattag 1259670  T
Q  463 tgttatttgaacatctaaagggctacattgtacctacattgtctctaaacaacaattccagcataaacaat 533  Q
    |||||||||||||||||||   |||||||||||||||| |  ||||||||||||||| || ||||||||||    
T  1259671 tgttatttgaacatctaaacaactacattgtacctacacttactctaaacaacaattacaacataaacaat 1259741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 5620514 - 5620363
Alignment:
Q  17 tcatagaaataccaaaatgtacggaatatgtcataattatacatcacagtcaaaaagtacatnnnnnnn---gcctaatcacaatcaaccctactgccta 113  Q
    ||||| ||||| ||||||||||||||| |||||||||||||||||| ||| |||||||||||          ||||||||| |||||||||| |||||||    
T  5620514 tcatacaaatatcaaaatgtacggaatgtgtcataattatacatcatagtaaaaaagtacataaaaaaaaaagcctaatcataatcaaccctgctgccta 5620415  T
Q  114 gcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggc 165  Q
    ||||| |||||| |||||||||||||| ||||||||||||||||||||||||    
T  5620414 gcatgcctcggctccctgcgccgcctggcaatctgatacgtaagggcagggc 5620363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 19268673 - 19268837
Alignment:
Q  17 tcatagaaataccaaaatgtacggaatatgtcataattatacatcac---------agtcaaaaagtacatnnnnnnn--gcctaatcacaatcaaccct 105  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||         ||||||||| |||||         ||||||||| ||||||||||    
T  19268673 tcatagaaatacgaaaatgtacggaacatgtcataattatacatcaccatcatcatagtcaaaaaatacataaaaaaaaagcctaatcagaatcaaccct 19268772  T
Q  106 actgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggcaacca 170  Q
     ||||||| |||| ||| ||||||||||||||||| |||||||||||||| ||||||||| ||||    
T  19268773 gctgcctaccatgcctctgccccctgcgccgcctggcaatctgatacgtatgggcagggcgacca 19268837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 4 - 165
Target Start/End: Complemental strand, 33523650 - 33523480
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaatatgtcataattatacatcac---------agtcaaaaagtacatnnnnnnngcctaatca 94  Q
    |||||| | ||| |||||||||||| ||||||||||||| ||||||||||||||||||||         |||| ||||||||||       |||||||||    
T  33523650 atgtcggaaaatgtcatagaaatacgaaaatgtacggaacatgtcataattatacatcaccataatcatagtccaaaagtacataaaaaaagcctaatca 33523551  T
Q  95 caatcaaccctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggc 165  Q
     |||||||||||||| ||| | || | | ||||||||||||||||  |||||||||| |||||||||||||    
T  33523550 taatcaaccctactgtctaccctgccgctgccccctgcgccgcctagcaatctgatatgtaagggcagggc 33523480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 2946332 - 2946286
Alignment:
Q  17 tcatagaaataccaaaatgtacggaatatgtcataattatacatcac 63  Q
    |||||||||||||||||| ||||||| |||||||||||||| |||||    
T  2946332 tcatagaaataccaaaatatacggaacatgtcataattatatatcac 2946286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 304
Target Start/End: Original strand, 1259439 - 1259468
Alignment:
Q  275 acataccacattatgtcattcttcaaactt 304  Q
    ||||||||||||||||||||||||||||||    
T  1259439 acataccacattatgtcattcttcaaactt 1259468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 3e-71; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 167 - 452
Target Start/End: Original strand, 8318914 - 8319202
Alignment:
Q  167 accatagcataaaaatccaagcaagtaacatgtaacatatcaataattaaacttaggcattcattcaaatccacacttacaatcattcaacaactta-gc 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || ||    
T  8318914 accatagcataaaaatccaagcaagtaacatgtaacatatcaataattaaacttaggcattcatacaaatccacacttacaatcaatcaacaacctaggc 8319013  T
Q  266 atttatataacataccacattatgtcattcttcaaacttgcnnnnnnnntt-aaaatccaagcttataataattataacatatatactttataaaattga 364  Q
    |||||||||||| | |||||||||||||||| |||||||||        || |||||||||| |||||||||||| ||||||||||| ||||||||||||    
T  8319014 atttatataacacatcacattatgtcattctccaaacttgccaaaaaatttaaaaatccaagtttataataattacaacatatatacattataaaattga 8319113  T
Q  365 agatatttg-nnnnnnnnttacacgaaaaaagcaagatctcctcacttatgcattatatcaaacaccttatgtgcattctaaattagga 452  Q
    | |||||||         |||||| || ||||||| || | ||||||||  ||||  ||||||||||||| ||||||||||||||||||    
T  8319114 acatatttgaaaaaaaaattacacaaacaaagcaacattttctcacttagacatttcatcaaacaccttacgtgcattctaaattagga 8319202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 44115848 - 44115997
Alignment:
Q  17 tcatagaaataccaaaatgtacggaatatgtcataattatacatcacagtcaaaaagtacat-nnnnnnngcctaatcacaatcaaccctactgcctagc 115  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  44115848 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacataaaaaaaagcctaatcacaatcaaccctactgcctagc 44115947  T
Q  116 atgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggc 165  Q
    |||  || |||||||||||| |||  ||||||||||||||||||||||||    
T  44115948 atgcatcagccccctgcgccacctagcaatctgatacgtaagggcagggc 44115997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 41270067 - 41269899
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaatatgtcataattatacatcacagtcaaaaa-gtacatnnnnnnngcc-taatcacaatcaa 101  Q
    |||||| | ||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| ||        || |||||| ||||||    
T  41270067 atgtcggaaaatgtcatataaataccaaaatgtacggaacatgtcataattatacatcacagtaaaaaaagtaaataaaaaaaaccctaatcataatcaa 41269968  T
Q  102 ccctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggcaacca 170  Q
    |||| |||||||||||| || |||||||||||||||||| |||||||||||||||||||||||| ||||    
T  41269967 ccctgctgcctagcatgccttggccccctgcgccgcctggcaatctgatacgtaagggcagggcgacca 41269899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 42095687 - 42095849
Alignment:
Q  17 tcatagaaataccaaaatgtacggaatatgtcataattatacatcac--------agtcaaaaagtacatnnnnnnn-gcctaatcacaatcaaccctac 107  Q
    |||||||||||  ||||||||||||| ||||||| ||||||||||||        |||||||||||||||        | ||||||| ||| |||| | |    
T  42095687 tcatagaaataataaaatgtacggaacatgtcattattatacatcaccatgatcaagtcaaaaagtacataaaaaaaagtctaatcataatgaaccttgc 42095786  T
Q  108 tgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggcaacca 170  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  42095787 tgcctagcatgcctcggccccctgcgccgcctggcaatctgatacgtaagggcagggcgacca 42095849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 421 - 498
Target Start/End: Original strand, 23718272 - 23718349
Alignment:
Q  421 atcaaacaccttatgtgcattctaaattaggagcataattagtgttatttgaacatctaaagggctacattgtaccta 498  Q
    ||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  23718272 atcaaacaccttaagtacattttaaattaggagcataattagtgttatttgaacatctaaacaactacattgtaccta 23718349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 86 - 165
Target Start/End: Original strand, 8317040 - 8317119
Alignment:
Q  86 gcctaatcacaatcaaccctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggc 165  Q
    |||||||||||||||||||| || ||||||||||||| ||| | ||||||||||| |||||||||| |||||||||||||    
T  8317040 gcctaatcacaatcaaccctgctacctagcatgtctctgcctcatgcgccgcctggcaatctgataagtaagggcagggc 8317119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 317 - 438
Target Start/End: Original strand, 44118878 - 44118999
Alignment:
Q  317 aaaatccaagcttataataattataacatatatactttataaaattgaagatatttgnnnnnnnnttacacgaaaaaagcaagatctcctcacttatgca 416  Q
    ||||| ||| |||||||| ||||||||||| |||| ||||||||||||| |||||||        |||||| |||| |||||||| | |||||||| |||    
T  44118878 aaaatgcaaacttataatcattataacatacatacattataaaattgaacatatttgcaaaaatattacacaaaaagagcaagattttctcacttaggca 44118977  T
Q  417 ttatatcaaacaccttatgtgc 438  Q
    ||  |||||||||||| |||||    
T  44118978 tttcatcaaacaccttttgtgc 44118999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 390 - 477
Target Start/End: Original strand, 20495067 - 20495154
Alignment:
Q  390 aaaaagcaagatctcctcacttatgcattatatcaaacaccttatgtgcattctaaattaggagcataattagtgttatttgaacatc 477  Q
    |||||||||||| |||||||||| |||||  |||||||||||||||||||||  ||| ||  |||| ||||||||||| || ||||||    
T  20495067 aaaaagcaagatttcctcacttaggcatttcatcaaacaccttatgtgcatttcaaaatactagcacaattagtgttaattcaacatc 20495154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 498
Target Start/End: Original strand, 21551296 - 21551388
Alignment:
Q  406 tcacttatgcattatatcaaacaccttatgtgcattctaaattaggagcataattagtgttatttgaacatctaaagggctacattgtaccta 498  Q
    ||||||| |||||  ||||||||||||  |||||||| ||||||  |||| | |||||||||||| ||||||||||   ||||||||||||||    
T  21551296 tcacttaggcatttcatcaaacaccttgagtgcattccaaattactagcacagttagtgttatttcaacatctaaacaactacattgtaccta 21551388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 498
Target Start/End: Original strand, 21552342 - 21552434
Alignment:
Q  406 tcacttatgcattatatcaaacaccttatgtgcattctaaattaggagcataattagtgttatttgaacatctaaagggctacattgtaccta 498  Q
    ||||||| |||||  ||||||||||||  |||||||| ||||||  |||| | |||||||||||| ||||||||||   ||||||||||||||    
T  21552342 tcacttaggcatttcatcaaacaccttgagtgcattccaaattactagcacagttagtgttatttcaacatctaaacaactacattgtaccta 21552434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 18701179 - 18701248
Alignment:
Q  96 aatcaaccctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggc 165  Q
    ||||| |||||||| |||  ||| ||| ||||||||||  ||||| ||||||||||||||||||||||||    
T  18701179 aatcagccctactgtctacgatgcctctgccccctgcgatgcctggcaatctgatacgtaagggcagggc 18701248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 317 - 373
Target Start/End: Original strand, 20494994 - 20495050
Alignment:
Q  317 aaaatccaagcttataataattataacatatatactttataaaattgaagatatttg 373  Q
    ||||| ||| |||||||| ||||||||||| |||| ||||||||||||| |||||||    
T  20494994 aaaatgcaaacttataatcattataacatacatacattataaaattgaacatatttg 20495050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 306
Target Start/End: Original strand, 20494848 - 20494887
Alignment:
Q  267 tttatataacataccacattatgtcattcttcaaacttgc 306  Q
    ||||| ||||||||||||||||||||||| ||||||||||    
T  20494848 tttatgtaacataccacattatgtcattcatcaaacttgc 20494887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 306
Target Start/End: Original strand, 44118735 - 44118774
Alignment:
Q  267 tttatataacataccacattatgtcattcttcaaacttgc 306  Q
    ||||| ||||||||||||||||||||||| ||||||||||    
T  44118735 tttatgtaacataccacattatgtcattcatcaaacttgc 44118774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 18701080 - 18701126
Alignment:
Q  17 tcatagaaataccaaaatgtacggaatatgtcataattatacatcac 63  Q
    |||||||||||| |||||||||| || |||||||||| |||||||||    
T  18701080 tcatagaaatactaaaatgtacgaaacatgtcataataatacatcac 18701126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 9e-50; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 31387733 - 31387568
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaatatgtcataattatacatcacagtcaaaaagtacatnnnnnnngcctaatcacaatcaacc 103  Q
    |||||| | ||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |       ||||||||||||||||||    
T  31387733 atgtcggaaaatgtcatagaaatatcaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacgtaaaaaa-gcctaatcacaatcaacc 31387635  T
Q  104 ctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggcaacca 170  Q
    || |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  31387634 ctgctgcctagcatgcctcggccccctgcgccgcctggcaatctgatacgtaagggcagggcgacca 31387568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 42463548 - 42463705
Alignment:
Q  13 aatatcatagaaataccaaaatgtacggaatatgtcataattatacatcacagtcaaaaagtacatnnnnnnngcctaatcacaatcaaccctactgcct 112  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||       |||||||| ||||||||| | | ||||    
T  42463548 aatatcatagaaataccaaaatgtacgaaacatgtcataattatacatcacagtgaaaaagtacataaaaaaagcctaatcgcaatcaaccatgcggcct 42463647  T
Q  113 agcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggcaacca 170  Q
    |||||| |||||| ||||||||||||||||||||| ||||||||||||||||| ||||    
T  42463648 agcatgcctcggctccctgcgccgcctgacaatctaatacgtaagggcagggcgacca 42463705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 4911852 - 4912018
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaatatgtcataattatacatcacagtcaaaaagtacatnnnnnnngcctaatcacaatcaacc 103  Q
    |||||| | ||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||       ||||||||||||||||||    
T  4911852 atgtcggaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacaatcaaaaagtacataaaaaaagcctaatcacaatcaacc 4911951  T
Q  104 ctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggcaacca 170  Q
     | |||||||| ||| ||| ||||||||||||||||| ||||||||||  |||||||||||| ||||    
T  4911952 atgctgcctagtatgcctcagccccctgcgccgcctggcaatctgatatataagggcagggcgacca 4912018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 169 - 306
Target Start/End: Original strand, 42057775 - 42057912
Alignment:
Q  169 catagcataaaaatccaagcaagtaacatgtaacatatcaataattaaacttaggcattcattcaaatccacacttacaatcattcaacaactta-gcat 267  Q
    |||||||||||||||||| ||| |||||||||||||||||| ||| ||| |||| ||||||| |||||||||||||| || |||||||||||||| ||||    
T  42057775 catagcataaaaatccaaccaaataacatgtaacatatcaaaaatgaaatttagacattcatacaaatccacacttagaa-cattcaacaacttaggcat 42057873  T
Q  268 ttatataacataccacattatgtcattcttcaaacttgc 306  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  42057874 ttatataacataccacattatgttattcttcaaacttgc 42057912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 27105940 - 27106108
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaatatgtcataattatacatcacagtcaaaaagtacatnnnnnnn--gcctaatcacaatcaa 101  Q
    |||||| | ||| ||||||||||||||||||||||| || ||||||||||||||  ||||||||||||| |||||         ||||||||||||||||    
T  27105940 atgtcggaaaatgtcatagaaataccaaaatgtacgaaacatgtcataattatatgtcacagtcaaaaaatacataaaaaaaaagcctaatcacaatcaa 27106039  T
Q  102 ccctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggcaacca 170  Q
    || | |||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||| ||||    
T  27106040 ccatgctgcctagcatgcctcggccccctacgccgcctgacaatctgatacataagggcagggcgacca 27106108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 4 - 165
Target Start/End: Original strand, 46192209 - 46192370
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaatatgtcataattatacatcacagtcaaaaagtacatnnnnnnngcctaatcacaatcaacc 103  Q
    |||| ||| ||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||       | ||||||| |||||| |    
T  46192209 atgttgaaaaatgtcatacaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaattacataaaaaaagtctaatcataatcaaac 46192308  T
Q  104 ctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggc 165  Q
     | |||||||| ||| ||||||||||| || |||||||||||||||||| |||||| |||||    
T  46192309 gtgctgcctagaatgcctcggccccctacgtcgcctgacaatctgatacataaggggagggc 46192370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 15291587 - 15291664
Alignment:
Q  86 gcctaatcacaatcaaccctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagg 163  Q
    ||||||||| |||||||| |||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||    
T  15291587 gcctaatcataatcaaccttactgcctagcatgcctcggccctctgcgccgcctggcaatctgatacgtaagggcagg 15291664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 317 - 477
Target Start/End: Original strand, 42464798 - 42464958
Alignment:
Q  317 aaaatccaagcttataataattataacatatatactttataaaattgaagatatttgnnnnnnnnttacacgaaaaaagcaagatctcctcacttatgca 416  Q
    ||||| ||| |||||||| ||||||||||| |||| ||||||||||||| |||||||        || ||| ||||||||||||| | |||||||| |||    
T  42464798 aaaatgcaaacttataattattataacatacatacattataaaattgaacatatttgcaaaaatatttcacaaaaaaagcaagattttctcacttaggca 42464897  T
Q  417 ttatatcaaacaccttatgtgcattctaaattaggagcataattagtgttatttgaacatc 477  Q
    ||  |||||||||||||||||||||  ||| ||  |||| ||||||||||| || ||||||    
T  42464898 tttcatcaaacaccttatgtgcatttcaaaatactagcacaattagtgttaattcaacatc 42464958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 317 - 467
Target Start/End: Original strand, 15292252 - 15292401
Alignment:
Q  317 aaaatccaagcttataataattataacatatatactttataaaattgaagatatttgnnnnnnnnttacacgaaaaaagcaagatctcctcacttatgca 416  Q
    ||||| ||| |||||||| ||||||||||| |||| ||||||||||||| |||||||        |||||| |||||||||| || | |||||||| |||    
T  15292252 aaaatgcaaacttataatcattataacatacatacattataaaattgaacatatttgcaaaaaaattacac-aaaaaagcaatattttctcacttaggca 15292350  T
Q  417 ttatatcaaacaccttatgtgcattctaaattaggagcataattagtgtta 467  Q
    ||  ||||||||||||| ||||||| |||| ||  |||| |||||||||||    
T  15292351 tttcatcaaacaccttaagtgcattttaaaatactagcacaattagtgtta 15292401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 317 - 477
Target Start/End: Original strand, 42058098 - 42058257
Alignment:
Q  317 aaaatccaagcttataataattataacatatatactttataaaattgaagatatttgnnnnnnnnttacacgaaaaaagcaagatctcctcacttatgca 416  Q
    ||||| ||| |||||||| ||||||||||| |||| ||||||||||||| |||||||        |||||| |||||||||| || | |||||||| |||    
T  42058098 aaaatgcaaacttataatcattataacatacatacattataaaattgaacatatttgcaataaaattacac-aaaaaagcaatattttctcacttaggca 42058196  T
Q  417 ttatatcaaacaccttatgtgcattctaaattaggagcataattagtgttatttgaacatc 477  Q
    ||  ||||||||||||| |||||||  ||| ||  |||| ||||||||||| || ||||||    
T  42058197 tttcatcaaacaccttaagtgcatttcaaaatactagcacaattagtgttaattcaacatc 42058257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 165
Target Start/End: Complemental strand, 18243077 - 18242998
Alignment:
Q  86 gcctaatcacaatcaaccctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggc 165  Q
    ||||||| | ||||| |||| ||||||| | || ||| ||||||||||||||||| |||||||||| |||||||||||||    
T  18243077 gcctaataataatcagccctgctgcctaccctgcctctgccccctgcgccgcctggcaatctgataagtaagggcagggc 18242998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 15291508 - 15291554
Alignment:
Q  17 tcatagaaataccaaaatgtacggaatatgtcataattatacatcac 63  Q
    |||||||||||  ||||||||||||| ||||||||||||||||||||    
T  15291508 tcatagaaataaaaaaatgtacggaacatgtcataattatacatcac 15291554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 188 - 257
Target Start/End: Original strand, 46200497 - 46200566
Alignment:
Q  188 caagtaacatgtaacatatcaataattaaacttaggcattcattcaaatccacacttacaatcattcaac 257  Q
    |||||||||||||||||||||  ||||  ||||||||||||||  |||| || ||||| |||||||||||    
T  46200497 caagtaacatgtaacatatcacaaattttacttaggcattcataaaaattcaaacttagaatcattcaac 46200566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 13706712 - 13706656
Alignment:
Q  317 aaaatccaagcttataataattataacatatatactttataaaattgaagatatttg 373  Q
    ||||||||  ||||||||||||||||||||||||| |||||| ||| || |||||||    
T  13706712 aaaatccatccttataataattataacatatatacattataagatttaacatatttg 13706656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 18240065 - 18240009
Alignment:
Q  317 aaaatccaagcttataataattataacatatatactttataaaattgaagatatttg 373  Q
    ||||| ||| |||||||| ||||||||||| |||| ||||||||||||| |||||||    
T  18240065 aaaatgcaaacttataatcattataacatacatacattataaaattgaatatatttg 18240009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 317 - 373
Target Start/End: Original strand, 46200638 - 46200694
Alignment:
Q  317 aaaatccaagcttataataattataacatatatactttataaaattgaagatatttg 373  Q
    ||||||||| ||| ||||||||||||||||||||| |||||| ||| || |||||||    
T  46200638 aaaatccaaccttttaataattataacatatatacattataagatttaacatatttg 46200694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 476
Target Start/End: Complemental strand, 18239993 - 18239906
Alignment:
Q  389 aaaaaagcaagatctcctcacttatgcattatatcaaacaccttatgtgcattctaaattaggagcataattagtgttatttgaacat 476  Q
    ||||| ||||||| | |||||||| |||||  |||||||||||||||||||||  ||| ||  |||| ||||||||||| || |||||    
T  18239993 aaaaacgcaagattttctcacttaggcatttcatcaaacaccttatgtgcatttcaaaatactagcacaattagtgttaattcaacat 18239906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 306
Target Start/End: Complemental strand, 18240212 - 18240173
Alignment:
Q  267 tttatataacataccacattatgtcattcttcaaacttgc 306  Q
    ||||| ||||||||||||||||||||||| ||||||||||    
T  18240212 tttatgtaacataccacattatgtcattcatcaaacttgc 18240173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 306
Target Start/End: Original strand, 27108741 - 27108780
Alignment:
Q  267 tttatataacataccacattatgtcattcttcaaacttgc 306  Q
    ||||| ||||||||||||||||||||||| ||||||||||    
T  27108741 tttatgtaacataccacattatgtcattcatcaaacttgc 27108780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 306
Target Start/End: Original strand, 42464661 - 42464700
Alignment:
Q  267 tttatataacataccacattatgtcattcttcaaacttgc 306  Q
    ||||| ||||||||||||||||||||||| ||||||||||    
T  42464661 tttatgtaacataccacattatgtcattcatcaaacttgc 42464700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 165
Target Start/End: Complemental strand, 50914962 - 50914923
Alignment:
Q  126 cccctgcgccgcctgacaatctgatacgtaagggcagggc 165  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  50914962 cccctgcgccgcctgacaatttgataagtaagggcagggc 50914923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 267 - 305
Target Start/End: Complemental strand, 31386083 - 31386045
Alignment:
Q  267 tttatataacataccacattatgtcattcttcaaacttg 305  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  31386083 tttatgtaacataccacattatgtcattcatcaaacttg 31386045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 257
Target Start/End: Complemental strand, 13706852 - 13706783
Alignment:
Q  188 caagtaacatgtaacatatcaataattaaacttaggcattcattcaaatccacacttacaatcattcaac 257  Q
    |||||||||||||||||||||  ||||  |||||| |||||||  |||| || ||||| |||||||||||    
T  13706852 caagtaacatgtaacatatcacaaattttacttagacattcataaaaattcaaacttagaatcattcaac 13706783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 404 - 519
Target Start/End: Original strand, 140466 - 140581
Alignment:
Q  404 cctcacttatgcattatatcaaacaccttatgtgcattctaaattaggagcataattagtgttatttgaacatctaaagggctacattgtacctacattg 503  Q
    |||||||||| |||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  140466 cctcacttatacattttatcaaacaccttatgtgcattttaaattaagagcataattagtgttatttgaacatttaaagggctacattgtacctacattg 140565  T
Q  504 tctctaaacaacaatt 519  Q
    |||| |||||||||||    
T  140566 tctcaaaacaacaatt 140581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0916 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: scaffold0916
Description:

Target: scaffold0916; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 389 - 533
Target Start/End: Complemental strand, 766 - 623
Alignment:
Q  389 aaaaaagcaagatctcctcacttatgcattatatcaaacaccttatgtgcattctaaattaggagcataattagtgttatttgaacatctaaagggctac 488  Q
    ||||||||||||| | |||| ||| |||||  ||||||||||||| |||||||||||||||  |||| |||||||||||||||||||||||||   ||||    
T  766 aaaaaagcaagattttctcatttaggcatttcatcaaacaccttaagtgcattctaaattactagcacaattagtgttatttgaacatctaaacaactac 667  T
Q  489 attgtacctacattgtctctaaacaacaattccagcataaacaat 533  Q
    |||||| ||||| |  |||||||||||||||  ||||||||||||    
T  666 attgtaactacacttactctaaacaacaatt-tagcataaacaat 623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0916; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 842 - 786
Alignment:
Q  317 aaaatccaagcttataataattataacatatatactttataaaattgaagatatttg 373  Q
    ||||| ||| |||||||| |||||||||||||||| ||||||||||||| |||||||    
T  842 aaaatgcaaacttataatcattataacatatatacattataaaattgaacatatttg 786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 424 - 533
Target Start/End: Original strand, 86482 - 86591
Alignment:
Q  424 aaacaccttatgtgcattctaaattaggagcataattagtgttatttgaacatctaaagggctacattgtacctacattgtctctaaacaacaattccag 523  Q
    |||||||||| |||||||||||||||  |||| |||||||||||||||||||||||||   |||||||||  ||||| |  |||||||||||||||| ||    
T  86482 aaacaccttaagtgcattctaaattactagcacaattagtgttatttgaacatctaaacaactacattgtgtctacacttactctaaacaacaattctag 86581  T
Q  524 cataaacaat 533  Q
    ||||||||||    
T  86582 cataaacaat 86591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 86 - 170
Target Start/End: Original strand, 2965 - 3049
Alignment:
Q  86 gcctaatcacaatcaaccctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggcaacca 170  Q
    ||||||||| ||||||||||  ||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  2965 gcctaatcataatcaaccctgttgcctagcacgcctcggccccctgcgccgcctggcaatctgatacgtaagggcagggcgacca 3049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 2890 - 2923
Alignment:
Q  30 aaaatgtacggaatatgtcataattatacatcac 63  Q
    ||||||||||||| ||||||||||||||||||||    
T  2890 aaaatgtacggaacatgtcataattatacatcac 2923  T

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Target: scaffold0184 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 389 - 466
Target Start/End: Original strand, 28180 - 28257
Alignment:
Q  389 aaaaaagcaagatctcctcacttatgcattatatcaaacaccttatgtgcattctaaattaggagcataattagtgtt 466  Q
    ||||||||||||| | |||||||| |||||  |||||||||||||||||||||  ||| ||  |||| ||||||||||    
T  28180 aaaaaagcaagattttctcacttaggcatttcatcaaacaccttatgtgcatttcaaaatactagcacaattagtgtt 28257  T

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Target: scaffold0078 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 389 - 466
Target Start/End: Complemental strand, 44664 - 44587
Alignment:
Q  389 aaaaaagcaagatctcctcacttatgcattatatcaaacaccttatgtgcattctaaattaggagcataattagtgtt 466  Q
    ||||||||||||| | |||||||| |||||  |||||||||||||||||||||  ||| ||  |||| ||||||||||    
T  44664 aaaaaagcaagattttctcacttaggcatttcatcaaacaccttatgtgcatttcaaaatactagcacaattagtgtt 44587  T

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Target: scaffold0688 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 165
Target Start/End: Complemental strand, 5552 - 5473
Alignment:
Q  86 gcctaatcacaatcaaccctactgcctagcatgtctcggccccctgcgccgcctgacaatctgatacgtaagggcagggc 165  Q
    ||||||| | ||||| |||| ||||||| | || ||| ||||||||||||||||  |||||| ||| |||||||||||||    
T  5552 gcctaataataatcagccctgctgcctaccttgcctctgccccctgcgccgcctagcaatctaataagtaagggcagggc 5473  T

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Target: scaffold1813 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold1813
Description:

Target: scaffold1813; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 317 - 373
Target Start/End: Original strand, 331 - 387
Alignment:
Q  317 aaaatccaagcttataataattataacatatatactttataaaattgaagatatttg 373  Q
    |||||||||  |||||||||||||| ||||||||| |||||| ||| || |||||||    
T  331 aaaatccaactttataataattatagcatatatacattataagatttaacatatttg 387  T

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