View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0925_low_120 (Length: 241)

Name: NF0925_low_120
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0925_low_120
NF0925_low_120
[»] chr5 (2 HSPs)
chr5 (1-151)||(35956131-35956281)
chr5 (174-222)||(35956620-35956668)


Alignment Details
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 35956131 - 35956281
Alignment:
1 caataatattttaaacggttgaacaagaagaaaagaatnnnnnnnngctagagatatactcatttgaaatgaccactgtgaagtttttgttgtctcgaac 100  Q
    ||||| ||||||||||| ||||||||||||||||| ||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35956131 caatagtattttaaacgtttgaacaagaagaaaaggataaaaaaaagctagagatatactcatttgaaatgaccactgtgaagtttttgttgtctcgaac 35956230  T
101 aagaacactagagagaaattcgcatggttggtactgaagtcatcaggaaaa 151  Q
    |||||  |||||||||||||||||||||||||||||||||| |||||||||    
35956231 aagaatgctagagagaaattcgcatggttggtactgaagtcgtcaggaaaa 35956281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 35956620 - 35956668
Alignment:
174 tcaaactaaaataagcaaaagttcacataaataagtgtttagagaatct 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
35956620 tcaaactaaaataagcaaaagttcacataaataagtgtttagagaatct 35956668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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