View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_low_121 (Length: 240)
Name: NF0925_low_121
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_121 |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 13614576 - 13614815
Alignment:
| Q |
1 |
tgtcaggctgtccaatattacttaataataagttgttaaagagacaaaggcaagtagaaaatttgaagatgcttgatgataacaaagaaagtactaccca |
100 |
Q |
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| T |
13614576 |
tgtcaggctgtccaatattacttaataataagttgttaaagagacaaaggcaagtagaaaatttgaagatgcttgatgataacaaagaaagtactaccca |
13614675 |
T |
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| Q |
101 |
ataccaatcaacttcctgcatccacaaagttctaaagcgtcactttggattttcaatttttcgaaagcgagaagattcaattggtttattgttgccttca |
200 |
Q |
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| T |
13614676 |
ataccaatcaacttcctgcatccacaaagttctaaagcgtcactttggattttcaatttttcgaaagcgagaagattcaattggtttattgttgccttca |
13614775 |
T |
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| Q |
201 |
ttgtctcatttttcatatttgcaatttcttgacataagtt |
240 |
Q |
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| T |
13614776 |
ttgtctcatttttcatatttgcaatttcttgacataagtt |
13614815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 240
Target Start/End: Original strand, 31246811 - 31247045
Alignment:
| Q |
3 |
tcaggctgtccaatattacttaataataagttgttaaagagacaaaggcaagtagaaaatttgaagatgcttgatgataacaaagaaagtactacccaat |
102 |
Q |
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| T |
31246811 |
tcaggctgtccaaatttacttaataataagatgttagagagacaaaggcaaaatgaacatttggagatgcttgatattaa---agaatgtactactcaat |
31246907 |
T |
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| Q |
103 |
accaatcaacttcctgcatccacaaagttctaaagcgtcactttggattttcaatttttcgaaagcgagaagattcaattggtttattgttgccttcatt |
202 |
Q |
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| T |
31246908 |
accaaccaacatccttcatctacaaagttctaaagccgcactttccattttctttttttcgaaaacgcgaagattcggttggtttattgttgccttcgtt |
31247007 |
T |
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| Q |
203 |
gtctcatttttcatatttgcaatttcttgacataagtt |
240 |
Q |
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| T |
31247008 |
gtcttgtctgtcatgtctgcaatatcttgacctaagtt |
31247045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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