View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_low_124 (Length: 232)
Name: NF0925_low_124
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_124 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 4891381 - 4891224
Alignment:
| Q |
1 |
gtttaatttttccataatgactattgatgtgattaaattaagttaccaccttttgtttcccaatttaagagattgatgttccaatttatcatagaacaag |
100 |
Q |
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| T |
4891381 |
gtttaatttttccataatgactattgatgtgattaaattaagttaccaccttttgtttcacaatttaagagattgatgttccaatttatcatagaacaag |
4891282 |
T |
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| Q |
101 |
acatgctttcgtatcgtctttatagcacggtttctagtttctggtcaatattcttcga |
158 |
Q |
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| T |
4891281 |
acttgctttcgtatcctctttatagcacggtttctagtttctggtcaatttacttcga |
4891224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 4916247 - 4916155
Alignment:
| Q |
1 |
gtttaatttttccataatgactattgatgtgattaaattaagttaccaccttttgtttcccaatttaagagattgatgttccaatttatcata |
93 |
Q |
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|||||||||||||||||| ||||||||| | ||||||| ||| || ||||||||| || |||||| |||||||| | |||||||||| |||| |
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| T |
4916247 |
gtttaatttttccataataactattgatattattaaatcaagctaacaccttttgcttaacaatttcagagattggtattccaatttagcata |
4916155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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