View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_low_13 (Length: 613)
Name: NF0925_low_13
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 6e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 2289422 - 2289242
Alignment:
| Q |
9 |
caagaaaatttaacactaagagaaattcaaatgaagaaacttgaatagtaagagaaatgcaaatataaaagagaagggggacagtttcgttgaatcttgt |
108 |
Q |
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| T |
2289422 |
caagaaaatttaacactaagagaaattcaaatgaagaaacttgaatagtaagagaaatgcaaatataaaagagaagggggacagtttcgttgaatcttgt |
2289323 |
T |
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| Q |
109 |
taa-aaaatattattttattgaatccattattgaataatagtcttaacccagcagatatgaacggtagaaaagaaattatc |
188 |
Q |
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| T |
2289322 |
taaaaaaatactattttattgaatccattattgaataatagtcttaacccagcagacatgaacggtagaaaagaaattatc |
2289242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 5e-70; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 354 - 516
Target Start/End: Complemental strand, 4797054 - 4796893
Alignment:
| Q |
354 |
tgctgtcatattcattgtgacaaatgattccatccaatccatgaaaggagggaggcagaactcaaaacagagtgtgtagcatatatgataacataactcc |
453 |
Q |
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| T |
4797054 |
tgctgtcatattcattgtcacaaatgattccatccaatccatgaaaggagggagacagaactcaaaagagagtgtgtagcatatatgataacataactcc |
4796955 |
T |
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| Q |
454 |
atcatttccattatttctatcaacaagagagttaacattacaaatcaaatattaacacataaa |
516 |
Q |
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| T |
4796954 |
atcatttccattatttctatgaacaagagag-taacattacaaatcaaacattaacacataaa |
4796893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 210 - 341
Target Start/End: Complemental strand, 4791865 - 4791734
Alignment:
| Q |
210 |
caaaggcattgagtggtggaattcaatgatgaagacaaggataggaataagaaataattccccgttgatgttggaagatggattgatccaatggatgatg |
309 |
Q |
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| T |
4791865 |
caaacgcattgagtggtggacttcaatgatgaagacgaggataggaataagaaataattccccgttgatgttggaagatggattgatccaatggatgatg |
4791766 |
T |
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| Q |
310 |
tgagggatcgacactctggaaaggaaccagag |
341 |
Q |
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| T |
4791765 |
tgagggaccgacaccctggaaaggaaccagag |
4791734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 354 - 471
Target Start/End: Original strand, 4788796 - 4788913
Alignment:
| Q |
354 |
tgctgtcatattcattgtgacaaatgattccatccaatccatgaaaggagggaggcagaactcaaaacagagtgtgtagcatatatgataacataactcc |
453 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4788796 |
tgctgtcatattcattgtcacaaatgattccatccaatccatgaaaggagggagacagaactcaaaacagagtgtgtagcatatatgataacataactcc |
4788895 |
T |
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| Q |
454 |
atcatttccattatttct |
471 |
Q |
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| T |
4788896 |
atcatttccattgtttct |
4788913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 354 - 464
Target Start/End: Complemental strand, 4791529 - 4791419
Alignment:
| Q |
354 |
tgctgtcatattcattgtgacaaatgattccatccaatccatgaaaggagggaggcagaactcaaaacagagtgtgtagcatatatgataacataactcc |
453 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4791529 |
tgctgtcatattcattgtcacaaatgattccatccaatccatgaaaggagggagacagaactcaaaacagagtgtgtagcatatatgataacacaactcc |
4791430 |
T |
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| Q |
454 |
atcatttccat |
464 |
Q |
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||||||||||| |
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| T |
4791429 |
atcatttccat |
4791419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 243 - 343
Target Start/End: Complemental strand, 4797368 - 4797265
Alignment:
| Q |
243 |
gacaaggataggaataagaaataattccccgttgatgttggaagatggattgatccaatggatgatgtgagggat---cgacactctggaaaggaaccag |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
4797368 |
gacaaggataggaataagaaataattccccgttgatgttggaagatggattgatccaatggatgatgtgagggatcgacgacactctagaaaggaaccag |
4797269 |
T |
|
| Q |
340 |
agac |
343 |
Q |
| |
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|||| |
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| T |
4797268 |
agac |
4797265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 322
Target Start/End: Original strand, 4788530 - 4788572
Alignment:
| Q |
280 |
ttggaagatggattgatccaatggatgatgtgagggatcgaca |
322 |
Q |
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| T |
4788530 |
ttggaagatgggttgatccaatggatgatgcgagggatggaca |
4788572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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