View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0925_low_130 (Length: 226)

Name: NF0925_low_130
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0925_low_130
NF0925_low_130
[»] chr4 (1 HSPs)
chr4 (1-125)||(9500605-9500729)


Alignment Details
Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 9500729 - 9500605
Alignment:
Q  1 gccagtgatacatccaaacacagtatttatcaatgtagcaaataggttggagaacagaaaattcaactatggtcttccatacaccctagaacctagtcaa 100  Q
    ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9500729 gccagtgatacttccaaacatagtatttatcattgtagcaaataggttggagaacagaaaattcaactatggtcttccatacaccctagaacctagtcaa 9500630  T
Q  101 gtttcactttagctgaagggtggag 125  Q
    |||||||||||||||||||||||||    
T  9500629 gtttcactttagctgaagggtggag 9500605  T

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