View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0925_low_131 (Length: 226)

Name: NF0925_low_131
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0925_low_131
NF0925_low_131
[»] chr5 (6 HSPs)
chr5 (129-226)||(38816728-38816818)
chr5 (150-225)||(19820428-19820503)
chr5 (150-214)||(22013364-22013428)
chr5 (1-45)||(23539927-23539971)
chr5 (165-224)||(21137654-21137713)
chr5 (168-225)||(21191090-21191147)
[»] scaffold0819 (1 HSPs)
scaffold0819 (1-45)||(53-97)
[»] chr7 (8 HSPs)
chr7 (1-45)||(11662267-11662311)
chr7 (150-224)||(27944991-27945065)
chr7 (1-45)||(831480-831524)
chr7 (1-45)||(1196660-1196704)
chr7 (1-45)||(34958723-34958767)
chr7 (1-45)||(3288627-3288671)
chr7 (1-45)||(13256855-13256899)
chr7 (150-195)||(40132024-40132069)
[»] chr4 (7 HSPs)
chr4 (1-45)||(24046326-24046370)
chr4 (1-45)||(15747403-15747447)
chr4 (1-45)||(2583995-2584039)
chr4 (1-45)||(4830004-4830048)
chr4 (1-45)||(4833299-4833343)
chr4 (1-45)||(13447707-13447751)
chr4 (165-225)||(23293020-23293080)
[»] chr3 (11 HSPs)
chr3 (1-45)||(10952577-10952621)
chr3 (1-43)||(10833155-10833197)
chr3 (1-45)||(10953506-10953550)
chr3 (3-45)||(34851149-34851191)
chr3 (150-214)||(8842280-8842344)
chr3 (165-225)||(28917966-28918026)
chr3 (14-45)||(18893867-18893898)
chr3 (14-45)||(18898160-18898191)
chr3 (165-224)||(24205076-24205135)
chr3 (151-225)||(32429414-32429488)
chr3 (159-203)||(10335342-10335386)
[»] chr2 (5 HSPs)
chr2 (1-45)||(21072535-21072579)
chr2 (150-214)||(33519736-33519800)
chr2 (1-45)||(41300776-41300820)
chr2 (165-225)||(4332891-4332951)
chr2 (165-225)||(18276486-18276546)
[»] chr1 (6 HSPs)
chr1 (1-41)||(28313509-28313549)
chr1 (165-225)||(40917716-40917776)
chr1 (166-225)||(398799-398858)
chr1 (173-225)||(6427323-6427375)
chr1 (163-225)||(10572623-10572685)
chr1 (163-203)||(48040518-48040558)
[»] chr6 (9 HSPs)
chr6 (6-45)||(29415403-29415442)
chr6 (169-226)||(10294076-10294133)
chr6 (165-225)||(5000660-5000720)
chr6 (150-225)||(853893-853968)
chr6 (150-225)||(30866178-30866253)
chr6 (150-203)||(8365575-8365628)
chr6 (165-225)||(7938081-7938141)
chr6 (165-225)||(9107404-9107464)
chr6 (165-225)||(16766662-16766722)
[»] scaffold0306 (1 HSPs)
scaffold0306 (149-225)||(13349-13425)
[»] scaffold0152 (1 HSPs)
scaffold0152 (149-225)||(21902-21978)
[»] scaffold0053 (1 HSPs)
scaffold0053 (165-225)||(8763-8823)
[»] scaffold0021 (1 HSPs)
scaffold0021 (1-45)||(147783-147827)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-37)||(391492-391528)
[»] chr8 (4 HSPs)
chr8 (150-214)||(25192392-25192456)
chr8 (159-225)||(926822-926888)
chr8 (167-225)||(29510338-29510396)
chr8 (168-225)||(22651944-22652001)
[»] scaffold0475 (1 HSPs)
scaffold0475 (165-224)||(3281-3340)
[»] scaffold0223 (1 HSPs)
scaffold0223 (150-225)||(20122-20197)
[»] scaffold0007 (1 HSPs)
scaffold0007 (165-224)||(225303-225362)
[»] scaffold0003 (1 HSPs)
scaffold0003 (165-214)||(241559-241608)


Alignment Details
Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 129 - 226
Target Start/End: Complemental strand, 38816818 - 38816728
Alignment:
Q  129 taattgaacggtaaccatatactatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatcg 226  Q
    ||||||||||||||||||||||||||||| || ||||||||| |||       |||||||||||||| ||||||| |||||||||| |||||||||||    
T  38816818 taattgaacggtaaccatatactatgaagcactaatacggactccg-------cacggatactgacacgccgacaccgctaataatttgagaaaatcg 38816728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 19820503 - 19820428
Alignment:
Q  150 ctatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 225  Q
    |||||||| ||| |||||||||||||||||| |||||| |||||||  |||||| |||||||||| ||||||||||    
T  19820503 ctatgaagcacggatacggacaccggacacgacacggacactgacactccgacaccgctaataatttgagaaaatc 19820428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 22013364 - 22013428
Alignment:
Q  150 ctatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataat 214  Q
    |||||||| ||| |||||||||||||||||| |||||| ||||||| |||||||  |||||||||    
T  22013364 ctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacacagctaataat 22013428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 23539927 - 23539971
Alignment:
Q  1 ctctcagtttctatttttccaacctattgtaacctccaaaatatt 45  Q
    |||| |||||||||||||||||||||||||||||||| |||||||    
T  23539927 ctcttagtttctatttttccaacctattgtaacctcccaaatatt 23539971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 21137654 - 21137713
Alignment:
Q  165 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaat 224  Q
    |||||||||||||||  |||||| ||||||| ||||||| || ||||||| |||||||||    
T  21137654 acggacaccggacacaacacggacactgacacgccgacatcggtaataatctgagaaaat 21137713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 21191147 - 21191090
Alignment:
Q  168 gacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 225  Q
    ||||||||||||| |||||| ||||||| |||||||  ||||||||| ||| ||||||    
T  21191147 gacaccggacacgacacggacactgacatgccgacacagctaataatttgaaaaaatc 21191090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0819 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0819
Description:

Target: scaffold0819; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 53 - 97
Alignment:
Q  1 ctctcagtttctatttttccaacctattgtaacctccaaaatatt 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  53 ctctcagtttctatttttccaacctattgtaacctccaaaatatt 97  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11662267 - 11662311
Alignment:
Q  1 ctctcagtttctatttttccaacctattgtaacctccaaaatatt 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  11662267 ctctcagtttctatttttccaacctattgtaacctccaaaatatt 11662311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 27944991 - 27945065
Alignment:
Q  150 ctatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaat 224  Q
    |||||||| ||| |||||||||||||||||| |||||| ||||||| ||||||| | |||||||| |||||||||    
T  27944991 ctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacaccactaataatttgagaaaat 27945065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 831524 - 831480
Alignment:
Q  1 ctctcagtttctatttttccaacctattgtaacctccaaaatatt 45  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  831524 ctctcagtttctatttttccaacctattgtaacctcccaaatatt 831480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 1196704 - 1196660
Alignment:
Q  1 ctctcagtttctatttttccaacctattgtaacctccaaaatatt 45  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  1196704 ctctcagtttctatttttccaacctattgtaacctcccaaatatt 1196660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 34958723 - 34958767
Alignment:
Q  1 ctctcagtttctatttttccaacctattgtaacctccaaaatatt 45  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  34958723 ctctcagtttctatttttccaacctattgtaacctcccaaatatt 34958767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3288671 - 3288627
Alignment:
Q  1 ctctcagtttctatttttccaacctattgtaacctccaaaatatt 45  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||    
T  3288671 ctctcagtttctattttcccaacctattgtaacctcccaaatatt 3288627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13256855 - 13256899
Alignment:
Q  1 ctctcagtttctatttttccaacctattgtaacctccaaaatatt 45  Q
    |||| |||||||||||||||||||||||||||||||  |||||||    
T  13256855 ctcttagtttctatttttccaacctattgtaacctctcaaatatt 13256899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 40132069 - 40132024
Alignment:
Q  150 ctatgaagaacgaatacggacaccggacacggcacggatactgaca 195  Q
    |||||||| ||| ||| ||||||||||||||||||||| |||||||    
T  40132069 ctatgaagtacggatatggacaccggacacggcacggacactgaca 40132024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 24046370 - 24046326
Alignment:
Q  1 ctctcagtttctatttttccaacctattgtaacctccaaaatatt 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  24046370 ctctcagtttctatttttccaacctattgtaacctccaaaatatt 24046326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 15747447 - 15747403
Alignment:
Q  1 ctctcagtttctatttttccaacctattgtaacctccaaaatatt 45  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  15747447 ctctcagtttctatttttccaacctattgtaacctcccaaatatt 15747403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 2584039 - 2583995
Alignment:
Q  1 ctctcagtttctatttttccaacctattgtaacctccaaaatatt 45  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||    
T  2584039 ctctcagtttctattttcccaacctattgtaacctcccaaatatt 2583995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4830048 - 4830004
Alignment:
Q  1 ctctcagtttctatttttccaacctattgtaacctccaaaatatt 45  Q
    |||| |||||||||||||||||||||||||||||||| |||||||    
T  4830048 ctcttagtttctatttttccaacctattgtaacctcccaaatatt 4830004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4833343 - 4833299
Alignment:
Q  1 ctctcagtttctatttttccaacctattgtaacctccaaaatatt 45  Q
    |||| |||||||||||||||||||||||||||||||| |||||||    
T  4833343 ctcttagtttctatttttccaacctattgtaacctcccaaatatt 4833299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13447707 - 13447751
Alignment:
Q  1 ctctcagtttctatttttccaacctattgtaacctccaaaatatt 45  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||    
T  13447707 ctctcagtttctattttcccaacctattgtaacctcccaaatatt 13447751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 23293080 - 23293020
Alignment:
Q  165 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 225  Q
    |||||||||||||||| |||||| | ||||| |||||||  ||||||||| ||| ||||||    
T  23293080 acggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatc 23293020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 10952621 - 10952577
Alignment:
Q  1 ctctcagtttctatttttccaacctattgtaacctccaaaatatt 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  10952621 ctctcagtttctatttttccaacctattgtaacctccaaaatatt 10952577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 10833197 - 10833155
Alignment:
Q  1 ctctcagtttctatttttccaacctattgtaacctccaaaata 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  10833197 ctctcagtttctatttttccaacctattgtaacctccaaaata 10833155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 10953550 - 10953506
Alignment:
Q  1 ctctcagtttctatttttccaacctattgtaacctccaaaatatt 45  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||    
T  10953550 ctctcaatttctatttttacaacctattgtaacctccaaaatatt 10953506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 34851191 - 34851149
Alignment:
Q  3 ctcagtttctatttttccaacctattgtaacctccaaaatatt 45  Q
    ||||||||||||||| ||||||||||||||||||| |||||||    
T  34851191 ctcagtttctattttcccaacctattgtaacctcccaaatatt 34851149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 8842280 - 8842344
Alignment:
Q  150 ctatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataat 214  Q
    |||||||| ||| |||||||||||||| ||| |||||| | ||||| ||||||| ||||||||||    
T  8842280 ctatgaagcacggatacggacaccggatacgacacggaaattgacatgccgacaccgctaataat 8842344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 28917966 - 28918026
Alignment:
Q  165 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 225  Q
    |||||||||||||||| |||||| ||||||| |||||||  ||||||||| ||| ||||||    
T  28917966 acggacaccggacacgacacggaaactgacacgccgacatagctaataatttgaaaaaatc 28918026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 45
Target Start/End: Original strand, 18893867 - 18893898
Alignment:
Q  14 tttttccaacctattgtaacctccaaaatatt 45  Q
    ||||||||||||||||||||||||||||||||    
T  18893867 tttttccaacctattgtaacctccaaaatatt 18893898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 45
Target Start/End: Original strand, 18898160 - 18898191
Alignment:
Q  14 tttttccaacctattgtaacctccaaaatatt 45  Q
    ||||||||||||||||||||||||||||||||    
T  18898160 tttttccaacctattgtaacctccaaaatatt 18898191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 24205135 - 24205076
Alignment:
Q  165 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaat 224  Q
    |||||||||||||||| |||||| ||||||| |||||||  | ||||||| |||||||||    
T  24205135 acggacaccggacacgacacggacactgacacgccgacacggataataatttgagaaaat 24205076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 32429488 - 32429414
Alignment:
Q  151 tatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 225  Q
    ||||||| ||| |||||||||||||||||  |||| | | |||||  ||||||||||||||||| | ||||||||    
T  32429488 tatgaagcacgtatacggacaccggacacaacacgaacattgacactccgacaacgctaataatttaagaaaatc 32429414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 10335386 - 10335342
Alignment:
Q  159 acgaatacggacaccggacacggcacggatactgacaagccgaca 203  Q
    ||||| |||||||||||||||| |||||| ||||||| |||||||    
T  10335386 acgaacacggacaccggacacgacacggacactgacacgccgaca 10335342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 21072579 - 21072535
Alignment:
Q  1 ctctcagtttctatttttccaacctattgtaacctccaaaatatt 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  21072579 ctctcagtttctatttttccaacctattgtaacctccaaaatatt 21072535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 33519736 - 33519800
Alignment:
Q  150 ctatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataat 214  Q
    |||||||| ||| |||||||||||||||||| | ||||||||||||  |||||| ||||||||||    
T  33519736 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 33519800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 41300820 - 41300776
Alignment:
Q  1 ctctcagtttctatttttccaacctattgtaacctccaaaatatt 45  Q
    |||||||||||||||||||||| |||||||||||||| |||||||    
T  41300820 ctctcagtttctatttttccaatctattgtaacctcccaaatatt 41300776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 4332891 - 4332951
Alignment:
Q  165 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 225  Q
    |||||||||||||||||||| |||||| ||| |||||||  | ||||||| || |||||||    
T  4332891 acggacaccggacacggcacagatacttacatgccgacactgataataatttgggaaaatc 4332951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 18276486 - 18276546
Alignment:
Q  165 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 225  Q
    ||||||||||||||||  || || ||||| | ||||||| |||||||||| ||||||||||    
T  18276486 acggacaccggacacgatacagacactgatatgccgacaccgctaataatttgagaaaatc 18276546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 28313509 - 28313549
Alignment:
Q  1 ctctcagtttctatttttccaacctattgtaacctccaaaa 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  28313509 ctctcagtttctatttttccaacctattgtaacctccaaaa 28313549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 40917716 - 40917776
Alignment:
Q  165 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 225  Q
    |||||||||||||||| |||||||||||||| |||||||  ||||||||| ||| ||||||    
T  40917716 acggacaccggacacgacacggatactgacacgccgacacagctaataatttgaaaaaatc 40917776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 225
Target Start/End: Complemental strand, 398858 - 398799
Alignment:
Q  166 cggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 225  Q
    ||||||||||||||| |||||| ||||||| ||||||| |||||||||| ||| ||||||    
T  398858 cggacaccggacacgacacggacactgacacgccgacaccgctaataatttgaaaaaatc 398799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 6427323 - 6427375
Alignment:
Q  173 cggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 225  Q
    ||||||||||||||| ||||||| ||| ||| |||||||||| ||||||||||    
T  6427323 cggacacggcacggacactgacacgccaacaccgctaataatttgagaaaatc 6427375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 225
Target Start/End: Complemental strand, 10572685 - 10572623
Alignment:
Q  163 atacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 225  Q
    |||||||||||||||||| || | | ||||||| ||||||| | |||||||| ||||||||||    
T  10572685 atacggacaccggacacgacatgaacactgacacgccgacaccactaataatttgagaaaatc 10572623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 48040558 - 48040518
Alignment:
Q  163 atacggacaccggacacggcacggatactgacaagccgaca 203  Q
    |||||||||||||||||| |||||| ||||||| |||||||    
T  48040558 atacggacaccggacacgacacggacactgacacgccgaca 48040518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 29415442 - 29415403
Alignment:
Q  6 agtttctatttttccaacctattgtaacctccaaaatatt 45  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  29415442 agtttctatttttccaacctattgtaacctcccaaatatt 29415403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 10294076 - 10294133
Alignment:
Q  169 acaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatcg 226  Q
    |||||||||||| |||||||||||||| ||||| | |||||||||| ||||| |||||    
T  10294076 acaccggacacgacacggatactgacatgccgataccgctaataatttgagataatcg 10294133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 5000720 - 5000660
Alignment:
Q  165 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 225  Q
    |||||||||||||| | |||||||||||||| | ||||| ||||||||||  |||||||||    
T  5000720 acggacaccggacatgacacggatactgacacgtcgacaccgctaataattcgagaaaatc 5000660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 853968 - 853893
Alignment:
Q  150 ctatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 225  Q
    |||||||  ||| |||||||||||||||||| ||||||| |||||| |||||||   |||||||| ||| ||||||    
T  853968 ctatgaatcacggatacggacaccggacacgacacggatgctgacacgccgacacaactaataatttgaaaaaatc 853893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 30866253 - 30866178
Alignment:
Q  150 ctatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 225  Q
    |||||||| |||||||||||||||||||| | ||| || || ||||  || ||| |||||||||| ||||||||||    
T  30866253 ctatgaagtacgaatacggacaccggacatgacactgacaccgacacaccaacaccgctaataatttgagaaaatc 30866178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 8365628 - 8365575
Alignment:
Q  150 ctatgaagaacgaatacggacaccggacacggcacggatactgacaagccgaca 203  Q
    |||||||| ||| ||||||||||| |||||| |||||| ||||||| |||||||    
T  8365628 ctatgaagcacggatacggacaccagacacgacacggacactgacacgccgaca 8365575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 7938081 - 7938141
Alignment:
Q  165 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 225  Q
    |||||||||||||||| || ||| ||||||| |||||||  ||||||||| ||| ||||||    
T  7938081 acggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatc 7938141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 9107464 - 9107404
Alignment:
Q  165 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 225  Q
    |||||||||||||||| |||||| ||| ||| |||||||  ||||||||| ||| ||||||    
T  9107464 acggacaccggacacgacacggacactaacacgccgacacagctaataatttgaaaaaatc 9107404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 16766662 - 16766722
Alignment:
Q  165 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 225  Q
    |||||||||||||||| || ||| ||||||| |||||||  ||||||||| ||| ||||||    
T  16766662 acggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatc 16766722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 13349 - 13425
Alignment:
Q  149 actatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 225  Q
    ||||||||| ||| |||||||||||||| | | |||||| ||||||| |||||||   |||||||| ||||||||||    
T  13349 actatgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatc 13425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 21978 - 21902
Alignment:
Q  149 actatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 225  Q
    ||||||||| ||| |||||||||||||| | | |||||| ||||||| |||||||   |||||||| ||||||||||    
T  21978 actatgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatc 21902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 8763 - 8823
Alignment:
Q  165 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 225  Q
    |||||||||||||||| |||||| ||||||| |||||||  ||||||||| ||| ||||||    
T  8763 acggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatc 8823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 147783 - 147827
Alignment:
Q  1 ctctcagtttctatttttccaacctattgtaacctccaaaatatt 45  Q
    |||| |||||||||||||||||||||||||||||||  |||||||    
T  147783 ctcttagtttctatttttccaacctattgtaacctcacaaatatt 147827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 391492 - 391528
Alignment:
Q  1 ctctcagtttctatttttccaacctattgtaacctcc 37  Q
    |||| ||||||||||||||||||||||||||||||||    
T  391492 ctcttagtttctatttttccaacctattgtaacctcc 391528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 25192456 - 25192392
Alignment:
Q  150 ctatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataat 214  Q
    |||||||| ||||||||||||| ||||||||  ||||| ||||||| |||||||  |||||||||    
T  25192456 ctatgaagcacgaatacggacatcggacacgatacggacactgacacgccgacacagctaataat 25192392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 926888 - 926822
Alignment:
Q  159 acgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 225  Q
    ||||| |||||||||||||||| |||||| ||||||| ||| |||   |||||||| ||||||||||    
T  926888 acgaacacggacaccggacacgacacggacactgacacgccaacactcctaataatttgagaaaatc 926822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 29510396 - 29510338
Alignment:
Q  167 ggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 225  Q
    |||||||||||||| |||||| ||||||| |||||||  ||||||||| ||| ||||||    
T  29510396 ggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatc 29510338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 22651944 - 22652001
Alignment:
Q  168 gacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 225  Q
    ||||||||||||| |||||| ||||||| |||||||  ||||||||| ||| ||||||    
T  22651944 gacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatc 22652001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 3281 - 3340
Alignment:
Q  165 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaat 224  Q
    |||||||||||||||| |||||||||||||| | |||||| ||||| ||| | |||||||    
T  3281 acggacaccggacacgacacggatactgacacgtcgacaatgctaacaattttagaaaat 3340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 225
Target Start/End: Original strand, 20122 - 20197
Alignment:
Q  150 ctatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 225  Q
    |||||||| ||  |||||||||||||||||| |||||| | ||||| |||||||  ||||||||| ||| ||||||    
T  20122 ctatgaagcacagatacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatc 20197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 225362 - 225303
Alignment:
Q  165 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaat 224  Q
    |||||||||||||||| |||||| ||||||| |||||||  | ||||||| |||||||||    
T  225362 acggacaccggacacgacacggacactgacacgccgacacagataataatttgagaaaat 225303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 241559 - 241608
Alignment:
Q  165 acggacaccggacacggcacggatactgacaagccgacaacgctaataat 214  Q
    |||||||||||||||| |||||| ||||||| |||||||  |||||||||    
T  241559 acggacaccggacacgacacggacactgacacgccgacacagctaataat 241608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 223 times since January 2019
Visitors: 6702