View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0925_low_138 (Length: 214)

Name: NF0925_low_138
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0925_low_138
NF0925_low_138
[»] chr7 (24 HSPs)
chr7 (8-121)||(18873307-18873420)
chr7 (8-116)||(15168122-15168230)
chr7 (8-120)||(14422930-14423043)
chr7 (8-125)||(12709835-12709951)
chr7 (8-125)||(13122906-13123022)
chr7 (8-125)||(13743656-13743772)
chr7 (8-116)||(16009523-16009631)
chr7 (8-112)||(10895795-10895900)
chr7 (8-125)||(12590635-12590751)
chr7 (8-125)||(13007379-13007495)
chr7 (8-114)||(16677240-16677348)
chr7 (8-114)||(17651476-17651584)
chr7 (61-125)||(21230951-21231015)
chr7 (61-116)||(11382871-11382926)
chr7 (61-116)||(11389348-11389403)
chr7 (61-117)||(20311051-20311107)
chr7 (53-116)||(13679485-13679548)
chr7 (62-117)||(2971254-2971309)
chr7 (62-117)||(20906461-20906516)
chr7 (62-116)||(11311059-11311113)
chr7 (81-122)||(831628-831669)
chr7 (81-122)||(1196808-1196849)
chr7 (81-122)||(34958578-34958619)
chr7 (60-116)||(46625961-46626017)
[»] chr5 (12 HSPs)
chr5 (8-121)||(22751088-22751201)
chr5 (8-125)||(38144528-38144645)
chr5 (8-116)||(28370055-28370163)
chr5 (8-116)||(19512332-19512441)
chr5 (8-121)||(23528578-23528690)
chr5 (52-116)||(18407944-18408008)
chr5 (61-125)||(22438738-22438803)
chr5 (52-116)||(23111200-23111264)
chr5 (62-117)||(19236900-19236955)
chr5 (64-117)||(22461158-22461211)
chr5 (64-117)||(22467782-22467835)
chr5 (61-125)||(42961566-42961630)
[»] chr3 (20 HSPs)
chr3 (8-116)||(14762758-14762866)
chr3 (8-114)||(20247791-20247897)
chr3 (8-114)||(38310802-38310908)
chr3 (8-116)||(9534274-9534382)
chr3 (8-114)||(24192902-24193009)
chr3 (8-117)||(23370505-23370615)
chr3 (39-125)||(41455089-41455174)
chr3 (8-117)||(24933828-24933936)
chr3 (8-125)||(16801459-16801575)
chr3 (55-116)||(18929239-18929300)
chr3 (52-116)||(17240513-17240577)
chr3 (62-117)||(13302240-13302295)
chr3 (62-117)||(13323787-13323842)
chr3 (62-117)||(12033444-12033499)
chr3 (62-117)||(13312896-13312951)
chr3 (62-117)||(17131732-17131787)
chr3 (62-117)||(51301589-51301644)
chr3 (43-117)||(10389443-10389517)
chr3 (43-117)||(10414532-10414606)
chr3 (43-117)||(10421202-10421276)
[»] scaffold0029 (1 HSPs)
scaffold0029 (8-125)||(111828-111946)
[»] scaffold0026 (2 HSPs)
scaffold0026 (8-125)||(11842-11959)
scaffold0026 (8-117)||(111632-111741)
[»] chr6 (23 HSPs)
chr6 (8-116)||(23057885-23057993)
chr6 (8-116)||(23839144-23839253)
chr6 (10-125)||(930087-930202)
chr6 (8-125)||(18800383-18800501)
chr6 (8-125)||(29614138-29614256)
chr6 (8-116)||(4477803-4477912)
chr6 (8-117)||(10986180-10986290)
chr6 (8-125)||(12168310-12168426)
chr6 (8-125)||(19287219-19287335)
chr6 (8-125)||(19785861-19785977)
chr6 (8-125)||(19878403-19878519)
chr6 (8-125)||(19884179-19884295)
chr6 (34-117)||(34639986-34640069)
chr6 (34-117)||(34646660-34646743)
chr6 (11-117)||(25469704-25469808)
chr6 (61-125)||(24512835-24512899)
chr6 (8-114)||(21565214-21565321)
chr6 (60-116)||(25397172-25397228)
chr6 (64-116)||(9187498-9187550)
chr6 (60-116)||(19471335-19471391)
chr6 (60-116)||(25348486-25348542)
chr6 (33-117)||(31252394-31252478)
chr6 (60-114)||(25598643-25598697)
[»] chr2 (15 HSPs)
chr2 (8-116)||(19661454-19661562)
chr2 (8-116)||(6483664-6483772)
chr2 (8-116)||(6487131-6487239)
chr2 (8-125)||(26583774-26583890)
chr2 (8-117)||(5706023-5706132)
chr2 (52-116)||(23265133-23265197)
chr2 (52-116)||(23280201-23280265)
chr2 (55-116)||(21908353-21908414)
chr2 (8-114)||(23089057-23089164)
chr2 (60-116)||(24661576-24661632)
chr2 (8-116)||(23101463-23101572)
chr2 (51-114)||(23878997-23879060)
chr2 (62-117)||(10577-10632)
chr2 (62-117)||(25180929-25180984)
chr2 (45-117)||(26885166-26885237)
[»] chr8 (14 HSPs)
chr8 (8-117)||(44477569-44477678)
chr8 (8-117)||(44492727-44492836)
chr8 (8-125)||(23866562-23866678)
chr8 (8-114)||(8727735-8727842)
chr8 (8-125)||(17054538-17054654)
chr8 (8-116)||(18614218-18614327)
chr8 (52-116)||(23482053-23482117)
chr8 (61-125)||(14056555-14056619)
chr8 (60-116)||(39364919-39364975)
chr8 (62-116)||(29643386-29643440)
chr8 (61-122)||(25111976-25112037)
chr8 (62-117)||(24320670-24320725)
chr8 (60-116)||(21931696-21931752)
chr8 (61-125)||(27940843-27940907)
[»] scaffold0924 (1 HSPs)
scaffold0924 (12-125)||(742-856)
[»] scaffold0247 (1 HSPs)
scaffold0247 (8-125)||(11287-11405)
[»] scaffold0154 (1 HSPs)
scaffold0154 (8-125)||(30803-30921)
[»] chr4 (12 HSPs)
chr4 (15-125)||(8045824-8045933)
chr4 (12-125)||(11848058-11848177)
chr4 (43-117)||(53483687-53483760)
chr4 (61-117)||(15408139-15408195)
chr4 (60-116)||(8834895-8834951)
chr4 (60-116)||(13888641-13888697)
chr4 (33-114)||(14486632-14486713)
chr4 (60-116)||(15245215-15245271)
chr4 (60-111)||(22724691-22724742)
chr4 (8-117)||(27906211-27906321)
chr4 (81-122)||(15747551-15747592)
chr4 (60-116)||(15308120-15308176)
[»] scaffold0058 (1 HSPs)
scaffold0058 (8-125)||(238-354)
[»] chr1 (12 HSPs)
chr1 (8-116)||(20437024-20437133)
chr1 (8-125)||(41111982-41112098)
chr1 (52-116)||(32651563-32651627)
chr1 (61-116)||(19663517-19663572)
chr1 (52-116)||(18712790-18712854)
chr1 (60-116)||(20805320-20805376)
chr1 (61-116)||(11158093-11158148)
chr1 (60-114)||(10811785-10811839)
chr1 (62-117)||(20851132-20851187)
chr1 (62-117)||(20857759-20857814)
chr1 (62-117)||(21706276-21706331)
chr1 (62-117)||(21710818-21710873)
[»] scaffold0025 (1 HSPs)
scaffold0025 (8-114)||(14398-14505)
[»] scaffold1773 (1 HSPs)
scaffold1773 (12-124)||(1129-1240)
[»] scaffold0006 (1 HSPs)
scaffold0006 (12-124)||(50130-50241)
[»] scaffold0553 (1 HSPs)
scaffold0553 (8-117)||(10195-10305)
[»] scaffold0544 (1 HSPs)
scaffold0544 (8-117)||(1525-1635)
[»] scaffold0117 (2 HSPs)
scaffold0117 (8-125)||(1889-2007)
scaffold0117 (8-125)||(8566-8684)
[»] scaffold0090 (1 HSPs)
scaffold0090 (8-125)||(18115-18233)
[»] scaffold0456 (2 HSPs)
scaffold0456 (34-121)||(904-991)
scaffold0456 (34-121)||(8049-8136)
[»] scaffold0796 (2 HSPs)
scaffold0796 (8-122)||(1727-1840)
scaffold0796 (8-122)||(5750-5863)
[»] scaffold0129 (1 HSPs)
scaffold0129 (8-123)||(45268-45383)
[»] scaffold0222 (1 HSPs)
scaffold0222 (52-116)||(16811-16875)
[»] scaffold0107 (1 HSPs)
scaffold0107 (61-125)||(40523-40587)
[»] scaffold0004 (1 HSPs)
scaffold0004 (52-116)||(116887-116951)
[»] scaffold0124 (1 HSPs)
scaffold0124 (61-116)||(34276-34331)
[»] scaffold0310 (1 HSPs)
scaffold0310 (61-125)||(17643-17708)
[»] scaffold0461 (1 HSPs)
scaffold0461 (52-116)||(8-72)
[»] scaffold0146 (1 HSPs)
scaffold0146 (52-116)||(13623-13687)
[»] scaffold0020 (1 HSPs)
scaffold0020 (52-116)||(101928-101992)
[»] scaffold0019 (1 HSPs)
scaffold0019 (61-117)||(135473-135529)
[»] scaffold0235 (1 HSPs)
scaffold0235 (63-125)||(22584-22646)
[»] scaffold0476 (1 HSPs)
scaffold0476 (8-114)||(3295-3402)
[»] scaffold0077 (1 HSPs)
scaffold0077 (8-114)||(3624-3731)
[»] scaffold0815 (1 HSPs)
scaffold0815 (65-125)||(1453-1513)
[»] scaffold0609 (1 HSPs)
scaffold0609 (33-117)||(5857-5941)
[»] scaffold0138 (1 HSPs)
scaffold0138 (60-116)||(12296-12352)
[»] scaffold0317 (1 HSPs)
scaffold0317 (53-116)||(1378-1441)
[»] scaffold0139 (1 HSPs)
scaffold0139 (61-116)||(14997-15052)
[»] scaffold2054 (1 HSPs)
scaffold2054 (28-125)||(680-778)
[»] scaffold0096 (1 HSPs)
scaffold0096 (60-120)||(39503-39563)
[»] scaffold0001 (1 HSPs)
scaffold0001 (45-117)||(493028-493099)
[»] scaffold0790 (1 HSPs)
scaffold0790 (95-130)||(5487-5522)
[»] scaffold0348 (1 HSPs)
scaffold0348 (62-117)||(9336-9391)
[»] scaffold0127 (1 HSPs)
scaffold0127 (62-117)||(10239-10294)
[»] scaffold0023 (1 HSPs)
scaffold0023 (62-117)||(135438-135493)
[»] scaffold1318 (1 HSPs)
scaffold1318 (62-116)||(1913-1967)
[»] scaffold0453 (1 HSPs)
scaffold0453 (33-117)||(10550-10634)
[»] scaffold0335 (1 HSPs)
scaffold0335 (60-116)||(2628-2684)


Alignment Details
Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 18873307 - 18873420
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18873307 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacc 18873406  T
Q  108 cttaccttagtttt 121  Q
    ||||||||||||||    
T  18873407 cttaccttagtttt 18873420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 15168122 - 15168230
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15168122 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 15168221  T
Q  108 cttacctta 116  Q
    |||||||||    
T  15168222 cttacctta 15168230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 14422930 - 14423043
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 106  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14422930 atcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 14423029  T
Q  107 ccttaccttagttt 120  Q
    ||||||||||||||    
T  14423030 ccttaccttagttt 14423043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 12709951 - 12709835
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||||||||||    
T  12709951 atcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcaggaattataaattatgattattgagagatagtctcacc 12709853  T
Q  108 cttaccttagttttgcag 125  Q
    ||||||||||||||||||    
T  12709852 cttaccttagttttgcag 12709835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 13123022 - 13122906
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||||||||||    
T  13123022 atcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcaggaattataaattatgattattgagagatagtctcacc 13122924  T
Q  108 cttaccttagttttgcag 125  Q
    ||||||||||||||||||    
T  13122923 cttaccttagttttgcag 13122906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 13743656 - 13743772
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||||||||||    
T  13743656 atcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcaggaattataaattatgattattgagagatagtctcacc 13743754  T
Q  108 cttaccttagttttgcag 125  Q
    ||||||||||||||||||    
T  13743755 cttaccttagttttgcag 13743772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 16009523 - 16009631
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    |||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16009523 atcatcatcaaaccttaacccacaatttatcttccaaaaccatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacc 16009622  T
Q  108 cttacctta 116  Q
    |||||||||    
T  16009623 cttacctta 16009631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 10895900 - 10895795
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 106  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  10895900 atcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaattttcaaaaattatagattatgattattgagagatagtctcac 10895801  T
Q  107 ccttac 112  Q
    ||||||    
T  10895800 ccttac 10895795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 12590751 - 12590635
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    |||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  12590751 atcatcatcaaaccctaactttcatattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacc 12590653  T
Q  108 cttaccttagttttgcag 125  Q
    ||||||||||||||||||    
T  12590652 cttaccttagttttgcag 12590635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 13007379 - 13007495
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    |||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  13007379 atcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacc 13007477  T
Q  108 cttaccttagttttgcag 125  Q
    ||||||||||||||||||    
T  13007478 cttaccttagttttgcag 13007495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 16677240 - 16677348
Alignment:
Q  8 atcatcatcaaaccctaaccctcaattt-atcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctca 105  Q
    |||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  16677240 atcatcatcaaaccctaacccttaattttatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctca 16677339  T
Q  106 cccttacct 114  Q
    |||||||||    
T  16677340 cccttacct 16677348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 17651476 - 17651584
Alignment:
Q  8 atcatcatcaaaccctaaccctcaattt-atcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctca 105  Q
    |||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  17651476 atcatcatcaaaccctaacccttaattttatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctca 17651575  T
Q  106 cccttacct 114  Q
    |||||||||    
T  17651576 cccttacct 17651584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 21231015 - 21230951
Alignment:
Q  61 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcag 125  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| |||||||    
T  21231015 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgcag 21230951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 11382926 - 11382871
Alignment:
Q  61 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  11382926 caattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11382871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 11389403 - 11389348
Alignment:
Q  61 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  11389403 caattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11389348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 20311107 - 20311051
Alignment:
Q  61 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  20311107 caattttcagaaattatacgttatgattattgagagatagtctcacccttaccttag 20311051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 116
Target Start/End: Original strand, 13679485 - 13679548
Alignment:
Q  53 aattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    |||||| |||||||||| |||||||| || ||||| || || ||||||||||||||||||||||    
T  13679485 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 13679548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 2971254 - 2971309
Alignment:
Q  62 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  2971254 aattttcagaaattataaattatgactattgaaagataatcccacccttaccttag 2971309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 20906516 - 20906461
Alignment:
Q  62 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  20906516 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20906461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 11311059 - 11311113
Alignment:
Q  62 aattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    |||||| ||||||| || | ||| ||||| |||||||||||||||||||||||||    
T  11311059 aatttttagaaattctacactattattattgagagatagtctcacccttacctta 11311113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 831669 - 831628
Alignment:
Q  81 ttatgattatcgagagatagtctcacccttaccttagttttg 122  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  831669 ttataattattgagagttagtctcacccttaccttagttttg 831628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 1196849 - 1196808
Alignment:
Q  81 ttatgattatcgagagatagtctcacccttaccttagttttg 122  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  1196849 ttataattattgagagttagtctcacccttaccttagttttg 1196808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 34958578 - 34958619
Alignment:
Q  81 ttatgattatcgagagatagtctcacccttaccttagttttg 122  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  34958578 ttataattattgagagttagtctcacccttaccttagttttg 34958619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 46625961 - 46626017
Alignment:
Q  60 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    ||||||||| ||||||||| ||||| || || ||||| |||||||||||||| ||||    
T  46625961 tcaattttccgaaattatatattataatcattgagagttagtctcacccttatctta 46626017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 1e-55; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 22751088 - 22751201
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22751088 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacc 22751187  T
Q  108 cttaccttagtttt 121  Q
    ||||||||||||||    
T  22751188 cttaccttagtttt 22751201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 38144645 - 38144528
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38144645 atcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacc 38144546  T
Q  108 cttaccttagttttgcag 125  Q
    ||||||||||||||||||    
T  38144545 cttaccttagttttgcag 38144528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 28370163 - 28370055
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28370163 atcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacc 28370064  T
Q  108 cttacctta 116  Q
    |||||||||    
T  28370063 cttacctta 28370055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 19512332 - 19512441
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 106  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19512332 atcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 19512431  T
Q  107 ccttacctta 116  Q
    ||||||||||    
T  19512432 ccttacctta 19512441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 23528578 - 23528690
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    |||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  23528578 atcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacc 23528676  T
Q  108 cttaccttagtttt 121  Q
    ||||||||||||||    
T  23528677 cttaccttagtttt 23528690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 18408008 - 18407944
Alignment:
Q  52 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  18408008 caattagatcaattttcagaaattatatattatgattattgagagatagtctcacccttacctta 18407944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 22438803 - 22438738
Alignment:
Q  61 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag-ttttgcag 125  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||    
T  22438803 caattttcagaaattatacattatgattattgagagatagtctcacccttaccttagattttgcag 22438738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 23111264 - 23111200
Alignment:
Q  52 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  23111264 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23111200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 19236900 - 19236955
Alignment:
Q  62 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  19236900 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 19236955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 22461158 - 22461211
Alignment:
Q  64 ttttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    ||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  22461158 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22461211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 22467782 - 22467835
Alignment:
Q  64 ttttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    ||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  22467782 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22467835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 42961566 - 42961630
Alignment:
Q  61 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcag 125  Q
    |||||||||||||| ||| ||||| || || ||  | ||| ||||||||||||||||||||||||    
T  42961566 caattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttagttttgcag 42961630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 5e-55; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 14762866 - 14762758
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14762866 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 14762767  T
Q  108 cttacctta 116  Q
    |||||||||    
T  14762766 cttacctta 14762758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 20247897 - 20247791
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  20247897 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacc 20247798  T
Q  108 cttacct 114  Q
    |||||||    
T  20247797 cttacct 20247791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 38310908 - 38310802
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38310908 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaatattcagaaattatagattatgattatcgagagatagtctcacc 38310809  T
Q  108 cttacct 114  Q
    |||||||    
T  38310808 cttacct 38310802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 9534274 - 9534382
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9534274 atcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacc 9534373  T
Q  108 cttacctta 116  Q
    |||||||||    
T  9534374 cttacctta 9534382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 24192902 - 24193009
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 106  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24192902 atcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 24193001  T
Q  107 ccttacct 114  Q
    ||||||||    
T  24193002 ccttacct 24193009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 23370615 - 23370505
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 106  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  23370615 atcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccac 23370516  T
Q  107 ccttaccttag 117  Q
    |||||||||||    
T  23370515 ccttaccttag 23370505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 41455174 - 41455089
Alignment:
Q  39 ttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcag 125  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  41455174 ttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 41455089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 24933936 - 24933828
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    ||||||||||||||||||   |||  |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  24933936 atcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacc 24933838  T
Q  108 cttaccttag 117  Q
    ||||||||||    
T  24933837 cttaccttag 24933828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 16801575 - 16801459
Alignment:
Q  8 atcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 106  Q
    ||||||||||| |||||||| ||||||| |||||| ||| ||| ||||| |||||||||||||||||||||| || |||||||| |||||||||||||||    
T  16801575 atcatcatcaa-ccctaaccttcaattttatcttcaaaagctaagcaatcaggtcaattttcagaaattatatat-atgattattgagagatagtctcac 16801478  T
Q  107 ccttaccttagttttgcag 125  Q
    |||||||||||||||||||    
T  16801477 ccttaccttagttttgcag 16801459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 18929239 - 18929300
Alignment:
Q  55 ttaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    |||| ||||||||||||||||||| || |||||||| |||||||||||||||||||||||||    
T  18929239 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18929300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 17240577 - 17240513
Alignment:
Q  52 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    ||||||| ||||||||||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  17240577 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 17240513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 13302295 - 13302240
Alignment:
Q  62 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    ||||||||||||||| | ||||||||||| || ||||| |||||||||||||||||    
T  13302295 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttag 13302240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 13323842 - 13323787
Alignment:
Q  62 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    ||||||||||||||| | ||||||||||| || ||||| |||||||||||||||||    
T  13323842 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttag 13323787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 12033499 - 12033444
Alignment:
Q  62 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  12033499 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 12033444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 13312951 - 13312896
Alignment:
Q  62 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    |||||||| |||||| | ||||||||||| || ||||| |||||||||||||||||    
T  13312951 aattttcaaaaattacatattatgattattgaaagataatctcacccttaccttag 13312896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 17131732 - 17131787
Alignment:
Q  62 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  17131732 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 17131787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 51301589 - 51301644
Alignment:
Q  62 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    ||||||||||||||| | ||||||||||| |  ||||| |||||||||||||||||    
T  51301589 aattttcagaaattacatattatgattattggaagataatctcacccttaccttag 51301644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 10389517 - 10389443
Alignment:
Q  43 aaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    |||||||| ||||||| | | ||||||||||||||| ||||| || || || ||||| || ||||||||||||||    
T  10389517 aaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatcccacccttaccttag 10389443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 10414606 - 10414532
Alignment:
Q  43 aaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    |||||||| ||||||| | | ||||||||||||||| ||||| || || || ||||| || ||||||||||||||    
T  10414606 aaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatcccacccttaccttag 10414532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 10421276 - 10421202
Alignment:
Q  43 aaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    |||||||| ||||||| | | ||||||||||||||| ||||| || || || ||||| || ||||||||||||||    
T  10421276 aaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatcccacccttaccttag 10421202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 111828 - 111946
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaa-ttttcagaaattatagattatgattatcgagagatagtctcac 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  111828 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaatttttcagaaattatagattatgattattgagagatagtctcac 111927  T
Q  107 ccttaccttagttttgcag 125  Q
    |||||||||||||||||||    
T  111928 ccttaccttagttttgcag 111946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 11959 - 11842
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11959 atcatcatcaaaccctaactctcaatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacc 11860  T
Q  108 cttaccttagttttgcag 125  Q
    ||||||||||||||||||    
T  11859 cttaccttagttttgcag 11842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 111632 - 111741
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  111632 atcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacc 111731  T
Q  108 cttaccttag 117  Q
    ||||||||||    
T  111732 cttaccttag 111741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 23057885 - 23057993
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23057885 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcaggaattatagattatgattatcgagagatagtctcacc 23057984  T
Q  108 cttacctta 116  Q
    |||||||||    
T  23057985 cttacctta 23057993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 23839144 - 23839253
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaa-actatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 106  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23839144 atcatcatcaaaccctaaccctcaatttatcttccaaacactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 23839243  T
Q  107 ccttacctta 116  Q
    ||||||||||    
T  23839244 ccttacctta 23839253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 10 - 125
Target Start/End: Complemental strand, 930202 - 930087
Alignment:
Q  10 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 109  Q
    |||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  930202 catcatcaaaccctaaccctcaatttatttttcaaaactatacaattaggtcaattttcagaaactatagattatgattattgagagatagtctcaccct 930103  T
Q  110 taccttagttttgcag 125  Q
    ||||||||||||||||    
T  930102 taccttagttttgcag 930087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 18800383 - 18800501
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatt-tatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 106  Q
    ||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18800383 atcatcatcaaaccctaaccctcaattctattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 18800482  T
Q  107 ccttaccttagttttgcag 125  Q
    |||||| ||||||||||||    
T  18800483 ccttacattagttttgcag 18800501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 29614256 - 29614138
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatctt-ccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 106  Q
    |||||||||||||||||||||||||||||| || |||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29614256 atcatcatcaaaccctaaccctcaatttatttttccaaaattatgcaactaggtcaattttcagaaattatagattatgattattgagagatagtctcac 29614157  T
Q  107 ccttaccttagttttgcag 125  Q
    |||||||||||||||||||    
T  29614156 ccttaccttagttttgcag 29614138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 4477803 - 4477912
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 106  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4477803 atcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 4477902  T
Q  107 ccttacctta 116  Q
    ||||||||||    
T  4477903 ccttacctta 4477912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 10986290 - 10986180
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 106  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||    
T  10986290 atcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgaaagatagtctcac 10986191  T
Q  107 ccttaccttag 117  Q
    |||||||||||    
T  10986190 ccttaccttag 10986180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 12168310 - 12168426
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    |||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  12168310 atcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacc 12168408  T
Q  108 cttaccttagttttgcag 125  Q
    ||||||||||||||||||    
T  12168409 cttaccttagttttgcag 12168426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 19287219 - 19287335
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    |||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  19287219 atcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacc 19287317  T
Q  108 cttaccttagttttgcag 125  Q
    ||||||||||||||||||    
T  19287318 cttaccttagttttgcag 19287335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 19785977 - 19785861
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    |||||||||||||||||||  ||| ||||| |||||||||||| ||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  19785977 atcatcatcaaaccctaactttcattttattttccaaaactattcaactaggtcaattt-cagaaattatagattatgattattgagagatagtctcacc 19785879  T
Q  108 cttaccttagttttgcag 125  Q
    ||||||||||||||||||    
T  19785878 cttaccttagttttgcag 19785861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 19878403 - 19878519
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    |||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  19878403 atcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacc 19878501  T
Q  108 cttaccttagttttgcag 125  Q
    ||||||||||||||||||    
T  19878502 cttaccttagttttgcag 19878519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 19884179 - 19884295
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    |||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  19884179 atcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacc 19884277  T
Q  108 cttaccttagttttgcag 125  Q
    || |||||||||||||||    
T  19884278 ctaaccttagttttgcag 19884295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 34 - 117
Target Start/End: Complemental strand, 34640069 - 34639986
Alignment:
Q  34 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  34640069 ttattttccaaaactattcaattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttaccttag 34639986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 34 - 117
Target Start/End: Complemental strand, 34646743 - 34646660
Alignment:
Q  34 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    |||| |||||||| ||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  34646743 ttattttccaaaattattcaattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttaccttag 34646660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 25469808 - 25469704
Alignment:
Q  11 atcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccctt 110  Q
    |||||||||||||||   |||  |||| ||||||||| || ||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||    
T  25469808 atcatcaaaccctaattttcatattattttccaaaaccattcaattaggtcaattt-cagaa-ttatagattatgattattgagagatagtctcaccctt 25469711  T
Q  111 accttag 117  Q
    |||||||    
T  25469710 accttag 25469704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 24512899 - 24512835
Alignment:
Q  61 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcag 125  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||| ||||||| |||||||    
T  24512899 caattttcagaaattatatactatgattattgagagatagtctcaccctcaccttagatttgcag 24512835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 21565321 - 21565214
Alignment:
Q  8 atcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatg-attatcgagagatagtctca 105  Q
    |||||||||||||||||||||||||||| ||| || ||   || |||||||||||||||||| ||||||| | |||||  ||||  ||||||||||||||    
T  21565321 atcatcatcaaaccctaaccctcaattttatcctc-aaggttaagcaattaggtcaattttccgaaattaaatattatctattaatgagagatagtctca 21565223  T
Q  106 cccttacct 114  Q
    |||||||||    
T  21565222 cccttacct 21565214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 25397172 - 25397228
Alignment:
Q  60 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||    
T  25397172 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacctta 25397228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 9187498 - 9187550
Alignment:
Q  64 ttttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    ||||||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  9187498 ttttcagaaattatgtattaagattattgagagatagtctcacccttacctta 9187550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 19471391 - 19471335
Alignment:
Q  60 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    ||||||| ||||||||||| |||||||| |||||||| ||| |||||||||||||||    
T  19471391 tcaatttccagaaattatatattatgatcatcgagaggtagcctcacccttacctta 19471335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 25348486 - 25348542
Alignment:
Q  60 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    |||||||||||||||| || | ||| ||||| |||||||||||||||||||||||||    
T  25348486 tcaattttcagaaattctatactattattattgagagatagtctcacccttacctta 25348542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 117
Target Start/End: Original strand, 31252394 - 31252478
Alignment:
Q  33 tttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    ||||||||| | |||||| ||||||| | ||||||||||||||||| ||||| || ||  | ||||| |||||||||||||||||    
T  31252394 tttatcttcaagaactattcaattagattaattttcagaaattatatattataatcattaaaagataatctcacccttaccttag 31252478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 25598643 - 25598697
Alignment:
Q  60 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 114  Q
    |||||||||||||| |||| |||||||| || ||||| |||||||||||||||||    
T  25598643 tcaattttcagaaaatatatattatgatcattgagagttagtctcacccttacct 25598697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 19661562 - 19661454
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19661562 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacc 19661463  T
Q  108 cttacctta 116  Q
    |||||||||    
T  19661462 cttacctta 19661454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 6483664 - 6483772
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6483664 atcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacc 6483763  T
Q  108 cttacctta 116  Q
    |||||||||    
T  6483764 cttacctta 6483772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 6487131 - 6487239
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6487131 atcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacc 6487230  T
Q  108 cttacctta 116  Q
    |||||||||    
T  6487231 cttacctta 6487239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 26583774 - 26583890
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  26583774 atcatcatcaagccctaaccctcaatttattttccaaaactatgcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacc 26583872  T
Q  108 cttaccttagttttgcag 125  Q
    ||||||||||||||||||    
T  26583873 cttaccttagttttgcag 26583890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 5706132 - 5706023
Alignment:
Q  8 atcatcatcaaaccctaaccctca-atttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 106  Q
    ||||||||||||||||||   ||| |||  | ||| |||||||| |||||||||||| |||||| ||||||||||||||||||  |||||||||||||||    
T  5706132 atcatcatcaaaccctaattttcatattatttttcaaaaactattcaattaggtcaa-tttcaggaattatagattatgattaatgagagatagtctcac 5706034  T
Q  107 ccttaccttag 117  Q
    |||||||||||    
T  5706033 ccttaccttag 5706023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 23265133 - 23265197
Alignment:
Q  52 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  23265133 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23265197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 23280201 - 23280265
Alignment:
Q  52 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  23280201 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23280265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 21908353 - 21908414
Alignment:
Q  55 ttaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    |||| ||||||||||||||||||| || |||||||| |||||||||||||||||||||||||    
T  21908353 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 21908414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 23089164 - 23089057
Alignment:
Q  8 atcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatg-attatcgagagatagtctca 105  Q
    |||||||||||||||||||||||||||| ||| || ||   || |||||||||||||||||| ||||||| | |||||  ||||  ||||||||||||||    
T  23089164 atcatcatcaaaccctaaccctcaattttatcctc-aaggttaagcaattaggtcaattttccgaaattaaatattatctattaatgagagatagtctca 23089066  T
Q  106 cccttacct 114  Q
    |||||||||    
T  23089065 cccttacct 23089057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 24661576 - 24661632
Alignment:
Q  60 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||    
T  24661576 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacctta 24661632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 23101572 - 23101463
Alignment:
Q  8 atcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatg-attatcgagagatagtctca 105  Q
    |||||||||||||||||||||||||||| ||| || ||   ||  ||||||||||||||||| ||||||| | |||||  ||||  ||||||||||||||    
T  23101572 atcatcatcaaaccctaaccctcaattttatcctc-aaggttaaacaattaggtcaattttccgaaattacatattatctattaatgagagatagtctca 23101474  T
Q  106 cccttacctta 116  Q
    |||||||||||    
T  23101473 cccttacctta 23101463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 23878997 - 23879060
Alignment:
Q  51 gcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 114  Q
    |||||||||||||||||  ||||||||| || || ||||  |||||||||||||||||||||||    
T  23878997 gcaattaggtcaatttttcgaaattatatataattattaatgagagatagtctcacccttacct 23879060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 10577 - 10632
Alignment:
Q  62 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  10577 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 10632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 25180984 - 25180929
Alignment:
Q  62 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  25180984 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 25180929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 26885166 - 26885237
Alignment:
Q  45 aactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    |||||| | ||||| | ||||||||||||||||| |||| |||||| || ||||| || ||||||||||||||    
T  26885166 aactattccattagattaattttcagaaattatacatta-gattattgaaagataatcccacccttaccttag 26885237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 8e-51; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 44477569 - 44477678
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44477569 atcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacc 44477668  T
Q  108 cttaccttag 117  Q
    ||||||||||    
T  44477669 cttaccttag 44477678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 44492727 - 44492836
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44492727 atcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacc 44492826  T
Q  108 cttaccttag 117  Q
    ||||||||||    
T  44492827 cttaccttag 44492836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 23866562 - 23866678
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||||||||||    
T  23866562 atcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcaggaattataaattatgattattgagagatagtctcacc 23866660  T
Q  108 cttaccttagttttgcag 125  Q
    ||||||||||||||||||    
T  23866661 cttaccttagttttgcag 23866678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 8727842 - 8727735
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 106  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||    
T  8727842 atcatcgtcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagggataatctcac 8727743  T
Q  107 ccttacct 114  Q
    ||||||||    
T  8727742 ccttacct 8727735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 17054538 - 17054654
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    |||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||    
T  17054538 atcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcacc 17054636  T
Q  108 cttaccttagttttgcag 125  Q
    |||||||| |||||||||    
T  17054637 cttaccttggttttgcag 17054654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 18614218 - 18614327
Alignment:
Q  8 atcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 106  Q
    |||| ||| |||||||||  |||||||| |||||| | ||| || ||||| | ||||||||||||||||||| || |||||||| |||||||||||||||    
T  18614218 atcagcataaaaccctaattctcaattttatcttcaagaacaattcaattggatcaattttcagaaattatatatcatgattattgagagatagtctcac 18614317  T
Q  107 ccttacctta 116  Q
    ||||||||||    
T  18614318 ccttacctta 18614327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 23482117 - 23482053
Alignment:
Q  52 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  23482117 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23482053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 14056619 - 14056555
Alignment:
Q  61 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcag 125  Q
    |||||||||||| ||| | | ||| ||||| |||||||||||||||||||||||||| |||||||    
T  14056619 caattttcagaatttacatactattattattgagagatagtctcacccttaccttagatttgcag 14056555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 39364919 - 39364975
Alignment:
Q  60 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    |||||||||||||||| || | ||| ||||| |||||||||||||||||||||||||    
T  39364919 tcaattttcagaaattctatactattattattgagagatagtctcacccttacctta 39364975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 29643440 - 29643386
Alignment:
Q  62 aattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    ||||||||||||||| | ||||||||||| || ||||| ||||||||||||||||    
T  29643440 aattttcagaaattacatattatgattattgaaagataatctcacccttacctta 29643386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 25111976 - 25112037
Alignment:
Q  61 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttg 122  Q
    |||||||||||| ||| | | ||| ||||| |||||||||||||||||||||||||| ||||    
T  25111976 caattttcagaatttacatactattattattgagagatagtctcacccttaccttagatttg 25112037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 24320725 - 24320670
Alignment:
Q  62 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  24320725 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 24320670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 21931696 - 21931752
Alignment:
Q  60 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    ||||||||||||| ||||| ||||| || || ||||| ||| |||||||||||||||    
T  21931696 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacctta 21931752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 27940907 - 27940843
Alignment:
Q  61 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcag 125  Q
    |||||||||||||| ||| ||||| || || ||  | ||| ||||||||||||||||||||||||    
T  27940907 caattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttagttttgcag 27940843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 856 - 742
Alignment:
Q  12 tcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccctt 110  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  856 tcatcaaaccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccctt 757  T
Q  111 accttagttttgcag 125  Q
    |||||||||||||||    
T  756 accttagttttgcag 742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 11287 - 11405
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatt-tatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 106  Q
    ||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11287 atcatcatcaaaccctaaccctcaattctattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 11386  T
Q  107 ccttaccttagttttgcag 125  Q
    |||||||||||||||||||    
T  11387 ccttaccttagttttgcag 11405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 30803 - 30921
Alignment:
Q  8 atcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 106  Q
    |||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30803 atcatcatcaaaccctaatcctcaattttaccttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 30902  T
Q  107 ccttaccttagttttgcag 125  Q
    |||||||||||||||||||    
T  30903 ccttaccttagttttgcag 30921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 8045933 - 8045824
Alignment:
Q  15 tcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 114  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8045933 tcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattt-cagaaattatagattatgattatcgagagatagtctcacccttacct 8045835  T
Q  115 tagttttgcag 125  Q
    |||||||||||    
T  8045834 tagttttgcag 8045824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 11848058 - 11848177
Alignment:
Q  12 tcatcaaaccctaaccctcaatttatcttc------caaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctca 105  Q
    ||||||||||||||||||||||| || ||       ||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  11848058 tcatcaaaccctaaccctcaattgattttaatttttcaaaactatgccactaggtcaattttcaggaattatagattatgattattgagagatagtctca 11848157  T
Q  106 cccttaccttagttttgcag 125  Q
    ||||||||||||||||||||    
T  11848158 cccttaccttagttttgcag 11848177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 53483687 - 53483760
Alignment:
Q  43 aaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    |||||||| ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  53483687 aaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcacccttaccttag 53483760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 15408139 - 15408195
Alignment:
Q  61 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    |||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||    
T  15408139 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttag 15408195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 8834895 - 8834951
Alignment:
Q  60 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  8834895 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 8834951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 13888641 - 13888697
Alignment:
Q  60 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  13888641 tcaattttcagaaattatacattatgatcattgagagttagcctcacccttacctta 13888697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 14486632 - 14486713
Alignment:
Q  33 tttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 114  Q
    ||||||||| | ||| || ||||| | | ||||||||||||||||| |||||||| || ||  |||||||||||||||||||    
T  14486632 tttatcttcaagaacaattcaattcgattaattttcagaaattatatattatgatcattgaaggatagtctcacccttacct 14486713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 15245215 - 15245271
Alignment:
Q  60 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    ||||||||||||||||||| |||| ||| || ||||| ||| |||||||||||||||    
T  15245215 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttacctta 15245271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 22724742 - 22724691
Alignment:
Q  60 tcaattttcagaaattatagattatgattatcgagagatagtctcaccctta 111  Q
    |||||||||||||||| || | ||| ||||| ||||||||||||||||||||    
T  22724742 tcaattttcagaaattctatactattattattgagagatagtctcaccctta 22724691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 27906211 - 27906321
Alignment:
Q  8 atcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 106  Q
    |||| ||||| |||||||  |||||||| |||||| | |||||| | ||||  | ||||||||||||||||| |||||||| || || ||||| || |||    
T  27906211 atcaacatcacaccctaattctcaattttatcttcaagaactattctattatattaattttcagaaattatacattatgatcattgaaagataatcccac 27906310  T
Q  107 ccttaccttag 117  Q
    ||||| |||||    
T  27906311 ccttatcttag 27906321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 15747592 - 15747551
Alignment:
Q  81 ttatgattatcgagagatagtctcacccttaccttagttttg 122  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  15747592 ttataattattgagagttagtctcacccttaccttagttttg 15747551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 15308120 - 15308176
Alignment:
Q  60 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    ||||||||||||||||||| |||| ||| || ||||| ||| |||||||||| ||||    
T  15308120 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttaactta 15308176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 238 - 354
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||    
T  238 atcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcagaaattatagattatggttattgagagatagtctcacc 336  T
Q  108 cttaccttagttttgcag 125  Q
    ||||||||||||||||||    
T  337 cttaccttagttttgcag 354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 20437133 - 20437024
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 106  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20437133 atcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 20437034  T
Q  107 ccttacctta 116  Q
    ||||||||||    
T  20437033 ccttacctta 20437024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 41111982 - 41112098
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    |||||||||||||||||||  |||  |||| || ||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  41111982 atcatcatcaaaccctaactttcatcttatttttcaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacc 41112080  T
Q  108 cttaccttagttttgcag 125  Q
    ||||||||||||||||||    
T  41112081 cttaccttagttttgcag 41112098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 32651563 - 32651627
Alignment:
Q  52 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  32651563 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 32651627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 19663572 - 19663517
Alignment:
Q  61 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  19663572 caattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 19663517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 18712790 - 18712854
Alignment:
Q  52 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    ||||||| ||||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||    
T  18712790 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccatacctta 18712854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 20805320 - 20805376
Alignment:
Q  60 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  20805320 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 20805376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 11158093 - 11158148
Alignment:
Q  61 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    |||||||||||||||||| |||| ||| || ||||| |||||||||||||||||||    
T  11158093 caattttcagaaattatatattaagatcattgagagttagtctcacccttacctta 11158148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 10811839 - 10811785
Alignment:
Q  60 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 114  Q
    |||||||||||||||| || | ||| ||||| |||||||||||||||||||||||    
T  10811839 tcaattttcagaaattctacactattattattgagagatagtctcacccttacct 10811785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 20851187 - 20851132
Alignment:
Q  62 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  20851187 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20851132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 20857814 - 20857759
Alignment:
Q  62 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  20857814 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20857759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 21706276 - 21706331
Alignment:
Q  62 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  21706276 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21706331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 21710818 - 21710873
Alignment:
Q  62 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  21710818 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21710873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 14505 - 14398
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 106  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14505 atcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 14406  T
Q  107 ccttacct 114  Q
    ||||||||    
T  14405 ccttacct 14398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 1129 - 1240
Alignment:
Q  12 tcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccctta 111  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||    
T  1129 tcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcaccctta 1227  T
Q  112 ccttagttttgca 124  Q
    |||||||||||||    
T  1228 ccttagttttgca 1240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 50130 - 50241
Alignment:
Q  12 tcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccctta 111  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||    
T  50130 tcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcaccctta 50228  T
Q  112 ccttagttttgca 124  Q
    |||||||||||||    
T  50229 ccttagttttgca 50241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 10305 - 10195
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 106  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  10305 atcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccac 10206  T
Q  107 ccttaccttag 117  Q
    |||||||||||    
T  10205 ccttaccttag 10195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 1635 - 1525
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 106  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  1635 atcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccac 1536  T
Q  107 ccttaccttag 117  Q
    |||||||||||    
T  1535 ccttaccttag 1525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 2007 - 1889
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaatttt-cagaaattatagattatgattatcgagagatagtctcac 106  Q
    ||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||    
T  2007 atcatcatcaaaccctaaccctcaaattattttccaaaactatacaattaggtcaatttttcagaaattatagattatgattattgagatatagtctcac 1908  T
Q  107 ccttaccttagttttgcag 125  Q
    |||||||||||||||||||    
T  1907 ccttaccttagttttgcag 1889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 8684 - 8566
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaatttt-cagaaattatagattatgattatcgagagatagtctcac 106  Q
    ||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||    
T  8684 atcatcatcaaaccctaaccctcaaattattttccaaaactatacaattaggtcaatttttcagaaattatagattatgattattgagatatagtctcac 8585  T
Q  107 ccttaccttagttttgcag 125  Q
    |||||||||||||||||||    
T  8584 ccttaccttagttttgcag 8566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 18115 - 18233
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 106  Q
    |||||||| ||||| ||||||||||||||| |||| ||| ||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  18115 atcatcattaaaccttaaccctcaatttattttcctaaagctaagcaattaggtcaattttcaaaaattatagattatgattattgagagatagtctcac 18214  T
Q  107 ccttaccttagttttgcag 125  Q
    |||||||||||||||||||    
T  18215 ccttaccttagttttgcag 18233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 904 - 991
Alignment:
Q  34 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagtttt 121  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  904 ttatcttccaagactatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagtttt 991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 8049 - 8136
Alignment:
Q  34 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagtttt 121  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  8049 ttatcttccaagactatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagtttt 8136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0796
Description:

Target: scaffold0796; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 1840 - 1727
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    |||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||    
T  1840 atcatcatcaaaccctaactttcatattattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcacc 1742  T
Q  108 cttaccttagttttg 122  Q
    |||||||||||||||    
T  1741 cttaccttagttttg 1727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 5863 - 5750
Alignment:
Q  8 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 107  Q
    |||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||    
T  5863 atcatcatcaaaccctaactttcatattattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcacc 5765  T
Q  108 cttaccttagttttg 122  Q
    |||||||||||||||    
T  5764 cttaccttagttttg 5750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 45383 - 45268
Alignment:
Q  8 atcatcatcaaaccctaaccctca-atttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 106  Q
    ||||||||||||||||||   ||| |||  | ||| |||||||| |||||||||||| |||||| ||||||||||||||||||| |||||||||||||||    
T  45383 atcatcatcaaaccctaattttcatattatttttcaaaaactattcaattaggtcaa-tttcaggaattatagattatgattattgagagatagtctcac 45285  T
Q  107 ccttaccttagttttgc 123  Q
    ||||||||||| |||||    
T  45284 ccttaccttagatttgc 45268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 16811 - 16875
Alignment:
Q  52 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  16811 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 16875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 40587 - 40523
Alignment:
Q  61 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcag 125  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| |||||||    
T  40587 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgcag 40523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 116887 - 116951
Alignment:
Q  52 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  116887 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 116951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 34331 - 34276
Alignment:
Q  61 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  34331 caattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 34276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 17643 - 17708
Alignment:
Q  61 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag-ttttgcag 125  Q
    |||||||||||||||||| |||||| |||| |||||||||||||||||||||||||| ||||||||    
T  17643 caattttcagaaattatacattatggttattgagagatagtctcacccttaccttagattttgcag 17708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 72 - 8
Alignment:
Q  52 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    ||||||| ||||||||||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  72 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 8  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 13623 - 13687
Alignment:
Q  52 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    ||||||| ||||||||||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  13623 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 13687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 101992 - 101928
Alignment:
Q  52 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    ||||||| ||||||||||| ||||||| | ||||||||| |||||||||||||||||||||||||    
T  101992 caattagatcaattttcaggaattatatactatgattattgagagatagtctcacccttacctta 101928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 135473 - 135529
Alignment:
Q  61 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    |||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||    
T  135473 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttag 135529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 22646 - 22584
Alignment:
Q  63 attttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcag 125  Q
    |||||||||||||||| | ||||||||| |||||||||||||||||||||||| | |||||||    
T  22646 attttcagaaattatatactatgattattgagagatagtctcacccttaccttggatttgcag 22584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 3402 - 3295
Alignment:
Q  8 atcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatg-attatcgagagatagtctca 105  Q
    |||||||||||||||||||||||||||| |||  ||||   || |||||||||||||||||| ||||||| | |||||  ||||  ||||||||||||||    
T  3402 atcatcatcaaaccctaaccctcaattttatcc-ccaaggttaagcaattaggtcaattttccgaaattacatattatctattaatgagagatagtctca 3304  T
Q  106 cccttacct 114  Q
    |||||||||    
T  3303 cccttacct 3295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 3731 - 3624
Alignment:
Q  8 atcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatg-attatcgagagatagtctca 105  Q
    |||||||||||||||||||||||||||| ||| || ||   || |||||||||||||||||| ||||||| | |||||  ||||  ||||||||||||||    
T  3731 atcatcatcaaaccctaaccctcaattttatcctc-aaggttaagcaattaggtcaattttccgaaattacatattatctattaatgagagatagtctca 3633  T
Q  106 cccttacct 114  Q
    |||||||||    
T  3632 cccttacct 3624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 1453 - 1513
Alignment:
Q  65 tttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcag 125  Q
    |||||||||||||| |||| ||| || ||||| ||||||||||||||||||| ||||||||    
T  1453 tttcagaaattatacattaagatcattgagagttagtctcacccttaccttaattttgcag 1513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 117
Target Start/End: Complemental strand, 5941 - 5857
Alignment:
Q  33 tttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    ||||||||| | |||||| ||||||| | ||||||||||||||||| ||||| || || || ||||| || ||||||||||||||    
T  5941 tttatcttcaagaactattcaattagattaattttcagaaattatatattataatcattgaaagataatcccacccttaccttag 5857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 12296 - 12352
Alignment:
Q  60 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  12296 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 12352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 116
Target Start/End: Original strand, 1378 - 1441
Alignment:
Q  53 aattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    |||||| |||||||||| |||||||| || ||||| || || ||||||||||||||||||||||    
T  1378 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 1441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 15052 - 14997
Alignment:
Q  61 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    |||||||||||||||||| |||| ||| || ||||| |||||||||||||||||||    
T  15052 caattttcagaaattatatattaagatcattgagagttagtctcacccttacctta 14997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2054 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 680 - 778
Alignment:
Q  28 ctcaatttatcttccaaaactatgcaattaggtcaatttt-cagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcag 125  Q
    |||||||||| ||| | |||||| |  |||||| |||||| ||||||||||| |||| ||| || || ||||| || ||||||||||||||||||||||    
T  680 ctcaatttattttcaagaactattcttttaggttaatttttcagaaattatatattaagatcattgaaagataatcccacccttaccttagttttgcag 778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 39563 - 39503
Alignment:
Q  60 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttt 120  Q
    ||||||||| ||||||||| |||||||| || ||||| ||| |||||||||||||| ||||    
T  39563 tcaattttctgaaattatatattatgatcattgagagttagcctcacccttacctttgttt 39503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 493099 - 493028
Alignment:
Q  45 aactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    |||||| | ||||| | ||||||||||||||||| |||| |||||| || ||||| |||||||||||||||||    
T  493099 aactattccattagattaattttcagaaattatacatta-gattattgaaagataatctcacccttaccttag 493028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0790 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 130
Target Start/End: Original strand, 5487 - 5522
Alignment:
Q  95 agatagtctcacccttaccttagttttgcagtataa 130  Q
    ||||||||||||||||||||||||||||||| ||||    
T  5487 agatagtctcacccttaccttagttttgcagaataa 5522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 9336 - 9391
Alignment:
Q  62 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  9336 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 9391  T

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Target: scaffold0127 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 10239 - 10294
Alignment:
Q  62 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    ||||||||||||||| | ||||||||||| |  ||||| |||||||||||||||||    
T  10239 aattttcagaaattacatattatgattattggaagataatctcacccttaccttag 10294  T

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Target: scaffold0023 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 135438 - 135493
Alignment:
Q  62 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    ||||||||||||||||| ||||||| ||| || ||||| |||||| ||||||||||    
T  135438 aattttcagaaattatatattatgactattgaaagataatctcacgcttaccttag 135493  T

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Target: scaffold1318 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 1967 - 1913
Alignment:
Q  62 aattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    ||||||||||||||||| ||||||| ||| || ||||| || |||||||||||||    
T  1967 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 1913  T

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Target: scaffold0453 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 117
Target Start/End: Complemental strand, 10634 - 10550
Alignment:
Q  33 tttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 117  Q
    ||||||||| | |||||| | ||||| | ||||||||||||||||| |||| ||| || || ||||| || ||| ||||||||||    
T  10634 tttatcttcaagaactattctattagattaattttcagaaattatacattaagatcattgaaagataatcccacacttaccttag 10550  T

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Target: scaffold0335 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 2684 - 2628
Alignment:
Q  60 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 116  Q
    ||||||||||||| ||||| ||||| || || ||||| ||| |||||||||||||||    
T  2684 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacctta 2628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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