View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0925_low_14 (Length: 599)
Name: NF0925_low_14
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_14 |
 | |
|
| [»] scaffold0024 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 559; Significance: 0; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 1 - 590
Target Start/End: Complemental strand, 30264947 - 30264357
Alignment:
| Q |
1 |
tttgaagatgtaactgagccagtaagtccaagtggacaatacttcaacacccctcccctatgttcatatgtttttggatttttggaattagaaattccaa |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30264947 |
tttgaagatctaactgagccagtaagtccaagtggacaatatttcaacacccctcccctatgttcatatgtttttggatttttggaattagaaattccaa |
30264848 |
T |
|
| Q |
101 |
ttgatgactctcaagctatgtatttgatccaacatttgttcttacctatcaatccacgcttctcctccataatagtacgtacttttt-atgtgttttagt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30264847 |
ttgatgactctcaagctatgtatttgatccaacatttgttcttacctatcaatccacgcttctcctccataatagtacgtacttttttatgtgttttagt |
30264748 |
T |
|
| Q |
200 |
gtttatatttccttacatatctatcatataacaaatattaacatgtgcatgtgcatgcaaccatgtatataggtgagagataaagatggaaatatgaaat |
299 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30264747 |
gtttatatttccttacatatttatcatataacaaatattaacatgtgcatatgcatgcaaccatgtatataggtgagagataaagatggaaatatgaaat |
30264648 |
T |
|
| Q |
300 |
ggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattgaattctatgatcatgattttgatgactatgt |
399 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30264647 |
ggaaaaaagtagaggtaaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattgaattctatgatcaagattttgatgactatgt |
30264548 |
T |
|
| Q |
400 |
gtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattc |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30264547 |
gtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattc |
30264448 |
T |
|
| Q |
500 |
aaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgt |
590 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30264447 |
aaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgt |
30264357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 1 - 590
Target Start/End: Original strand, 30287241 - 30287831
Alignment:
| Q |
1 |
tttgaagatgtaactgagccagtaagtccaagtggacaatacttcaacacccctcccctatgttcatatgtttttggatttttggaattagaaattccaa |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287241 |
tttgaagatctaactgagccagtaagtccaagtggacaatatttcaacacccctcccctatgttcatatgtttttggatttttggaattagaaattccaa |
30287340 |
T |
|
| Q |
101 |
ttgatgactctcaagctatgtatttgatccaacatttgttcttacctatcaatccacgcttctcctccataatagtacgtactttt-tatgtgttttagt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30287341 |
ttgatgactctcaagctatgtatttgatccaacatttgttcttacctatcaatccacgcttctcctccataatagtacgtacttttttatgtgttttagt |
30287440 |
T |
|
| Q |
200 |
gtttatatttccttacatatctatcatataacaaatattaacatgtgcatgtgcatgcaaccatgtatataggtgagagataaagatggaaatatgaaat |
299 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287441 |
gtttatatttccttacatatttatcatataacaaatattaacatgtgcatatgcatgcaaccatgtatataggtgagagataaagatggaaatatgaaat |
30287540 |
T |
|
| Q |
300 |
ggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattgaattctatgatcatgattttgatgactatgt |
399 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30287541 |
ggaaaaaagtagaggtaaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattgaattctatgatcaagattttgatgactatgt |
30287640 |
T |
|
| Q |
400 |
gtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattc |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287641 |
gtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattc |
30287740 |
T |
|
| Q |
500 |
aaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgt |
590 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287741 |
aaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgt |
30287831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 265 - 590
Target Start/End: Complemental strand, 30271576 - 30271251
Alignment:
| Q |
265 |
tatataggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtca |
364 |
Q |
| |
|
||||||||||||||| |||||||| || |||||||||||||| |||||||| || || |||||||| | | |||||| | |||||||||| ||| ||| |
|
|
| T |
30271576 |
tatataggtgagagacaaagatggcaaaatgaaatggaaaaaggtagaggtgaagcctgaagatcatatgcacgttccaatattccctaaaagtgaatca |
30271477 |
T |
|
| Q |
365 |
attgaattctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagt |
464 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||||||||||| | || ||||| |||||| |||||||||| ||||||||||||||| | || || | |
|
|
| T |
30271476 |
attgaattgtatgatcaatattttgatgattatgtgtcaaagattatgatggaaagaacaccacaagacaaaccactttgggaaatacatttaattaaat |
30271377 |
T |
|
| Q |
465 |
atccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatag |
564 |
Q |
| |
|
|||||||||| |||||| || | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
30271376 |
atccaacaagaaatgctaaaggaactttgatattcaaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtctacaaag |
30271277 |
T |
|
| Q |
565 |
agctgatgatccttctcttcctttgt |
590 |
Q |
| |
|
||||||||| |||||||||||||||| |
|
|
| T |
30271276 |
agctgatgacccttctcttcctttgt |
30271251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 265 - 590
Target Start/End: Original strand, 30280613 - 30280938
Alignment:
| Q |
265 |
tatataggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtca |
364 |
Q |
| |
|
|||||||||||||||| ||||||| || |||| ||||||||| |||||| || || |||||||| | ||||||||| | |||||||||| ||| ||| |
|
|
| T |
30280613 |
tatataggtgagagatcaagatggcaaaatgatgtggaaaaaaatagaggcgaagcctgaagatcatatgaaggttccaatattccctaaaagtgaatca |
30280712 |
T |
|
| Q |
365 |
attgaattctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagt |
464 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||||||||||| | || ||||| |||||| |||||||||| ||||||||||| ||| | || || | |
|
|
| T |
30280713 |
attgaattgtatgatcaatattttgatgattatgtgtcaaagattatgatggaaagaacaccacaagacaaaccactttgggaaatgcatttaattaaat |
30280812 |
T |
|
| Q |
465 |
atccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatag |
564 |
Q |
| |
|
||||||||||||||||| || | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
30280813 |
atccaacaagcaatgctaaaggaactttgatattcaaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtctacaaag |
30280912 |
T |
|
| Q |
565 |
agctgatgatccttctcttcctttgt |
590 |
Q |
| |
|
||||||||| |||||||||||||||| |
|
|
| T |
30280913 |
agctgatgacccttctcttcctttgt |
30280938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 265 - 590
Target Start/End: Complemental strand, 30304643 - 30304318
Alignment:
| Q |
265 |
tatataggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtca |
364 |
Q |
| |
|
|||||||||||||||| ||||||| || |||| ||||||||| |||||| || || |||||||| | ||||||||| | |||||||||| ||| ||| |
|
|
| T |
30304643 |
tatataggtgagagatcaagatggcaaaatgatgtggaaaaaaatagaggcgaagcctgaagatcatatgaaggttccaatattccctaaaagtgaatca |
30304544 |
T |
|
| Q |
365 |
attgaattctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagt |
464 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||||||||||| | || ||||| |||||| |||||||||| ||||||||||| ||| | || || | |
|
|
| T |
30304543 |
attgaattgtatgatcaatattttgatgattatgtgtcaaagattatgatggaaagaacaccacaagacaaaccactttgggaaatgcatttaattaaat |
30304444 |
T |
|
| Q |
465 |
atccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatag |
564 |
Q |
| |
|
||||||||||||||||| || | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
30304443 |
atccaacaagcaatgctaaaggaactttgatattcaaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtctacaaag |
30304344 |
T |
|
| Q |
565 |
agctgatgatccttctcttcctttgt |
590 |
Q |
| |
|
|| |||||| |||||||||||||||| |
|
|
| T |
30304343 |
agttgatgacccttctcttcctttgt |
30304318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 422 - 586
Target Start/End: Complemental strand, 30048723 - 30048559
Alignment:
| Q |
422 |
acaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtg |
521 |
Q |
| |
|
|||||| |||| ||||| ||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
30048723 |
acaccacaagataaaccactttgggaaattcatgttatcaattatccaacaaccaatgctgcttgcaccataatattcaaacttcatcatggacttggtg |
30048624 |
T |
|
| Q |
522 |
atggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcct |
586 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30048623 |
atggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcct |
30048559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 422 - 586
Target Start/End: Complemental strand, 30063064 - 30062900
Alignment:
| Q |
422 |
acaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtg |
521 |
Q |
| |
|
|||||| |||| ||||| ||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
30063064 |
acaccacaagataaaccactttgggaaattcatgttatcaattatccaacaaccaatgctgcttgcaccataatattcaaacttcatcatggacttggtg |
30062965 |
T |
|
| Q |
522 |
atggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcct |
586 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30062964 |
atggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcct |
30062900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 30271872 - 30271695
Alignment:
| Q |
1 |
tttgaagatgtaactgagccagtaagtccaagtggacaatacttcaacacccctcccctatgttcatatgtttttggatttttggaattagaaattccaa |
100 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||| | ||||||||| |
|
|
| T |
30271872 |
tttgaatatgtaaccgagccagtaagtccaagtggacaatacttcaacacaccacccctatgttcatatgttttcggatttttggaatcacaaattccaa |
30271773 |
T |
|
| Q |
101 |
ttgatgactctcaagctatgtatttgatccaacatttgttcttacctatcaatccacgcttctcctccataatagtac |
178 |
Q |
| |
|
||||||| |||||| ||||||||||| |||||||| | |||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
30271772 |
ttgatgattctcaaactatgtatttgttccaacatgtcttcttacctatcaatccacgtttctcctccataatggtac |
30271695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 416 - 588
Target Start/End: Complemental strand, 30032483 - 30032311
Alignment:
| Q |
416 |
gaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcac |
515 |
Q |
| |
|
||||| |||||| |||| ||||| ||||||||||| ||| ||||||| |||||||||| ||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
30032483 |
gaaagaacaccacaagataaaccactttgggaaattcatattatcaattatccaacaaccaatgaagcttgcaccataatattcaaacttcatcatgcac |
30032384 |
T |
|
| Q |
516 |
ttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttccttt |
588 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30032383 |
ttggtgacggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttccttt |
30032311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 434 - 586
Target Start/End: Complemental strand, 30228850 - 30228698
Alignment:
| Q |
434 |
aaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctc |
533 |
Q |
| |
|
||||| ||||||||||| ||| ||||||| |||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30228850 |
aaaccactttgggaaattcatattatcaattatccaacaaccaatgctgcttgcaccataatattcaaacttaatcatgcacttggtgatggttactctc |
30228751 |
T |
|
| Q |
534 |
tcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcct |
586 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30228750 |
tcatgagtgctcttctttcttgtcttcaaagagctgatgatccttctcttcct |
30228698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 30304910 - 30304736
Alignment:
| Q |
1 |
tttgaagatgtaactgagccagtaagtccaagtggacaatacttcaacacccctcccctatgttcatatgtttttggatttttggaattagaaattccaa |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||||| || || ||| |||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
30304910 |
tttgaagatgtaacagagccagtaagtccaagtggacaattcttcaatacaccacccttatgttcatatgttttcggatttttagaattagaaattccaa |
30304811 |
T |
|
| Q |
101 |
ttgatgactctcaagctatgtatttgatccaacatttgttcttacctatcaatccacgcttctcctccataatagtac |
178 |
Q |
| |
|
| || ||||||||| | ||||||||| ||||| || ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30304810 |
tggacgactctcaaacaatgtatttgttccaaaat---ttcttacctatcaatccacgcttctcctccataatggtac |
30304736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 30280347 - 30280520
Alignment:
| Q |
1 |
tttgaagatgtaactgagccagtaagtccaagtggacaatacttcaacacccctcccctatgttcatatgtttttggatttttggaattagaaattccaa |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||| || || ||| |||||||||||| ||| |||||||| |||||||||||||||| |
|
|
| T |
30280347 |
tttgaagatctaactgagccagtaagtccaagtggacaattcttcaatacaccacccttatgttcatatg-tttcggatttttagaattagaaattccaa |
30280445 |
T |
|
| Q |
101 |
ttgatgactctcaagctatgtatttgatccaacatttgttcttacctatcaatccacgcttctcctccataatagtac |
178 |
Q |
| |
|
| || ||||||||| | ||||||||| ||||| || ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30280446 |
tggacgactctcaaacaatgtatttgttccaaaat---ttcttacctatcaatccacgcttctcctccataatggtac |
30280520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 429 - 586
Target Start/End: Original strand, 30220209 - 30220366
Alignment:
| Q |
429 |
aagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggtta |
528 |
Q |
| |
|
|||| ||||||||||||||||| ||| | || || |||||||||||||||||| || | |||||||||||||| |||||||||||||||||||| |
|
|
| T |
30220209 |
aagataaacccctttgggaaattcatttgattaaatatccaacaagcaatgctaaaggaactttgatattcaaacttcaccatgcacttggtgatggtta |
30220308 |
T |
|
| Q |
529 |
ctctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcct |
586 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30220309 |
ctctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcct |
30220366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 59 - 167
Target Start/End: Original strand, 30219785 - 30219893
Alignment:
| Q |
59 |
tatgttcatatgtttttggatttttggaattagaaattccaattgatgactctcaagctatgtatttgatccaacatttgttcttacctatcaatccacg |
158 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| ||||||||||||||||| ||| ||||| |||| | || || | ||| | |||||||||||||| |
|
|
| T |
30219785 |
tatgttcatatgtttttgggtttctggaattagctattccaattgatgactcacaaactatgcctttgcttaaagatgtcttccttcctatcaatccacg |
30219884 |
T |
|
| Q |
159 |
cttctcctc |
167 |
Q |
| |
|
|||||||| |
|
|
| T |
30219885 |
tttctcctc |
30219893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 491 - 590
Target Start/End: Original strand, 2311381 - 2311480
Alignment:
| Q |
491 |
ataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgt |
590 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||| ||||| |||||||| |||||||||||||| || | ||||||||||| ||||||||||||| |
|
|
| T |
2311381 |
ataatattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcctttgt |
2311480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 582
Target Start/End: Complemental strand, 29483293 - 29483208
Alignment:
| Q |
497 |
ttcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctct |
582 |
Q |
| |
|
|||||| |||| |||||| |||| ||||| ||| ||||||||||| ||||||| | ||||| |||||||||||||||||||| |
|
|
| T |
29483293 |
ttcaaatttcaccatgcaattggagatggctacaatctcatgggtgtcattctttcgagccttcaaagagctgatgatccttctct |
29483208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 440 - 585
Target Start/End: Complemental strand, 79679 - 79534
Alignment:
| Q |
440 |
ctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgg |
539 |
Q |
| |
|
|||||||| |||||| |||| || |||||||||| ||||| ||| ||| || ||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
79679 |
ctttgggagatacatattattaaatatccaacaaaaaatgcagctggtaccttagtattcaaacttcatcatgcacttggagatggttactctctaatgg |
79580 |
T |
|
| Q |
540 |
gtgctcttctttcttgtcttcatagagctgatgatccttctcttcc |
585 |
Q |
| |
|
|||| |||||||| ||| | | ||||||||| | ||||||||||| |
|
|
| T |
79579 |
gtgcacttctttcatgtttagaaagagctgataacccttctcttcc |
79534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 443 - 549
Target Start/End: Complemental strand, 72612 - 72506
Alignment:
| Q |
443 |
tgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtg |
542 |
Q |
| |
|
|||||||| ||| |||| || |||||||||| ||||| ||| ||| || ||||||||||||||||||||||||| |||||||||||||| ||||| | |
|
|
| T |
72612 |
tgggaaattcatattattaaatatccaacaaaaaatgcagctggtaccttagtattcaaacttcatcatgcacttggagatggttactctctaatgggag |
72513 |
T |
|
| Q |
543 |
ctcttct |
549 |
Q |
| |
|
||||||| |
|
|
| T |
72512 |
ctcttct |
72506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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