View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0925_low_143 (Length: 201)
Name: NF0925_low_143
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_143 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 144; Significance: 6e-76; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 34145504 - 34145345
Alignment:
| Q |
19 |
atgaataattgaatttgctaatttaatgtgcagttatggatagagagattattcgcccatgtgcagcttgcaagcatcttcataggaagtgccaccctac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
34145504 |
atgaataattgaatttgctaatttaatgtgcagcaatggatagagagattattcgcccatgtgcagcttgcaagcatctccataggaagtgccaccttac |
34145405 |
T |
|
| Q |
119 |
ctgtgtcttagctccttactttccaaaggacaacccggagcgtttcatcaaggtacactc |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34145404 |
ctgtgtcttagctccttactttccaaaggacaacccggagcgtttcatcaaggtacactc |
34145345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 24 - 180
Target Start/End: Complemental strand, 34155842 - 34155683
Alignment:
| Q |
24 |
taattgaatttgctaatttaatgtgcagttat---ggatagagagattattcgcccatgtgcagcttgcaagcatcttcataggaagtgccaccctacct |
120 |
Q |
| |
|
|||||||||||| |||||||||||||||| || || ||||||||||||||||| || ||||| ||||||||||| | | | ||||| || | | || |
|
|
| T |
34155842 |
taattgaatttgttaatttaatgtgcagtaataatggcaagagagattattcgcccgtgcgcagcatgcaagcatctccgtcaggagtgcgactcaagct |
34155743 |
T |
|
| Q |
121 |
gtgtcttagctccttactttccaaaggacaacccggagcgtttcatcaaggtacactctg |
180 |
Q |
| |
|
||| | | ||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
34155742 |
gtgaccttgctccttactttccacctgacaacccagagcgtttcatcaaggtacactctg |
34155683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 34140954 - 34140881
Alignment:
| Q |
24 |
taattgaatttgctaatttaatgtgcagttatggatagagagattattcgcccatgtgcagcttgcaagcatct |
97 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||| ||||||||||| |
|
|
| T |
34140954 |
taattgaatttcctaatttaatgtgcagttatggcaaaagagattattcgcctgtgtgcagtgtgcaagcatct |
34140881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 34134582 - 34134509
Alignment:
| Q |
24 |
taattgaatttgcta-atttaatgtgcagttatggatagagagattattcgcccatgtgcagcttgcaagcatc |
96 |
Q |
| |
|
|||||||||||| || ||||||| | ||||||||| ||||||||||||||| |||||||| |||||||||| |
|
|
| T |
34134582 |
taattgaatttgttatatttaatttacagttatggcagaagagattattcgcccgtgtgcagcgtgcaagcatc |
34134509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 584 times since January 2019
Visitors: 6696