View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_low_16 (Length: 528)
Name: NF0925_low_16
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Complemental strand, 48714772 - 48714274
Alignment:
| Q |
1 |
cattataaaagtactaactagctgatggtctttcacccaaacatctataggtctgtcaacattctgagggtcatagggatctccgttgaagaagtcggga |
100 |
Q |
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| T |
48714772 |
cattataaaagtactaactggcagatggtctttcacccaaacatctataggtctgtcaacattccgaggatcatagggatctccgttgaagaagtcggga |
48714673 |
T |
|
| Q |
101 |
accaccacataatacccggttgctgcaaccttgtcggcaaacatccttcacaaaacaattcaacaaaatgtaaaccataaggaatgaaacaaccgattct |
200 |
Q |
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| T |
48714672 |
accaccacataatacccggttgctgcaaccttgtcggcaaacatccttcacaaaacaattcaacgaaatgtaaaccagaaggaatgaaacaaccgattct |
48714573 |
T |
|
| Q |
201 |
tttacaagtgaaaaaaggtagacaggccaaaaagtcaaaatctatttacttcaaatttaattttgacgaagttcattatttacttttgcttatattcaag |
300 |
Q |
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| T |
48714572 |
tttacaagtgaaaaaaggtagacaggccaaaaagtcaaaatctatttacttcaaatttaattttgacgaagttcattatttacttttgcttatattcaag |
48714473 |
T |
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| Q |
301 |
actagagggagcgcttaatatcagcatttcatattgaaaaacgtgagaatttgtaatcatcatcataccttaaaattggggctttatatcctacaaaaca |
400 |
Q |
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| T |
48714472 |
accaaaggaagcgcttagtatcaacatttcatattgaaaaacgtgagaattgataattatcatcataccttaaaattggggctttatatcctacaaaaca |
48714373 |
T |
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| Q |
401 |
aattaagcatgtgaagacaaaaactgttaaacatgtgtagatgcattcaatatatgaaaccatgacctcctcaaaataatcagtcatagataagaagga |
499 |
Q |
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| T |
48714372 |
aattaagcatgtgaagacaaaaactgttaaacatgtgtagatgcattcaatatatgaaaccatgacctcctcaaaataatcagccatagataagaagga |
48714274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 47167993 - 47167782
Alignment:
| Q |
8 |
aaagtactaactagctgatggtctttcacccaaacatctataggtctgtcaacattctgagggtcatagggatctccgttgaagaagtcgggaaccacca |
107 |
Q |
| |
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|||||||||||| | ||||||||||| || |||| |||||||||||||||||||| ||| ||||||||||| || |||||||| || ||||| |||| |
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| T |
47167993 |
aaagtactaactggttgatggtctttactccgaacaagtataggtctgtcaacattctcaggatcatagggatcgccattgaagaaatcaggaacaacca |
47167894 |
T |
|
| Q |
108 |
cataatacccggttgctgcaaccttgtcggcaaacatccttcacaaaacaattcaacaaaatgtaaaccataaggaatgaaacaaccgattcttttacaa |
207 |
Q |
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| T |
47167893 |
cataatacccagttgctgcaaccttgtctgcaaacatccttcac-aaacagatcaacaaaatgtaaacca-agggaataaaacagccaattcttttgtaa |
47167796 |
T |
|
| Q |
208 |
gtgaaaaaaggtag |
221 |
Q |
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| T |
47167795 |
gcgaaaaaaggtag |
47167782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 282 - 416
Target Start/End: Complemental strand, 47165824 - 47165691
Alignment:
| Q |
282 |
acttttgcttatattcaagactagagggagcgcttaatatcagcatttcatattgaaaaacgtgagaatttgtaatcatcatcataccttaaaattgggg |
381 |
Q |
| |
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||||||| | ||||| ||||| |||| ||||| ||| ||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
47165824 |
acttttgttcatatttaagaccagagagagcgtttagtatcaacatttcatattgaaaa-cgtgagaattggtaatcatcatcataccttaaaattgggg |
47165726 |
T |
|
| Q |
382 |
ctttatatcctacaaaacaaattaagcatgtgaag |
416 |
Q |
| |
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| T |
47165725 |
ctttatatcctacaaaacaaattaagcaagtgaag |
47165691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 417 - 478
Target Start/End: Complemental strand, 47165666 - 47165602
Alignment:
| Q |
417 |
acaaaaactgttaaacatgtg---tagatgcattcaatatatgaaaccatgacctcctcaaaata |
478 |
Q |
| |
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|||||||||||| |||||||| ||||||||||||||||||||||||||||| | ||||||||| |
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| T |
47165666 |
acaaaaactgttcaacatgtgatgtagatgcattcaatatatgaaaccatgacatactcaaaata |
47165602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 71 - 177
Target Start/End: Complemental strand, 48696824 - 48696719
Alignment:
| Q |
71 |
tcatagggatctccgttgaagaagtcgggaaccaccacataatacccggttgctgcaaccttgtcggcaaacatccttcacaaaacaattcaacaaaatg |
170 |
Q |
| |
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||||||||||| || | |||| |||| ||||| ||||||||||| || | ||| |||||||||||||||| |||||||| ||||| ||||||||||| |
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| T |
48696824 |
tcatagggatcaccatagaagtagtcaggaactaccacataataacctgctgccgcaaccttgtcggcaagattccttcac-aaacagatcaacaaaatg |
48696726 |
T |
|
| Q |
171 |
taaacca |
177 |
Q |
| |
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||||||| |
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| T |
48696725 |
taaacca |
48696719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 416
Target Start/End: Complemental strand, 48696137 - 48696083
Alignment:
| Q |
362 |
atcataccttaaaattggggctttatatcctacaaaacaaattaagcatgtgaag |
416 |
Q |
| |
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||||||||||| |||||| | || |||||||||||||||||| |||||||||||| |
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| T |
48696137 |
atcataccttataattggagattcatatcctacaaaacaaataaagcatgtgaag |
48696083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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