View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0925_low_17 (Length: 514)

Name: NF0925_low_17
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0925_low_17
NF0925_low_17
[»] chr4 (46 HSPs)
chr4 (12-166)||(38010145-38010299)
chr4 (96-166)||(10472501-10472571)
chr4 (96-166)||(13635717-13635787)
chr4 (96-166)||(49492504-49492574)
chr4 (102-171)||(30357806-30357875)
chr4 (96-166)||(55765485-55765555)
chr4 (101-166)||(1621879-1621944)
chr4 (101-166)||(15051133-15051198)
chr4 (101-166)||(30597703-30597768)
chr4 (101-166)||(36011847-36011912)
chr4 (101-166)||(51921262-51921327)
chr4 (102-166)||(25574126-25574190)
chr4 (102-166)||(35291546-35291610)
chr4 (102-166)||(46672443-46672507)
chr4 (104-166)||(1729615-1729677)
chr4 (96-166)||(11785978-11786048)
chr4 (96-166)||(11798145-11798215)
chr4 (102-167)||(16298924-16298989)
chr4 (109-166)||(24686576-24686633)
chr4 (170-223)||(26955155-26955208)
chr4 (109-166)||(49426062-49426119)
chr4 (102-166)||(20861584-20861648)
chr4 (96-166)||(26578181-26578251)
chr4 (96-166)||(27865729-27865799)
chr4 (101-166)||(38244948-38245013)
chr4 (70-171)||(43852588-43852687)
chr4 (109-166)||(53441324-53441381)
chr4 (104-170)||(36621701-36621766)
chr4 (386-422)||(26954929-26954965)
chr4 (236-275)||(26955155-26955194)
chr4 (330-367)||(26955022-26955059)
chr4 (102-166)||(22181243-22181306)
chr4 (239-275)||(26955114-26955150)
chr4 (102-166)||(50643747-50643810)
chr4 (124-163)||(805109-805148)
chr4 (104-143)||(4168384-4168423)
chr4 (104-143)||(21097166-21097205)
chr4 (104-143)||(26447412-26447451)
chr4 (104-166)||(27764244-27764305)
chr4 (112-166)||(45255979-45256032)
chr4 (102-143)||(29826604-29826645)
chr4 (104-140)||(637883-637919)
chr4 (123-163)||(1492864-1492903)
chr4 (113-165)||(2848118-2848170)
chr4 (102-151)||(6386539-6386590)
chr4 (187-223)||(26955114-26955150)
[»] chr5 (20 HSPs)
chr5 (65-166)||(16552600-16552701)
chr5 (96-166)||(30783439-30783509)
chr5 (101-166)||(13552987-13553052)
chr5 (101-166)||(14940353-14940418)
chr5 (101-166)||(15416668-15416733)
chr5 (96-166)||(3884027-3884097)
chr5 (101-166)||(14394472-14394537)
chr5 (101-166)||(26637834-26637899)
chr5 (109-166)||(33868159-33868216)
chr5 (104-166)||(16668794-16668856)
chr5 (96-166)||(37456684-37456754)
chr5 (109-165)||(4674965-4675021)
chr5 (104-166)||(13362774-13362835)
chr5 (104-166)||(18465556-18465618)
chr5 (104-166)||(25017217-25017278)
chr5 (113-165)||(7183142-7183194)
chr5 (112-166)||(28070161-28070214)
chr5 (104-166)||(34329131-34329192)
chr5 (113-166)||(39056461-39056514)
chr5 (113-165)||(15913140-15913192)
[»] chr1 (41 HSPs)
chr1 (68-167)||(31529630-31529728)
chr1 (96-166)||(11421598-11421668)
chr1 (96-166)||(20434714-20434784)
chr1 (96-166)||(49936929-49936999)
chr1 (101-166)||(48762328-48762393)
chr1 (101-166)||(50351807-50351872)
chr1 (68-168)||(51801698-51801797)
chr1 (102-168)||(33097407-33097473)
chr1 (101-166)||(24635930-24635995)
chr1 (102-171)||(44260517-44260586)
chr1 (102-166)||(21256770-21256834)
chr1 (102-166)||(31083366-31083430)
chr1 (102-170)||(44688608-44688676)
chr1 (96-166)||(4097900-4097970)
chr1 (96-166)||(23175514-23175584)
chr1 (96-162)||(34369668-34369734)
chr1 (68-166)||(2741040-2741134)
chr1 (101-166)||(18618839-18618904)
chr1 (101-166)||(19897757-19897822)
chr1 (101-166)||(25889025-25889090)
chr1 (101-166)||(43452546-43452611)
chr1 (102-166)||(28375468-28375532)
chr1 (96-166)||(6314119-6314189)
chr1 (104-166)||(37639345-37639407)
chr1 (101-166)||(16975958-16976023)
chr1 (12-68)||(44688444-44688500)
chr1 (104-166)||(35198181-35198243)
chr1 (113-166)||(13590471-13590524)
chr1 (12-53)||(19216356-19216397)
chr1 (102-166)||(20507279-20507343)
chr1 (113-156)||(13673905-13673948)
chr1 (113-156)||(20372219-20372262)
chr1 (124-163)||(41033946-41033985)
chr1 (104-166)||(18056788-18056849)
chr1 (113-166)||(5077457-5077510)
chr1 (102-166)||(28323330-28323394)
chr1 (124-163)||(37228364-37228403)
chr1 (109-143)||(16115877-16115911)
chr1 (108-166)||(41033266-41033323)
chr1 (109-166)||(22348043-22348099)
chr1 (102-166)||(51420349-51420412)
[»] chr8 (39 HSPs)
chr8 (68-166)||(2522871-2522968)
chr8 (102-166)||(34648126-34648190)
chr8 (108-171)||(9852269-9852332)
chr8 (68-155)||(12355437-12355523)
chr8 (101-166)||(19784275-19784340)
chr8 (101-166)||(30413918-30413983)
chr8 (109-170)||(40247290-40247351)
chr8 (101-166)||(41099186-41099251)
chr8 (102-166)||(10237358-10237422)
chr8 (12-68)||(40247163-40247219)
chr8 (102-166)||(43690644-43690708)
chr8 (101-166)||(15227034-15227099)
chr8 (101-166)||(34633318-34633383)
chr8 (101-166)||(41451109-41451174)
chr8 (102-166)||(35302584-35302648)
chr8 (108-163)||(23396484-23396539)
chr8 (109-166)||(1150028-1150085)
chr8 (109-166)||(15260856-15260913)
chr8 (102-170)||(13526669-13526737)
chr8 (102-170)||(13616204-13616272)
chr8 (71-170)||(28698548-28698647)
chr8 (109-166)||(40012187-40012243)
chr8 (114-171)||(40023272-40023329)
chr8 (102-166)||(7857684-7857748)
chr8 (116-176)||(10443582-10443642)
chr8 (12-68)||(13526506-13526561)
chr8 (12-68)||(13616041-13616096)
chr8 (104-143)||(7614094-7614133)
chr8 (104-166)||(32987445-32987506)
chr8 (104-144)||(8550529-8550569)
chr8 (110-146)||(30651973-30652009)
chr8 (102-166)||(42433705-42433768)
chr8 (104-166)||(1208713-1208774)
chr8 (124-166)||(18022057-18022099)
chr8 (104-166)||(39021979-39022040)
chr8 (104-141)||(4836701-4836738)
chr8 (104-141)||(4842146-4842183)
chr8 (109-166)||(7058118-7058174)
chr8 (104-145)||(15181815-15181856)
[»] chr6 (19 HSPs)
chr6 (102-172)||(30908650-30908720)
chr6 (96-166)||(31216666-31216736)
chr6 (101-169)||(6900804-6900872)
chr6 (96-166)||(34870078-34870148)
chr6 (101-166)||(1449546-1449611)
chr6 (101-166)||(1536893-1536958)
chr6 (101-166)||(7089086-7089151)
chr6 (101-166)||(15493178-15493243)
chr6 (12-68)||(4338454-4338510)
chr6 (102-172)||(7764439-7764509)
chr6 (113-165)||(27079939-27079991)
chr6 (104-166)||(12394380-12394441)
chr6 (109-171)||(16968028-16968090)
chr6 (104-166)||(18611192-18611254)
chr6 (104-166)||(35119243-35119300)
chr6 (109-166)||(33346376-33346432)
chr6 (102-156)||(4338618-4338672)
chr6 (116-166)||(32556348-32556398)
chr6 (70-99)||(34399742-34399771)
[»] chr3 (36 HSPs)
chr3 (68-170)||(53594968-53595069)
chr3 (101-166)||(33414010-33414075)
chr3 (102-166)||(41192348-41192412)
chr3 (108-172)||(51846784-51846848)
chr3 (96-166)||(9106271-9106341)
chr3 (101-166)||(3475404-3475469)
chr3 (101-166)||(19284675-19284740)
chr3 (101-166)||(46237755-46237820)
chr3 (101-166)||(47335036-47335101)
chr3 (98-166)||(51681996-51682064)
chr3 (96-166)||(30947903-30947973)
chr3 (101-166)||(2941923-2941988)
chr3 (101-166)||(9595977-9596042)
chr3 (101-166)||(26662535-26662600)
chr3 (109-166)||(54379167-54379224)
chr3 (12-68)||(26958224-26958280)
chr3 (102-166)||(34563345-34563409)
chr3 (102-166)||(47728392-47728456)
chr3 (101-166)||(6097681-6097746)
chr3 (113-166)||(32232995-32233048)
chr3 (112-156)||(28299960-28300004)
chr3 (111-166)||(23755289-23755344)
chr3 (101-166)||(10986356-10986421)
chr3 (114-167)||(37319470-37319523)
chr3 (102-166)||(19385313-19385376)
chr3 (113-165)||(41568836-41568888)
chr3 (102-166)||(51362436-51362499)
chr3 (120-166)||(26960630-26960676)
chr3 (109-166)||(23699331-23699388)
chr3 (109-166)||(23717786-23717843)
chr3 (109-166)||(23736242-23736299)
chr3 (109-170)||(39195113-39195174)
chr3 (104-143)||(50754032-50754071)
chr3 (104-143)||(52987650-52987689)
chr3 (104-166)||(7045300-7045361)
chr3 (124-166)||(9180111-9180153)
[»] chr7 (25 HSPs)
chr7 (101-166)||(16933241-16933306)
chr7 (101-166)||(16938624-16938689)
chr7 (102-171)||(24359870-24359939)
chr7 (68-156)||(39007614-39007701)
chr7 (95-166)||(20000665-20000736)
chr7 (68-170)||(34875489-34875590)
chr7 (101-166)||(763701-763766)
chr7 (102-171)||(11732645-11732714)
chr7 (101-166)||(30884219-30884284)
chr7 (101-166)||(31660073-31660138)
chr7 (102-166)||(41911107-41911171)
chr7 (102-166)||(46358524-46358588)
chr7 (109-166)||(44141256-44141313)
chr7 (104-166)||(5757390-5757452)
chr7 (101-166)||(47340150-47340216)
chr7 (113-166)||(6797394-6797447)
chr7 (109-155)||(35736963-35737009)
chr7 (109-166)||(15974941-15974997)
chr7 (104-153)||(27335629-27335677)
chr7 (109-166)||(46346721-46346778)
chr7 (104-143)||(46024053-46024092)
chr7 (104-166)||(12279749-12279810)
chr7 (104-166)||(30428877-30428938)
chr7 (113-166)||(45402879-45402932)
chr7 (102-166)||(25778841-25778904)
[»] scaffold0571 (1 HSPs)
scaffold0571 (96-166)||(668-738)
[»] scaffold0045 (1 HSPs)
scaffold0045 (96-166)||(33688-33758)
[»] chr2 (28 HSPs)
chr2 (101-166)||(15016563-15016628)
chr2 (101-166)||(39355039-39355104)
chr2 (108-166)||(18762871-18762929)
chr2 (109-171)||(39548041-39548103)
chr2 (109-166)||(2263577-2263634)
chr2 (109-166)||(5098720-5098777)
chr2 (101-166)||(7487251-7487316)
chr2 (101-166)||(8149835-8149900)
chr2 (101-166)||(8154459-8154524)
chr2 (101-166)||(9143589-9143654)
chr2 (101-166)||(34464715-34464780)
chr2 (101-166)||(1292176-1292241)
chr2 (109-170)||(13081865-13081926)
chr2 (102-170)||(16142073-16142141)
chr2 (113-165)||(24024633-24024685)
chr2 (104-166)||(25192896-25192957)
chr2 (108-166)||(41346044-41346102)
chr2 (102-166)||(25995290-25995354)
chr2 (102-166)||(36636935-36636999)
chr2 (110-165)||(40853685-40853740)
chr2 (104-166)||(18298111-18298172)
chr2 (104-143)||(4579818-4579857)
chr2 (124-163)||(21155441-21155480)
chr2 (124-163)||(27974291-27974330)
chr2 (124-163)||(28060820-28060859)
chr2 (124-166)||(3925582-3925624)
chr2 (104-166)||(4281788-4281850)
chr2 (104-166)||(20709778-20709839)
[»] scaffold0581 (1 HSPs)
scaffold0581 (101-166)||(8418-8483)
[»] scaffold0074 (1 HSPs)
scaffold0074 (101-166)||(24278-24343)
[»] scaffold0460 (1 HSPs)
scaffold0460 (113-156)||(1618-1661)
[»] scaffold0006 (2 HSPs)
scaffold0006 (113-166)||(209330-209383)
scaffold0006 (113-156)||(171519-171562)
[»] scaffold0238 (1 HSPs)
scaffold0238 (102-166)||(25230-25293)
[»] scaffold0069 (1 HSPs)
scaffold0069 (113-156)||(51373-51416)
[»] scaffold0002 (1 HSPs)
scaffold0002 (116-166)||(450206-450256)
[»] scaffold0544 (1 HSPs)
scaffold0544 (104-166)||(10675-10736)
[»] scaffold0097 (1 HSPs)
scaffold0097 (104-166)||(13617-13678)
[»] scaffold0012 (1 HSPs)
scaffold0012 (113-154)||(119218-119259)
[»] scaffold0717 (1 HSPs)
scaffold0717 (113-165)||(7351-7403)
[»] scaffold0337 (1 HSPs)
scaffold0337 (70-98)||(7119-7147)


Alignment Details
Target: chr4 (Bit Score: 139; Significance: 2e-72; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 12 - 166
Target Start/End: Complemental strand, 38010299 - 38010145
Alignment:
Q  12 agagatgagagggggcggtgaggttgagattttcagagaagaaacaaaaatcagaggcgtgtgtgcgatcagattgtgagagtgtgaaggaaatctaatg 111  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  38010299 agagatgagagggggcggtgaggttgagattttcggagaagaaacagaaatcagaggcgtgtgtgcgatcagattgtgaaagtgtgaaggaaatcaaatg 38010200  T
Q  112 gttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38010199 gttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 38010145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 10472571 - 10472501
Alignment:
Q  96 tgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| ||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  10472571 tgaaagaaatctgatggttgtgaaatgtttatgcacggtgcataaggaaatgacttatgcaccataacttt 10472501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 13635717 - 13635787
Alignment:
Q  96 tgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| ||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  13635717 tgaaagaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataacttt 13635787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 49492504 - 49492574
Alignment:
Q  96 tgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| ||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  49492504 tgaaagaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataacttt 49492574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 30357875 - 30357806
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactttgccca 171  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  30357875 aaatccaatggttgtgaagtgtttatgcacggtgcataaggaaatgacttatgaaccataacttttccca 30357806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 55765555 - 55765485
Alignment:
Q  96 tgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| ||||||| |||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||    
T  55765555 tgaaagaaatctgatggttgtaatgtgtttatgcacggtgcataaggaaatgacttatgcaccataacttt 55765485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 1621944 - 1621879
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||    
T  1621944 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaatggcttatgcaccataacttt 1621879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 15051133 - 15051198
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  15051133 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 15051198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 30597768 - 30597703
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  30597768 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 30597703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 36011912 - 36011847
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  36011912 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 36011847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 51921262 - 51921327
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  51921262 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 51921327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 25574126 - 25574190
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  25574126 aaatctgatggttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataacttt 25574190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 35291546 - 35291610
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  35291546 aaatcttatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 35291610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 46672507 - 46672443
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  46672507 aaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 46672443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 1729615 - 1729677
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| |||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||    
T  1729615 atctgatggttgtgaagtgtttatgcacggtgtataaagaaatgacttatgcaccataacttt 1729677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 11786048 - 11785978
Alignment:
Q  96 tgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| ||||||| |||||||||| ||||||||||| ||||||||||||||||  |||||||||||||||||    
T  11786048 tgaaagaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaatggtttatgcaccataacttt 11785978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 11798215 - 11798145
Alignment:
Q  96 tgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| ||||||| |||||||||| ||||||||||| ||||||||||||||||  |||||||||||||||||    
T  11798215 tgaaagaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaatggtttatgcaccataacttt 11798145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 102 - 167
Target Start/End: Complemental strand, 16298989 - 16298924
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactttg 167  Q
    |||||| |||||||||||||| ||||||| |||||||||||||||||||||||||  |||||||||    
T  16298989 aaatctgatggttgtgaagtgattatgcagggtgcataaggaaatgacttatgcataataactttg 16298924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 24686633 - 24686576
Alignment:
Q  109 atggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  24686633 atggttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataacttt 24686576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 26955208 - 26955155
Alignment:
Q  170 caactaatggatatgtgtttttgtgtgaaagtatgtctaaatcggtcatacaag 223  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  26955208 caactaatggatatgtgtttttgtgtgaaagtgtgtctaaatcgatcatacaag 26955155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 49426062 - 49426119
Alignment:
Q  109 atggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  49426062 atggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 49426119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 20861648 - 20861584
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||| |||| |||||||||||||||||| || ||||||||||||| ||||||||||||||||||    
T  20861648 aaatccaatgattgtgaagtgtttatgcacggcgcataaggaaatggcttatgcaccataacttt 20861584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 26578181 - 26578251
Alignment:
Q  96 tgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| ||||||| |||||||||||||||||||||| | ||||||| |||||| |||||||||||| |||||    
T  26578181 tgaaagaaatctgatggttgtgaagtgtttatgcacgatgcataaagaaatggcttatgcaccatgacttt 26578251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 27865729 - 27865799
Alignment:
Q  96 tgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| ||||||| |||||||||| ||||||||||| |||||||| ||||||| ||||||||| ||||||||    
T  27865729 tgaaagaaatctgatggttgtgatgtgtttatgcacggtgcatatggaaatggcttatgcactataacttt 27865799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 38245013 - 38244948
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||||||||||||| |  ||||| ||||||||| ||||||||||||||||||    
T  38245013 gaaatctgatggttgtgaagtgtttatgaactgtgcagaaggaaatggcttatgcaccataacttt 38244948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 171
Target Start/End: Original strand, 43852588 - 43852687
Alignment:
Q  70 gtgtgtgcgatcagattgtgagagtgtgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactttgcc 169  Q
    |||||| ||||||||||||||||||| ||   |||||| ||| || |||||| |||||||||| |||||||| ||||||||||||||  |||||||||||    
T  43852588 gtgtgttcgatcagattgtgagagtgcgatc-aaatctgatgattatgaagtatttatgcatg-tgcataagaaaatgacttatgcataataactttgcc 43852685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 53441381 - 53441324
Alignment:
Q  109 atggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||||||| ||||||||||| | ||||||||||||| |||||||||||||||||||    
T  53441381 atggttgtgatgtgtttatgcacgatgcataaggaaataacttatgcaccataacttt 53441324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 104 - 170
Target Start/End: Original strand, 36621701 - 36621766
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactttgccc 170  Q
    |||| |||||||||||||||||||||| ||||||||||| | |  ||||||||||||||||||||||    
T  36621701 atctgatggttgtgaagtgtttatgcacggtgcataagg-atttccttatgcaccataactttgccc 36621766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 422
Target Start/End: Complemental strand, 26954965 - 26954929
Alignment:
Q  386 gttatatttgaacacactagttaaccatgtatgtatt 422  Q
    |||||||||||||||||||||||||||||||||||||    
T  26954965 gttatatttgaacacactagttaaccatgtatgtatt 26954929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 26955194 - 26955155
Alignment:
Q  236 gtgtttttgtgtgaaagcgtgtctaaatcgatcatacaag 275  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  26955194 gtgtttttgtgtgaaagtgtgtctaaatcgatcatacaag 26955155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 330 - 367
Target Start/End: Complemental strand, 26955059 - 26955022
Alignment:
Q  330 cattcaatagataactaaagaatatataaaattgtcgc 367  Q
    |||||||||||||||||| |||||||||||||||||||    
T  26955059 cattcaatagataactaatgaatatataaaattgtcgc 26955022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 22181243 - 22181306
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||| ||||||||||||| |||||||| ||||||||||| | |  ||||||||||||||||||    
T  22181243 aaatctgatggttgtgaagtttttatgcacggtgcataagg-atttccttatgcaccataacttt 22181306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 26955150 - 26955114
Alignment:
Q  239 tttttgtgtgaaagcgtgtctaaatcgatcatacaag 275  Q
    |||||||||||||| ||||||||||||||||||||||    
T  26955150 tttttgtgtgaaagtgtgtctaaatcgatcatacaag 26955114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 50643810 - 50643747
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||| |||||| ||||||||||||||| ||||||||||| | |  ||||||||||||||||||    
T  50643810 aaatctgatggttatgaagtgtttatgcacggtgcataagg-atttccttatgcaccataacttt 50643747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 163
Target Start/End: Complemental strand, 805148 - 805109
Alignment:
Q  124 ttatgcatggtgcataaggaaatgacttatgcaccataac 163  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  805148 ttatgcacggtgcataaggaaatggcttatgcaccataac 805109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 143
Target Start/End: Complemental strand, 4168423 - 4168384
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataagga 143  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  4168423 atctgatggttgtgaagtgtttatgcacggtgcataagga 4168384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 143
Target Start/End: Complemental strand, 21097205 - 21097166
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataagga 143  Q
    |||||||||||||||||||||||| || ||||||||||||    
T  21097205 atctaatggttgtgaagtgtttatacacggtgcataagga 21097166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 143
Target Start/End: Original strand, 26447412 - 26447451
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataagga 143  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  26447412 atctgatggttgtgaagtgtttatgcacggtgcataagga 26447451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 27764305 - 27764244
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| ||||||| |||||||||||||| ||||||||||| | |  ||||||||||||||||||    
T  27764305 atctgatggttgcgaagtgtttatgcacggtgcataagg-atttccttatgcaccataacttt 27764244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 45256032 - 45255979
Alignment:
Q  112 gttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||||||||||||||| ||||||||||| | |  ||||||||||||||||||    
T  45256032 gttgtgaagtgtttatgcacggtgcataagg-atttccttatgcaccataacttt 45255979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 29826604 - 29826645
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataagga 143  Q
    |||||| |||||||||||||| ||||||| ||||||||||||    
T  29826604 aaatctgatggttgtgaagtgcttatgcacggtgcataagga 29826645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 637919 - 637883
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataa 140  Q
    |||| |||||||||||||||||||||| |||||||||    
T  637919 atctgatggttgtgaagtgtttatgcacggtgcataa 637883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 1492864 - 1492903
Alignment:
Q  123 tttatgcatggtgcataaggaaatgacttatgcaccataac 163  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  1492864 tttatgcatggtgcataaggaaat-ccttatgcaccataac 1492903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 2848118 - 2848170
Alignment:
Q  113 ttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactt 165  Q
    |||| |||| |||||||| ||||||||||||| |||||||||||  |||||||    
T  2848118 ttgtaaagtatttatgcagggtgcataaggaactgacttatgcataataactt 2848170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 6386539 - 6386590
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggt--gcataaggaaatgactt 151  Q
    |||||| |||||||||||||||||||||| |||  ||||||| |||||||||    
T  6386539 aaatctgatggttgtgaagtgtttatgcagggtgcgcataagaaaatgactt 6386590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 26955150 - 26955114
Alignment:
Q  187 tttttgtgtgaaagtatgtctaaatcggtcatacaag 223  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  26955150 tttttgtgtgaaagtgtgtctaaatcgatcatacaag 26955114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 65 - 166
Target Start/End: Original strand, 16552600 - 16552701
Alignment:
Q  65 gaggcgtgtgtgcgatcagattgtgagagtgtgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataact 164  Q
    |||||||||||||||||||| ||||| ||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  16552600 gaggcgtgtgtgcgatcagactgtgaaagtgtgaagaaaatatgatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcataataact 16552699  T
Q  165 tt 166  Q
    ||    
T  16552700 tt 16552701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 30783509 - 30783439
Alignment:
Q  96 tgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| ||||||| ||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||    
T  30783509 tgaaagaaatctgatggttgcgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataacttt 30783439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 13553052 - 13552987
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  13553052 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 13552987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 14940353 - 14940418
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  14940353 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 14940418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 15416733 - 15416668
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  15416733 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 15416668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 3884027 - 3884097
Alignment:
Q  96 tgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| ||||| | |||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||    
T  3884027 tgaaagaaatttgatggttgtaatgtgtttatgcacggtgcataaggaaatgacttatgcaccataacttt 3884097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 14394537 - 14394472
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| || |||||||| ||||||||||||||| |||||||||||||||||||    
T  14394537 gaaatctgatggttgtgatgtatttatgcacggtgcataaggaaataacttatgcaccataacttt 14394472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 26637834 - 26637899
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| |||||||||| ||||| ||||||||||||||||||    
T  26637834 gaaatctgatggttgtgatgtgtttatgcacggtgcataagaaaatggcttatgcaccataacttt 26637899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 33868216 - 33868159
Alignment:
Q  109 atggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  33868216 atggttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataacttt 33868159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 16668794 - 16668856
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| |||||||||||||||||||||| |||||||||||||||| ||||||||  ||||||||    
T  16668794 atctgatggttgtgaagtgtttatgcagggtgcataaggaaatgtcttatgcataataacttt 16668856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 37456754 - 37456684
Alignment:
Q  96 tgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| ||||||| |||||||||| ||||||||| | |||||||||||||||| || |||||||||||||||    
T  37456754 tgaaagaaatctgatggttgtgatgtgtttatgtacggtgcataaggaaatggctcatgcaccataacttt 37456684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 4675021 - 4674965
Alignment:
Q  109 atggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactt 165  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||  |||||||    
T  4675021 atggttgtgaagtgtttatgcagggtgcataaggaaatgacttacgcataataactt 4674965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 13362835 - 13362774
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| |||||||||||||||||||||| ||||||||||| | |  ||||||||||||||||||    
T  13362835 atctgatggttgtgaagtgtttatgcacggtgcataagg-atttccttatgcaccataacttt 13362774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 18465556 - 18465618
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| |||||||||||||||||||||| | ||||||| |||||| ||||||||  ||||||||    
T  18465556 atctgatggttgtgaagtgtttatgcaggatgcataatgaaatgtcttatgcataataacttt 18465618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 25017217 - 25017278
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| |||||||||||||||||||||| ||||||||||| | |  ||||||||||||||||||    
T  25017217 atctgatggttgtgaagtgtttatgcacggtgcataagg-atttccttatgcaccataacttt 25017278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 7183194 - 7183142
Alignment:
Q  113 ttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactt 165  Q
    ||||||||||||||||||  |||||||||||| |||||||||||  |||||||    
T  7183194 ttgtgaagtgtttatgcagtgtgcataaggaactgacttatgcataataactt 7183142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 28070161 - 28070214
Alignment:
Q  112 gttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||||||||||||||| ||||||||||| | |  ||||||||||||||||||    
T  28070161 gttgtgaagtgtttatgcacggtgcataagg-atttccttatgcaccataacttt 28070214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 34329192 - 34329131
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| |||||||||||||||||||||| ||||||||| | | |  ||||||||||||||||||    
T  34329192 atctgatggttgtgaagtgtttatgcacggtgcataaag-atttccttatgcaccataacttt 34329131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 166
Target Start/End: Original strand, 39056461 - 39056514
Alignment:
Q  113 ttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||||||||||| ||| |||||||||| |||||| |||||||  ||||||||    
T  39056461 ttgtgaagtgtttaagcagggtgcataagaaaatgatttatgcataataacttt 39056514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 15913140 - 15913192
Alignment:
Q  113 ttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactt 165  Q
    |||| ||||||||||||| | ||||||||||| |||||||||||  |||||||    
T  15913140 ttgtaaagtgtttatgcaggatgcataaggaactgacttatgcataataactt 15913192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 9e-28; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 68 - 167
Target Start/End: Original strand, 31529630 - 31529728
Alignment:
Q  68 gcgtgtgtgcgatcagattgtgagagtgtgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactttg 167  Q
    |||||||||||||||||||||||||||| ||   |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||    
T  31529630 gcgtgtgtgcgatcagattgtgagagtgcgatc-aaatctgatggttgtgaagtgtttatgcatggtgcataaggaaatggcttatgcataataactttg 31529728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 11421668 - 11421598
Alignment:
Q  96 tgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| ||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  11421668 tgaaagaaatctgatggttgtgaagtgtttatgcacggtgcataaggaaatgatttatgcaccataacttt 11421598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 20434714 - 20434784
Alignment:
Q  96 tgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| |||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||    
T  20434714 tgaaagaaatctaatggttgtgatgtgtttatgcacggtgcataaggaaatggcttatgcaccataacttt 20434784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 49936929 - 49936999
Alignment:
Q  96 tgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| ||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  49936929 tgaaagaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataacttt 49936999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 48762328 - 48762393
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  48762328 gaaatctaatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 48762393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 50351872 - 50351807
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  50351872 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataacttt 50351807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 68 - 168
Target Start/End: Original strand, 51801698 - 51801797
Alignment:
Q  68 gcgtgtgtgcgatcagattgtgagagtgtgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactttg 167  Q
    ||||||||||||||||| |||||||| | ||   || ||| |||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||    
T  51801698 gcgtgtgtgcgatcagaatgtgagagcgcgatc-aagtctgatggttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataactttg 51801796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 102 - 168
Target Start/End: Complemental strand, 33097473 - 33097407
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactttgc 168  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||    
T  33097473 aaatctgatggttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataactttgc 33097407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 24635995 - 24635930
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  24635995 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 24635930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 44260586 - 44260517
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactttgccca 171  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||| |||  |||||||||||||    
T  44260586 aaatctgatggttgtgaagtgtttatgcagggtgcataaggaaatgacttacgcataataactttgccca 44260517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 21256770 - 21256834
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||| ||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||    
T  21256770 aaatccaatggttgtgaagtgtttatgcacggtgcataagaaaatggcttatgcaccataacttt 21256834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 31083430 - 31083366
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||| ||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  31083430 aaatccaatggttgtgaagtgtttatgaatggtacataaggaaatggcttatgcaccataacttt 31083366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 44688608 - 44688676
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactttgccc 170  Q
    |||||| ||||||||||||||||||||||  ||||||||||||||||||||||||  ||||||||||||    
T  44688608 aaatctgatggttgtgaagtgtttatgcagcgtgcataaggaaatgacttatgcatgataactttgccc 44688676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 4097900 - 4097970
Alignment:
Q  96 tgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| ||||| | |||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||    
T  4097900 tgaaagaaatttgatggttgtgaagtgtttatgcacggtgcataaggaaatagcttatgcaccataacttt 4097970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 23175514 - 23175584
Alignment:
Q  96 tgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| ||||| | |||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||    
T  23175514 tgaaagaaatttgatggttgtgaagtgtttatgcacggcgcataaggaaatggcttatgcaccataacttt 23175584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 34369734 - 34369668
Alignment:
Q  96 tgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataa 162  Q
    |||| ||||||| |||||||||||||||||||||| |||||||||| ||||| ||||||||||||||    
T  34369734 tgaaagaaatctgatggttgtgaagtgtttatgcacggtgcataagaaaatggcttatgcaccataa 34369668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 2741134 - 2741040
Alignment:
Q  68 gcgtgtgtgcgatcagattgtgagagtgtgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||||||||||||||||||||||||     ||||||||||| ||||||| ||||||||||  || ||||| |||||||||||||||  ||||||||    
T  2741134 gcgtgtgtgcgatcagattgtgagagtg----cgaaatctaatgattgtgaaatgtttatgcagagtacataaagaaatgacttatgcataataacttt 2741040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 18618904 - 18618839
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||| | |||||||||||||||||    
T  18618904 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataatttatgcaccataacttt 18618839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 19897757 - 19897822
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| ||||||||||  |||||||||| ||||||||||||||| |||||||||||||||||||    
T  19897757 gaaatctgatggttgtgatatgtttatgcacggtgcataaggaaataacttatgcaccataacttt 19897822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 25889025 - 25889090
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||||  ||||||||||||||||||    
T  25889025 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaatagcttatgcaccataacttt 25889090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 43452611 - 43452546
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| || ||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  43452611 gaaatctgatagttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 43452546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 28375532 - 28375468
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||| |||||||||| ||||||||||| ||||||||| ||||| |||||||||||||||||||    
T  28375532 aaatctgatggttgtgatgtgtttatgcacggtgcataaagaaataacttatgcaccataacttt 28375468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 6314189 - 6314119
Alignment:
Q  96 tgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| ||||| | |||| ||||| ||||||||||| |||||||||||||||| ||||||||||||||||||    
T  6314189 tgaaagaaatttgatggctgtgatgtgtttatgcacggtgcataaggaaatggcttatgcaccataacttt 6314119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 37639407 - 37639345
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| |||||||||||||||||||||| |||||||||||||||| ||||||||  ||||||||    
T  37639407 atctgatggttgtgaagtgtttatgcagggtgcataaggaaatgtcttatgcataataacttt 37639345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 16976023 - 16975958
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| |||||||| || ||||||||||||||| ||||||| |||||||||||    
T  16976023 gaaatctgatggttgtgatgtgtttatacacggtgcataaggaaataacttatgaaccataacttt 16975958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 44688444 - 44688500
Alignment:
Q  12 agagatgagagggggcggtgaggttgagattttcagagaagaaacaaaaatcagagg 68  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||    
T  44688444 agagatgagagggggcggtgaggtttagattttcggagaagaaacagaaatcggagg 44688500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 35198181 - 35198243
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| |||| ||||||||||||||||| |||||||||||||||| ||||||||  ||||||||    
T  35198181 atctgatggctgtgaagtgtttatgcagggtgcataaggaaatgtcttatgcataataacttt 35198243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 13590524 - 13590471
Alignment:
Q  113 ttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| ||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  13590524 ttgtaaagtgtttatgcagggtgcataaggaaatgacttatgcataataacttt 13590471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 19216397 - 19216356
Alignment:
Q  12 agagatgagagggggcggtgaggttgagattttcagagaaga 53  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  19216397 agagatgagagggggcggtgaggttgagattttcggagaaga 19216356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 20507279 - 20507343
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||| |||||||||||| | ||||||||   |||||||||||||| ||||||||||||||||||    
T  20507279 aaatccaatggttgtgaaatatttatgcacaatgcataaggaaatggcttatgcaccataacttt 20507343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 113 - 156
Target Start/End: Complemental strand, 13673948 - 13673905
Alignment:
Q  113 ttgtgaagtgtttatgcatggtgcataaggaaatgacttatgca 156  Q
    ||||||||||||||| || |||||||||||||||||||||||||    
T  13673948 ttgtgaagtgtttatacagggtgcataaggaaatgacttatgca 13673905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 113 - 156
Target Start/End: Complemental strand, 20372262 - 20372219
Alignment:
Q  113 ttgtgaagtgtttatgcatggtgcataaggaaatgacttatgca 156  Q
    |||||||||||||||||| |||||||||| ||||||||||||||    
T  20372262 ttgtgaagtgtttatgcagggtgcataagaaaatgacttatgca 20372219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 124 - 163
Target Start/End: Original strand, 41033946 - 41033985
Alignment:
Q  124 ttatgcatggtgcataaggaaatgacttatgcaccataac 163  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  41033946 ttatgcacggtgcataaggaaatgacttatgcaccataac 41033985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 18056849 - 18056788
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| |||||||||||||||||||||| ||||||||||| | |  ||||||||||||||||||    
T  18056849 atctgatggttgtgaagtgtttatgcacggtgcataagg-atttccttatgcaccataacttt 18056788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 113 - 166
Target Start/End: Original strand, 5077457 - 5077510
Alignment:
Q  113 ttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||||||| ||||||| || ||||||||||||||||||||||  ||||||||    
T  5077457 ttgtgaagtgcttatgcagggcgcataaggaaatgacttatgcataataacttt 5077510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 28323330 - 28323394
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||| ||||||||| |||||||||| | |||||||||  ||||||||||||||  ||||||||    
T  28323330 aaatctgatggttgtgtagtgtttatggagggtgcataaaaaaatgacttatgcataataacttt 28323394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 163
Target Start/End: Original strand, 37228364 - 37228403
Alignment:
Q  124 ttatgcatggtgcataaggaaatgacttatgcaccataac 163  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  37228364 ttatgcacggtgcataaggaaatggcttatgcaccataac 37228403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 16115911 - 16115877
Alignment:
Q  109 atggttgtgaagtgtttatgcatggtgcataagga 143  Q
    |||||||||||||||||||||| ||||||||||||    
T  16115911 atggttgtgaagtgtttatgcacggtgcataagga 16115877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 41033323 - 41033266
Alignment:
Q  108 aatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||||||||  | |||||| |||||||||||||||||  ||||||||||||||||||    
T  41033323 aatggttgtgatttctttatgtatggtgcataaggaaat-ccttatgcaccataacttt 41033266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 22348099 - 22348043
Alignment:
Q  109 atggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||||||||||||||||||  ||||||||||| | |  ||||||||||||||||||    
T  22348099 atggttgtgaagtgtttatgcgcggtgcataagg-atttccttatgcaccataacttt 22348043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 51420412 - 51420349
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||| ||||||||||| |||||||||| | ||||||| ||| |||||||||||  ||||||||    
T  51420412 aaatctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttt 51420349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 9e-25; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 2522968 - 2522871
Alignment:
Q  68 gcgtgtgtgcgatcagattgtgagagtgtgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||||||||||||||||||||||||| ||   ||||||| || |||||||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  2522968 gcgtgtgtgcgatcagattgtgagagtgcgatc-aaatctattgattgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataacttt 2522871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 34648126 - 34648190
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34648126 aaatccaatggttgtgaagtgtttatgcacggtgcataaggaaatgacttatgcaccataacttt 34648190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 9852332 - 9852269
Alignment:
Q  108 aatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactttgccca 171  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  9852332 aatggttgtgaagtgtttatgcacggtgcataaggaaatgacttatgcaccataacttttccca 9852269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 68 - 155
Target Start/End: Complemental strand, 12355523 - 12355437
Alignment:
Q  68 gcgtgtgtgcgatcagattgtgagagtgtgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgc 155  Q
    |||||||||||||||||||||||||||| ||   | ||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  12355523 gcgtgtgtgcgatcagattgtgagagtgcgatc-agatctaatggttgtgaagtgtttatgcagggtgcataagaaaatgacttatgc 12355437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 19784340 - 19784275
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||    
T  19784340 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaatggcttatgcaccataacttt 19784275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 30413983 - 30413918
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||    
T  30413983 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcagcataacttt 30413918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 40247290 - 40247351
Alignment:
Q  109 atggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactttgccc 170  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||    
T  40247290 atggttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataactttgccc 40247351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 41099251 - 41099186
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  41099251 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 41099186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 10237422 - 10237358
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  10237422 aaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 10237358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 40247163 - 40247219
Alignment:
Q  12 agagatgagagggggcggtgaggttgagattttcagagaagaaacaaaaatcagagg 68  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  40247163 agagatgagagggggcggcgaggttgagattttcggagaagaaacaaaaatcagagg 40247219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 43690708 - 43690644
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  43690708 aaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 43690644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 15227099 - 15227034
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||| | ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  15227099 gaaatctgatggttgtaatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 15227034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 34633318 - 34633383
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||| ||||||| |||||||||||    
T  34633318 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgtaccataacttt 34633383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 41451174 - 41451109
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| ||| |||||| ||||||||||| |||||||||||||||| ||||||||||||||||||    
T  41451174 gaaatctgatgattgtgacgtgtttatgcacggtgcataaggaaatggcttatgcaccataacttt 41451109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 35302584 - 35302648
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||| ||||||||||||||||||||||| |||||||||| ||||| | ||||||||||||||||    
T  35302584 aaatccaatggttgtgaagtgtttatgcacggtgcataagaaaatgtcctatgcaccataacttt 35302648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 108 - 163
Target Start/End: Complemental strand, 23396539 - 23396484
Alignment:
Q  108 aatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataac 163  Q
    ||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||    
T  23396539 aatggttgtaaagtgtttatgcacggtgcataaggaaatggcttatgcaccataac 23396484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 1150028 - 1150085
Alignment:
Q  109 atggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||||||| ||||||||||| ||||||||||| ||| |||||||||||||||||||    
T  1150028 atggttgtgatgtgtttatgcacggtgcataagggaataacttatgcaccataacttt 1150085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 15260856 - 15260913
Alignment:
Q  109 atggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||||||||||||||||||| ||||||||||||||   ||||||||||||||||||    
T  15260856 atggttgtgaagtgtttatgcacggtgcataaggaaaatccttatgcaccataacttt 15260913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 13526669 - 13526737
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactttgccc 170  Q
    |||||| ||||||||||||||||||||||  || |||||||||||| ||||||||  ||||||||||||    
T  13526669 aaatctgatggttgtgaagtgtttatgcagagtacataaggaaatggcttatgcataataactttgccc 13526737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 13616204 - 13616272
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactttgccc 170  Q
    |||||| ||||||||||||||||||||||  || |||||||||||| ||||||||  ||||||||||||    
T  13616204 aaatctgatggttgtgaagtgtttatgcagagtacataaggaaatggcttatgcataataactttgccc 13616272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 71 - 170
Target Start/End: Original strand, 28698548 - 28698647
Alignment:
Q  71 tgtgtgcgatcagattgtgagagtgtgaaggaaatctaatggttgtgaagtgttta-tgcatggtgcataaggaaatgacttatgcaccataactttgcc 169  Q
    |||||||||||| |||||||||||| ||   |||||| ||||||||||| |||||| |||| |||||||||| ||||| ||||||||  |||||||||||    
T  28698548 tgtgtgcgatcaaattgtgagagtgcgatc-aaatctgatggttgtgaaatgtttaatgcagggtgcataagaaaatggcttatgcataataactttgcc 28698646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 40012187 - 40012243
Alignment:
Q  109 atggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||||| |||| ||||||||||||||||||||||||  ||||||||||||||||||    
T  40012187 atggttgtaaagtctttatgcatggtgcataaggaaat-ccttatgcaccataacttt 40012243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 40023272 - 40023329
Alignment:
Q  114 tgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactttgccca 171  Q
    |||||| |||||||||| |||| ||||||||||| |||||||||||||||||| ||||    
T  40023272 tgtgaaatgtttatgcacggtgtataaggaaatggcttatgcaccataacttttccca 40023329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 7857748 - 7857684
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||| ||| |||||| ||||||||||| || ||||||| ||||| ||||||||||||||||||    
T  7857748 aaatctgatgattgtgatgtgtttatgcacggcgcataagaaaatggcttatgcaccataacttt 7857684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 10443582 - 10443642
Alignment:
Q  116 tgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactttgcccaactaa 176  Q
    ||||||||||||||| |||||||||||||||| ||||||||  ||||||||| ||| ||||    
T  10443582 tgaagtgtttatgcagggtgcataaggaaatggcttatgcataataactttgtccatctaa 10443642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 13526506 - 13526561
Alignment:
Q  12 agagatgagagggggcggtgaggttgagattttcagagaagaaacaaaaatcagagg 68  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||||    
T  13526506 agagatgagagggg-cggtgaggttgagattttcggagaagaaacacaaatcggagg 13526561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 13616041 - 13616096
Alignment:
Q  12 agagatgagagggggcggtgaggttgagattttcagagaagaaacaaaaatcagagg 68  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||||    
T  13616041 agagatgagagggg-cggtgaggttgagattttcggagaagaaacacaaatcggagg 13616096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 104 - 143
Target Start/End: Complemental strand, 7614133 - 7614094
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataagga 143  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  7614133 atctgatggttgtgaagtgtttatgcatggtgcataagga 7614094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 32987445 - 32987506
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| |||||||||||||||||||||| ||||||||||| | |  ||||||||||||||||||    
T  32987445 atctgatggttgtgaagtgtttatgcacggtgcataagg-atttccttatgcaccataacttt 32987506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 8550569 - 8550529
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataaggaa 144  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  8550569 atctgatggttgtgaagtgtttatgcacggtgcataaggaa 8550529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 30652009 - 30651973
Alignment:
Q  110 tggttgtgaagtgtttatgcatggtgcataaggaaat 146  Q
    ||||||||||||||||||||| |||||||||||||||    
T  30652009 tggttgtgaagtgtttatgcagggtgcataaggaaat 30651973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 42433768 - 42433705
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||| |||||||||||||| ||||||| ||||||||||| | |  ||||||||||||||||||    
T  42433768 aaatctgatggttgtgaagtgcttatgcacggtgcataagg-atttccttatgcaccataacttt 42433705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 1208774 - 1208713
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| |||||||| ||||||||||||| ||||||||||| | |  ||||||||||||||||||    
T  1208774 atcttatggttgtaaagtgtttatgcacggtgcataagg-atttccttatgcaccataacttt 1208713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 166
Target Start/End: Complemental strand, 18022099 - 18022057
Alignment:
Q  124 ttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| ||||||||||| || ||||||||||||||||||||    
T  18022099 ttatgcagggtgcataagggaaggacttatgcaccataacttt 18022057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 39022040 - 39021979
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| ||| |||||||||||||||||| ||||||||||| | |  ||||||||||||||||||    
T  39022040 atctgatgattgtgaagtgtttatgcacggtgcataagg-atttccttatgcaccataacttt 39021979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 4836701 - 4836738
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataag 141  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  4836701 atctgatggttgtgaagtgtttatgcacggtgcataag 4836738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 4842146 - 4842183
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataag 141  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  4842146 atctgatggttgtgaagtgtttatgcacggtgcataag 4842183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 7058174 - 7058118
Alignment:
Q  109 atggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||||||||||||||||||| ||||||||| | | |  ||||||||||||||||||    
T  7058174 atggttgtgaagtgtttatgcacggtgcataa-gtatttccttatgcaccataacttt 7058118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 15181856 - 15181815
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataaggaaa 145  Q
    |||| ||| |||||||||||||||||| ||||||||||||||    
T  15181856 atctgatgcttgtgaagtgtttatgcagggtgcataaggaaa 15181815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 9e-25; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 30908720 - 30908650
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactttgcccaa 172  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  30908720 aaatccaatggttgtgaagtgtttatgcacggtgcataaggaaatgacttatgcaccataacttttcccaa 30908650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 31216736 - 31216666
Alignment:
Q  96 tgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| ||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  31216736 tgaaagaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataacttt 31216666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 101 - 169
Target Start/End: Complemental strand, 6900872 - 6900804
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactttgcc 169  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  6900872 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataactttgcc 6900804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 34870078 - 34870148
Alignment:
Q  96 tgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| ||||||| |||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||    
T  34870078 tgaaagaaatctgatggttgtgatgtgtttatacatggtgcataaggaaatggcttatgcaccataacttt 34870148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 1449611 - 1449546
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||    
T  1449611 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaatggcttatgcaccataacttt 1449546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 1536893 - 1536958
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  1536893 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 1536958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 7089151 - 7089086
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| ||| |||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  7089151 gaaatctgatgattgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 7089086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 15493243 - 15493178
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||||||||||| ||| ||||||||||| ||| |||||||||||| ||||||||||||||||||    
T  15493243 gaaatctaatggttatgatgtgtttatgcacggtacataaggaaatggcttatgcaccataacttt 15493178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 4338454 - 4338510
Alignment:
Q  12 agagatgagagggggcggtgaggttgagattttcagagaagaaacaaaaatcagagg 68  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||    
T  4338454 agagatgagagggggcggtgaggttgagattttcggagaagaaacagaaatcggagg 4338510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 7764509 - 7764439
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactttgcccaa 172  Q
    ||||| ||| |||||||||||||||| || || ||||||| ||||| |||||||||||||||||| |||||    
T  7764509 aaatccaatagttgtgaagtgtttatacacggcgcataagaaaatggcttatgcaccataacttttcccaa 7764439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 27079939 - 27079991
Alignment:
Q  113 ttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactt 165  Q
    |||||||||||||||||| |||||||||| ||||||||||||||  |||||||    
T  27079939 ttgtgaagtgtttatgcacggtgcataagaaaatgacttatgcataataactt 27079991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 12394380 - 12394441
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||| |||||||||||||||||||| ||||||||||| | |  ||||||||||||||||||    
T  12394380 atctaaaggttgtgaagtgtttatgcacggtgcataagg-atttccttatgcaccataacttt 12394441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 16968028 - 16968090
Alignment:
Q  109 atggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactttgccca 171  Q
    |||||| ||||||||||||||| |||||||||| ||||| ||||||||  ||||| |||||||    
T  16968028 atggttatgaagtgtttatgcagggtgcataagaaaatggcttatgcataataacgttgccca 16968090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 18611254 - 18611192
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| ||||||||||||||||||||||  |||||||| |||||| ||||||||  ||||||||    
T  18611254 atctgatggttgtgaagtgtttatgcagagtgcataaagaaatgtcttatgcataataacttt 18611192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 35119300 - 35119243
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| |||||||||||||||||||||| ||||||||||     ||||||||||||||||||||    
T  35119300 atctgatggttgtgaagtgtttatgcacggtgcataag-----gacttatgcaccataacttt 35119243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 33346376 - 33346432
Alignment:
Q  109 atggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||||||||||||||||||| ||||||||||| | |  ||||||||||||||||||    
T  33346376 atggttgtgaagtgtttatgcacggtgcataagg-atttccttatgcaccataacttt 33346432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 4338618 - 4338672
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgca 156  Q
    |||||| ||| || ||||||||||||||| |||||||||| ||||| ||||||||    
T  4338618 aaatctgatgattttgaagtgtttatgcagggtgcataagaaaatggcttatgca 4338672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 32556398 - 32556348
Alignment:
Q  116 tgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| |||||||||| |||||||||| ||||||||||||||  ||||||||    
T  32556398 tgaattgtttatgcagggtgcataagaaaatgacttatgcataataacttt 32556348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 99
Target Start/End: Complemental strand, 34399771 - 34399742
Alignment:
Q  70 gtgtgtgcgatcagattgtgagagtgtgaa 99  Q
    ||||||||||||||||||||||||||||||    
T  34399771 gtgtgtgcgatcagattgtgagagtgtgaa 34399742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 9e-25; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 68 - 170
Target Start/End: Complemental strand, 53595069 - 53594968
Alignment:
Q  68 gcgtgtgtgcgatcagattgtgagagtgtgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactttg 167  Q
    |||||||||||||||||||||||||||| ||   |||||| |||||||||||||||||||||| |||||||||| ||||| ||||||||  |||||||||    
T  53595069 gcgtgtgtgcgatcagattgtgagagtgcgatc-aaatctgatggttgtgaagtgtttatgcagggtgcataagaaaatggcttatgcataataactttg 53594971  T
Q  168 ccc 170  Q
    |||    
T  53594970 ccc 53594968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 33414010 - 33414075
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  33414010 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataacttt 33414075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 41192348 - 41192412
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  41192348 aaatccaatggttgtgaagtgtttatgtacggtgcataaggaaatgacttatgcaccataacttt 41192412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 51846784 - 51846848
Alignment:
Q  108 aatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactttgcccaa 172  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||    
T  51846784 aatggttgtgaagtgtttatgcacggtgcataaggaaatggcttatgcaccataacttttcccaa 51846848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 9106341 - 9106271
Alignment:
Q  96 tgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| ||||||| |||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||    
T  9106341 tgaaagaaatctgatggttgtaatgtgtttatgcacggtgcataaggaaatgacttatgcaccataacttt 9106271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 3475404 - 3475469
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  3475404 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 3475469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 19284740 - 19284675
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  19284740 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 19284675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 46237755 - 46237820
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  46237755 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 46237820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 47335101 - 47335036
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  47335101 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 47335036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 51681996 - 51682064
Alignment:
Q  98 aaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  51681996 aaggaaatctgatggttgcgaagtgtttatgcagggtgcataaggaaatgacttatgcataataacttt 51682064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 30947903 - 30947973
Alignment:
Q  96 tgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| ||||| | ||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  30947903 tgaaagaaatttgatgattgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataacttt 30947973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 2941923 - 2941988
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| ||| ||||||||||| |||||||||||||||||||    
T  2941923 gaaatctgatggttgtgatgtgtttatgcacggtacataaggaaataacttatgcaccataacttt 2941988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 9595977 - 9596042
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||||  ||||||||||||||||||    
T  9595977 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaatagcttatgcaccataacttt 9596042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 26662535 - 26662600
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||||| ||||||||| ||||||||    
T  26662535 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaatggcttatgcacaataacttt 26662600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 54379224 - 54379167
Alignment:
Q  109 atggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  54379224 atggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 54379167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 26958224 - 26958280
Alignment:
Q  12 agagatgagagggggcggtgaggttgagattttcagagaagaaacaaaaatcagagg 68  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||    
T  26958224 agagatgagagggggcggtgaggttgagattttcagagaagatacagaaatcggagg 26958280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 34563345 - 34563409
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||| |||||||||||| |||||||||| |||||||||| ||||| ||||||||||||||||||    
T  34563345 aaatccaatggttgtgaaatgtttatgcacggtgcataagaaaatggcttatgcaccataacttt 34563409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 47728456 - 47728392
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||| |||||||||||||||||||||| |||||||||| ||||||||||||||  ||||||||    
T  47728456 aaatctgatggttgtgaagtgtttatgcagggtgcataagaaaatgacttatgcataataacttt 47728392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 6097681 - 6097746
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| || ||| ||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  6097681 gaaatctgatagttatgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 6097746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 32233048 - 32232995
Alignment:
Q  113 ttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  32233048 ttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataacttt 32232995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 28299960 - 28300004
Alignment:
Q  112 gttgtgaagtgtttatgcatggtgcataaggaaatgacttatgca 156  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  28299960 gttgtgaagtgtttatgcatggtacataaggaaatgacttatgca 28300004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 23755344 - 23755289
Alignment:
Q  111 ggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||  ||||||||    
T  23755344 ggttgtgaagtgtttatgcagggtgcataaggaaatgtcttatgcataataacttt 23755289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 10986421 - 10986356
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||| ||| ||||||||||| ||||||||||||||| |||||| || |||||||||    
T  10986421 gaaatctgatggttatgatgtgtttatgcacggtgcataaggaaataacttatacatcataacttt 10986356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 37319470 - 37319523
Alignment:
Q  114 tgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactttg 167  Q
    ||||||||||||||||| |||||||||| ||||||||||||||  |||||||||    
T  37319470 tgtgaagtgtttatgcagggtgcataagaaaatgacttatgcataataactttg 37319523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 19385313 - 19385376
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||| |||||||||||||||||||||| ||||||||||| | |  ||||||||||||||||||    
T  19385313 aaatctgatggttgtgaagtgtttatgcacggtgcataagg-atttccttatgcaccataacttt 19385376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 41568888 - 41568836
Alignment:
Q  113 ttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactt 165  Q
    ||||||||| |||||||||||||||||||||| |||||||||||  |||||||    
T  41568888 ttgtgaagtatttatgcatggtgcataaggaattgacttatgcataataactt 41568836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 51362436 - 51362499
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||| |||||||||||||||||||||| ||||||||||| | |  ||||||||||||||||||    
T  51362436 aaatctgatggttgtgaagtgtttatgcacggtgcataagg-atttccttatgcaccataacttt 51362499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 166
Target Start/End: Complemental strand, 26960676 - 26960630
Alignment:
Q  120 gtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||||||| ||||||||||||||| |||||| ||||||||||||    
T  26960676 gtgtttatgcacggtgcataaggaaataacttatacaccataacttt 26960630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 23699388 - 23699331
Alignment:
Q  109 atggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||||||||||||||||||| |||| ||||| ||||| ||||||||  ||||||||    
T  23699388 atggttgtgaagtgtttatgcagggtgtataagaaaatgtcttatgcataataacttt 23699331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 23717843 - 23717786
Alignment:
Q  109 atggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||||||||||||||||||| |||| ||||| ||||| ||||||||  ||||||||    
T  23717843 atggttgtgaagtgtttatgcagggtgtataagaaaatgtcttatgcataataacttt 23717786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 23736299 - 23736242
Alignment:
Q  109 atggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||||||||||||||||||| |||| ||||| ||||| ||||||||  ||||||||    
T  23736299 atggttgtgaagtgtttatgcagggtgtataagaaaatgtcttatgcataataacttt 23736242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 39195113 - 39195174
Alignment:
Q  109 atggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactttgccc 170  Q
    |||||| | ||||||| ||||| ||||||| |||||||||||||||||  ||||||||||||    
T  39195113 atggttataaagtgttcatgcagggtgcatgaggaaatgacttatgcataataactttgccc 39195174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 143
Target Start/End: Complemental strand, 50754071 - 50754032
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataagga 143  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  50754071 atctgatggttgtgaagtgtttatgcacggtgcataagga 50754032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 143
Target Start/End: Original strand, 52987650 - 52987689
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataagga 143  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  52987650 atctgatggttgtgaagtgtttatgcacggtgcataagga 52987689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 7045300 - 7045361
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| ||||||||||||||||||| || ||||||||| ||| |  ||||||||||||||||||    
T  7045300 atctgatggttgtgaagtgtttatacacggtgcataa-gaatttccttatgcaccataacttt 7045361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 9180111 - 9180153
Alignment:
Q  124 ttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| ||||||||||| || ||||||||||||||||||||    
T  9180111 ttatgcagggtgcataagggaaggacttatgcaccataacttt 9180153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 16933241 - 16933306
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  16933241 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataacttt 16933306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 16938624 - 16938689
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  16938624 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataacttt 16938689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 24359939 - 24359870
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactttgccca 171  Q
    ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||    
T  24359939 aaatccaatggttgtgaagtgttgatgcacggtgcataaggaaatgacttatgcaccataacttttccca 24359870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 68 - 156
Target Start/End: Original strand, 39007614 - 39007701
Alignment:
Q  68 gcgtgtgtgcgatcagattgtgagagtgtgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgca 156  Q
    ||||||||||||||||||||||| ||||  ||  |||| | |||||||||||||||||||||| |||||||||||||||||||||||||    
T  39007614 gcgtgtgtgcgatcagattgtgaaagtgc-aatcaaatatgatggttgtgaagtgtttatgcagggtgcataaggaaatgacttatgca 39007701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 20000665 - 20000736
Alignment:
Q  95 gtgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||| ||||||| |||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||    
T  20000665 gtgaaagaaatctgatggttgtgatgtgtttatgcacggtgcataagtaaatgacttatgcaccataacttt 20000736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 68 - 170
Target Start/End: Complemental strand, 34875590 - 34875489
Alignment:
Q  68 gcgtgtgtgcgatcagattgtgagagtgtgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactttg 167  Q
    |||||||||| |||||||  |||||||| ||   |||||| |||||||||||||||||||||| |||||||||||||||| ||||||||  |||||||||    
T  34875590 gcgtgtgtgcaatcagatattgagagtgcgatc-aaatctgatggttgtgaagtgtttatgcagggtgcataaggaaatggcttatgcataataactttg 34875492  T
Q  168 ccc 170  Q
    |||    
T  34875491 ccc 34875489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 763766 - 763701
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||    
T  763766 gaaatctgatggttgtgacgtgtttatgcacggtgcataaggaaatggcttatgcaccataacttt 763701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 11732645 - 11732714
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactttgccca 171  Q
    |||||||||||||||||||||||||||||  ||||||||| ||||| |||||||||||||||||| ||||    
T  11732645 aaatctaatggttgtgaagtgtttatgcacagtgcataagaaaatggcttatgcaccataacttttccca 11732714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 30884219 - 30884284
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  30884219 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 30884284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 31660138 - 31660073
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  31660138 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 31660073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 41911107 - 41911171
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  41911107 aaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 41911171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 46358588 - 46358524
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  46358588 aaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 46358524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 44141256 - 44141313
Alignment:
Q  109 atggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  44141256 atggttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcatgataacttt 44141313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 5757452 - 5757390
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| |||||||||||||||||||||| |||||||||||||||| ||||||||  ||||||||    
T  5757452 atctgatggttgtgaagtgtttatgcacggtgcataaggaaatgtcttatgcataataacttt 5757390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 47340216 - 47340150
Alignment:
Q  101 gaaatctaatggttgtgaagtgttt-atgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| |||||| ||||| |||||||||| |||| |||||||||||||||||||    
T  47340216 gaaatctgatggttgtgatgtgttttatgcacggtgcataagaaaataacttatgcaccataacttt 47340150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 166
Target Start/End: Original strand, 6797394 - 6797447
Alignment:
Q  113 ttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||||||||||||||| | |||||||||||||||||||||||  ||||||||    
T  6797394 ttgtgaagtgtttatgcaggatgcataaggaaatgacttatgcataataacttt 6797447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 35737009 - 35736963
Alignment:
Q  109 atggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgc 155  Q
    |||||||||| ||||||||||| ||||||||||||||| ||||||||    
T  35737009 atggttgtgatgtgtttatgcacggtgcataaggaaataacttatgc 35736963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 15974941 - 15974997
Alignment:
Q  109 atggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||||||||||||||||||| ||||||||||| | |  ||||||||||||||||||    
T  15974941 atggttgtgaagtgtttatgcacggtgcataagg-atttccttatgcaccataacttt 15974997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 27335629 - 27335677
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttat 153  Q
    |||| |||||||||||||||||||||| |||||||||| |||||||||||    
T  27335629 atctgatggttgtgaagtgtttatgca-ggtgcataagaaaatgacttat 27335677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 46346721 - 46346778
Alignment:
Q  109 atggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||||||||||||||| || | |||||||| ||||||||||||||  ||||||||    
T  46346721 atggttgtgaagtgtttatacaggatgcataagaaaatgacttatgcataataacttt 46346778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 143
Target Start/End: Complemental strand, 46024092 - 46024053
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataagga 143  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  46024092 atctgatggttgtgaagtgtttatgcacggtgcataagga 46024053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 12279810 - 12279749
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||||||||||||||| |||||||| ||||||||| | | |  ||||||||||||||||||    
T  12279810 atctaatggttgtgaagtctttatgcacggtgcataaag-atttccttatgcaccataacttt 12279749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 30428938 - 30428877
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| ||||||||||| |||||||||| ||||||||||| | |  ||||||||||||||||||    
T  30428938 atctgatggttgtgaaatgtttatgcacggtgcataagg-atttccttatgcaccataacttt 30428877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 166
Target Start/End: Original strand, 45402879 - 45402932
Alignment:
Q  113 ttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| ||||||||||||  ||||||||||||||| |||||||||  ||||||||    
T  45402879 ttgtaaagtgtttatgctgggtgcataaggaaataacttatgcataataacttt 45402932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 25778904 - 25778841
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||| |||||||||||||| |||||||  |||||||| ||| |  ||||||||||||||||||    
T  25778904 aaatctgatggttgtgaagtgcttatgcacagtgcataa-gaattttcttatgcaccataacttt 25778841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 668 - 738
Alignment:
Q  96 tgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| ||||||| |||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||    
T  668 tgaaagaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaatggcttatgcaccataacttt 738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 33758 - 33688
Alignment:
Q  96 tgaaggaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| ||||||| |||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||    
T  33758 tgaaagaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaatggcttatgcaccataacttt 33688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 15016563 - 15016628
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  15016563 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 15016628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 39355104 - 39355039
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  39355104 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 39355039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 18762929 - 18762871
Alignment:
Q  108 aatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  18762929 aatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 18762871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 39548103 - 39548041
Alignment:
Q  109 atggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactttgccca 171  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |  |||||||||||||    
T  39548103 atggttgtgaagtgtttatgcagggtgcataaggaaatgacttatgtataataactttgccca 39548041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 2263634 - 2263577
Alignment:
Q  109 atggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||    
T  2263634 atggttgtgaagtgtttatgcacggtgcataaagaaatggcttatgcaccataacttt 2263577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 5098777 - 5098720
Alignment:
Q  109 atggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  5098777 atggttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataacttt 5098720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 7487251 - 7487316
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||||  ||||||||||||||||||    
T  7487251 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaatagcttatgcaccataacttt 7487316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 8149900 - 8149835
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| | |||||||||||||| ||||||||||||||||||    
T  8149900 gaaatctgatggttgtgatgtgtttatgcacgatgcataaggaaatggcttatgcaccataacttt 8149835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 8154524 - 8154459
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||||| | |||||||||||||| ||||||||||||||||||    
T  8154524 gaaatctgatggttgtgatgtgtttatgcacgatgcataaggaaatggcttatgcaccataacttt 8154459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 9143654 - 9143589
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| ||| |||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  9143654 gaaatctgatgattgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 9143589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 34464780 - 34464715
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| ||||||||||  |||||||||| ||||||||||||||| |||||||||||||||||||    
T  34464780 gaaatctgatggttgtgatatgtttatgcacggtgcataaggaaataacttatgcaccataacttt 34464715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 1292176 - 1292241
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| ||||||||| | |||||||||| |||| |||||||||||||||||||    
T  1292176 gaaatctgatggttgtgatgtgtttatgtacggtgcataagaaaataacttatgcaccataacttt 1292241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 13081865 - 13081926
Alignment:
Q  109 atggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactttgccc 170  Q
    |||||||||||||||||||| | ||||||||| |||||||||||||||  ||||||||||||    
T  13081865 atggttgtgaagtgtttatgtagggtgcataatgaaatgacttatgcataataactttgccc 13081926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 16142073 - 16142141
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactttgccc 170  Q
    |||||||||||||||||||||||||||||  ||||||||||||||| ||| ||||  |||| |||||||    
T  16142073 aaatctaatggttgtgaagtgtttatgcagcgtgcataaggaaatggcttgtgcataataaatttgccc 16142141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 24024633 - 24024685
Alignment:
Q  113 ttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactt 165  Q
    |||||||||||||||||||||||||||||||| |||||||||||  |||||||    
T  24024633 ttgtgaagtgtttatgcatggtgcataaggaattgacttatgcataataactt 24024685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 25192957 - 25192896
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||||||||||||||||||||||| ||||||||||| | |  ||||||||||||||||||    
T  25192957 atctaatggttgtgaagtgtttatgcacggtgcataagg-atttccttatgcaccataacttt 25192896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 41346044 - 41346102
Alignment:
Q  108 aatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||||||||||||||||  | |||||||||| ||||| ||||||||||||||||||    
T  41346044 aatggttgtgaagtgtttatatacggtgcataagaaaatggcttatgcaccataacttt 41346102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 25995354 - 25995290
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||| ||||||||||||| ||||||||  ||||||||||||||| ||||||||  ||||||||    
T  25995354 aaatctgatggttgtgaagtatttatgcagagtgcataaggaaatgtcttatgcataataacttt 25995290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 36636935 - 36636999
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||| |||||||||||||||||||| | ||| |||||| ||||||||||||||  ||||||||    
T  36636935 aaatctgatggttgtgaagtgtttatgtagggtacataagaaaatgacttatgcataataacttt 36636999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 40853685 - 40853740
Alignment:
Q  110 tggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactt 165  Q
    ||||||||||||||||||||| | |||||||||||||| ||||||||  |||||||    
T  40853685 tggttgtgaagtgtttatgcaggatgcataaggaaatggcttatgcataataactt 40853740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 18298111 - 18298172
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| |||||||||||||||||||||| ||||||||||| | |  ||||||||||||||||||    
T  18298111 atctgatggttgtgaagtgtttatgcacggtgcataagg-atttccttatgcaccataacttt 18298172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 143
Target Start/End: Original strand, 4579818 - 4579857
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataagga 143  Q
    |||| |||||||| ||||||||||||||||||||||||||    
T  4579818 atctgatggttgtaaagtgtttatgcatggtgcataagga 4579857  T

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Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 163
Target Start/End: Complemental strand, 21155480 - 21155441
Alignment:
Q  124 ttatgcatggtgcataaggaaatgacttatgcaccataac 163  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  21155480 ttatgcacggtgcataaggaaatggcttatgcaccataac 21155441  T

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Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 163
Target Start/End: Original strand, 27974291 - 27974330
Alignment:
Q  124 ttatgcatggtgcataaggaaatgacttatgcaccataac 163  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  27974291 ttatgcacggtgcataaggaaatggcttatgcaccataac 27974330  T

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Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 163
Target Start/End: Original strand, 28060820 - 28060859
Alignment:
Q  124 ttatgcatggtgcataaggaaatgacttatgcaccataac 163  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  28060820 ttatgcacggtgcataaggaaatggcttatgcaccataac 28060859  T

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Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 166
Target Start/End: Complemental strand, 3925624 - 3925582
Alignment:
Q  124 ttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| ||||||||||| || ||||||||||||||||||||    
T  3925624 ttatgcagggtgcataagggaaggacttatgcaccataacttt 3925582  T

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Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 4281788 - 4281850
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| ||||||||||||||||||| ||  || |||||||||||| ||||||||  ||||||||    
T  4281788 atctgatggttgtgaagtgtttatacagagtacataaggaaatgtcttatgcataataacttt 4281850  T

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Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 20709839 - 20709778
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| |||||||||||||||||||||| |||| |||||| | |  ||||||||||||||||||    
T  20709839 atctgatggttgtgaagtgtttatgcacggtggataagg-atttccttatgcaccataacttt 20709778  T

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Target: scaffold0581 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0581
Description:

Target: scaffold0581; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 8418 - 8483
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||| |||||||||| |||||||||||  ||||||||||||||| ||||||||||||||||||    
T  8418 gaaatctgatggttgtgatgtgtttatgcacagtgcataaggaaatggcttatgcaccataacttt 8483  T

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Target: scaffold0074 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 24343 - 24278
Alignment:
Q  101 gaaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||| |||||||||||| ||||||||||| ||| |||||||||||| ||||||||||||||||||    
T  24343 gaaatttaatggttgtgatgtgtttatgcacggtacataaggaaatggcttatgcaccataacttt 24278  T

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Target: scaffold0460 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 156
Target Start/End: Complemental strand, 1661 - 1618
Alignment:
Q  113 ttgtgaagtgtttatgcatggtgcataaggaaatgacttatgca 156  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  1661 ttgtgaagtgtttatgcagggtgcataaggaaatgacttatgca 1618  T

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Target: scaffold0006 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 209383 - 209330
Alignment:
Q  113 ttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||||||||||||||| |||||||||| ||||||||||||||  ||||||||    
T  209383 ttgtgaagtgtttatgcagggtgcataagaaaatgacttatgcataataacttt 209330  T

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Target: scaffold0006; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 113 - 156
Target Start/End: Complemental strand, 171562 - 171519
Alignment:
Q  113 ttgtgaagtgtttatgcatggtgcataaggaaatgacttatgca 156  Q
    ||||||||||||||| || |||||||||||||||||||||||||    
T  171562 ttgtgaagtgtttatacagggtgcataaggaaatgacttatgca 171519  T

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Target: scaffold0238 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 25230 - 25293
Alignment:
Q  102 aaatctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||||| |||||||||||||||||||||| ||||||||||| | |  ||||||||||||||||||    
T  25230 aaatctgatggttgtgaagtgtttatgcacggtgcataagg-atttccttatgcaccataacttt 25293  T

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Target: scaffold0069 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 113 - 156
Target Start/End: Complemental strand, 51416 - 51373
Alignment:
Q  113 ttgtgaagtgtttatgcatggtgcataaggaaatgacttatgca 156  Q
    |||||||||||||||||| |||||||||| ||||||||||||||    
T  51416 ttgtgaagtgtttatgcagggtgcataagaaaatgacttatgca 51373  T

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Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 450256 - 450206
Alignment:
Q  116 tgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    ||||||||||||||| |||| ||||||||||||||||||||  ||||||||    
T  450256 tgaagtgtttatgcaaggtgtataaggaaatgacttatgcataataacttt 450206  T

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Target: scaffold0544 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 10675 - 10736
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| |||||||||||||||||||||| |||| |||||| | |  ||||||||||||||||||    
T  10675 atctgatggttgtgaagtgtttatgcacggtgtataagg-atttccttatgcaccataacttt 10736  T

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Target: scaffold0097 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 13678 - 13617
Alignment:
Q  104 atctaatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 166  Q
    |||| |||||||||||||||||||||| |||| |||||| | |  ||||||||||||||||||    
T  13678 atctgatggttgtgaagtgtttatgcacggtggataagg-atttccttatgcaccataacttt 13617  T

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Target: scaffold0012 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 119259 - 119218
Alignment:
Q  113 ttgtgaagtgtttatgcatggtgcataaggaaatgacttatg 154  Q
    |||||||||||||||||| ||||||||  |||||||||||||    
T  119259 ttgtgaagtgtttatgcagggtgcatatagaaatgacttatg 119218  T

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Target: scaffold0717 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 7351 - 7403
Alignment:
Q  113 ttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactt 165  Q
    |||||||||||||||||| ||||||||||||  ||| |||||||  |||||||    
T  7351 ttgtgaagtgtttatgcagggtgcataaggatctgatttatgcataataactt 7403  T

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Target: scaffold0337 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 98
Target Start/End: Complemental strand, 7147 - 7119
Alignment:
Q  70 gtgtgtgcgatcagattgtgagagtgtga 98  Q
    |||||||||||||||||||||||||||||    
T  7147 gtgtgtgcgatcagattgtgagagtgtga 7119  T

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