View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0925_low_2 (Length: 848)

Name: NF0925_low_2
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0925_low_2
NF0925_low_2
[»] chr7 (9 HSPs)
chr7 (30-646)||(31200879-31201496)
chr7 (651-836)||(31200657-31200842)
chr7 (30-236)||(31063672-31063878)
chr7 (43-157)||(31051232-31051346)
chr7 (731-820)||(39051324-39051413)
chr7 (30-142)||(31108759-31108871)
chr7 (730-814)||(285651-285733)
chr7 (41-151)||(31146520-31146630)
chr7 (41-151)||(31164346-31164456)
[»] chr5 (6 HSPs)
chr5 (730-813)||(10353940-10354023)
chr5 (730-795)||(33900041-33900106)
chr5 (731-819)||(29638812-29638900)
chr5 (747-794)||(1623346-1623393)
chr5 (731-794)||(38475912-38475975)
chr5 (731-760)||(1436911-1436940)
[»] scaffold0010 (1 HSPs)
scaffold0010 (731-825)||(250355-250449)
[»] chr8 (1 HSPs)
chr8 (731-820)||(3694151-3694240)
[»] chr4 (3 HSPs)
chr4 (731-819)||(19141972-19142060)
chr4 (731-819)||(41500069-41500157)
chr4 (731-825)||(43405533-43405627)
[»] chr3 (2 HSPs)
chr3 (731-819)||(675658-675746)
chr3 (730-825)||(27836735-27836828)
[»] chr1 (5 HSPs)
chr1 (731-819)||(4816197-4816285)
chr1 (731-819)||(22581695-22581783)
chr1 (731-819)||(34059766-34059854)
chr1 (730-815)||(8265646-8265729)
chr1 (766-819)||(10069247-10069300)
[»] scaffold0018 (1 HSPs)
scaffold0018 (730-825)||(38677-38770)
[»] chr2 (1 HSPs)
chr2 (730-828)||(40142214-40142312)


Alignment Details
Target: chr7 (Bit Score: 598; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 30 - 646
Target Start/End: Complemental strand, 31201496 - 31200879
Alignment:
Q  30 gcaaccctagctcttggcgaaccaccttttacagtaccattgccaatagcaaatacacttgcatctggtacaaagtttcccccagctgttgatagagtat 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31201496 gcaaccctagctcttggcgaaccaccttttacagtaccattgccaatagcaaatacacttgcatctggtacaaagtttcccccagctgttgatagagtat 31201397  T
Q  130 gagtaccgtggcctaaaaagtcgcgtgcggtacgttgccatgagggaagcttgtcactgtatgcctcgtaagcattgctgaagaatctggctccaattag 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31201396 gagtaccgtggcctaaaaagtcgcgtgcggtacgttgccatgagggaagcttgtcattgtatgcctcgtaagcattgctgaagaatctggctccaattag 31201297  T
Q  230 cttcctgtttatatataacaagaataattagtcctactccaatcagttttccctatcttggtaaccacggaaaaaatcagcatccgagggtctcaaacta 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31201296 cttcctgtttatatataacaagaataattagtcctactccaatcagttttccctatcttggtaaccacggaaaaaatcagcatccgagggtctcaaacta 31201197  T
Q  330 aacg-ggtagtcctagtaggatctccggacacaggtgaaaattgacatttatatgaccacagatctcatcctatcatgattttggtttgcacttgataac 428  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31201196 aacgaggtagtcctagtaggatctccggacacaggtgaaaattgacatttatatgaccacagatctcatcctatcatgattttggtttgcacttgataac 31201097  T
Q  429 aaattaattacattgtcattatagtatgatatcatatggtatttgagatgatgcacgaaaaaacgggccttgtttgttatcattgccttggaacaaaaag 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31201096 aaattaattacattgtcattatagtatgatatcatatggtatttgagatgatgcacgaaaaaacgggccttgtttgttatcattgccttggaacaaaaag 31200997  T
Q  529 ggtgtagaattactatctgctacgggttcaagaaaggacctgtgaaaaatagatggagggtcataattcataagcatgggaacattttctgttttgaact 628  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31200996 ggtgtagaattactatttgctacgggttcaagaaaggacatgtgaaaaatagatggagggtcataattcataagcatgggaacattttctgttttgaact 31200897  T
Q  629 aattaattgagtgggtgt 646  Q
    ||||||||||||||||||    
T  31200896 aattaattgagtgggtgt 31200879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 651 - 836
Target Start/End: Complemental strand, 31200842 - 31200657
Alignment:
Q  651 tcaatcttttgaactttgattaataattataacaatatatacaaaaaattacatttacttaatttacattgtactaaaatgttgaataatcaactcatta 750  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31200842 tcaatcttttgaactttgattaataattataacaatatatacaaaaaattacatttacttaatttacattgtactaaaatgttgaataatcaactcatta 31200743  T
Q  751 tcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatttcattatgcgttatatt 836  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31200742 tcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccatttcattatgcgttatatt 31200657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 30 - 236
Target Start/End: Original strand, 31063672 - 31063878
Alignment:
Q  30 gcaaccctagctcttggcgaaccaccttttacagtaccattgccaatagcaaatacacttgcatctggtacaaagtttcccccagctgttgatagagtat 129  Q
    ||||| ||||||||||| ||||| |||||||  |||||||| |||||   |||||  |||||| ||||||| |||||||| || ||||||||||| ||||    
T  31063672 gcaactctagctcttggtgaacctccttttatggtaccatttccaatgttaaatatgcttgcacctggtacgaagtttccaccggctgttgatagtgtat 31063771  T
Q  130 gagtaccgtggcctaaaaagtcgcgtgcggtacgttgccatgagggaagcttgtcactgtatgcctcgtaagcattgctgaagaatctggctccaattag 229  Q
    |||||||||| |||| |||||| ||||| ||||| ||| ||| |||||| ||| || | |||  ||| ||||||| |||||| |||||||||||||||||    
T  31063772 gagtaccgtgacctacaaagtcacgtgctgtacgctgcgatgtgggaagtttgccattatatcgctcataagcatcgctgaaaaatctggctccaattag 31063871  T
Q  230 cttcctg 236  Q
    |||||||    
T  31063872 cttcctg 31063878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 43 - 157
Target Start/End: Original strand, 31051232 - 31051346
Alignment:
Q  43 ttggcgaaccaccttttacagtaccattgccaatagcaaatacacttgcatctggtacaaagtttcccccagctgttgatagagtatgagtaccgtggcc 142  Q
    |||| ||||||||||| |  ||||||||||| ||| ||||||  |||||| ||||||| |||||||| |||||||||||||| || |||||||| |||||    
T  31051232 ttggtgaaccacctttaatggtaccattgccgataccaaatatgcttgcacctggtacgaagtttccaccagctgttgatagtgtgtgagtaccatggcc 31051331  T
Q  143 taaaaagtcgcgtgc 157  Q
      ||||||| |||||    
T  31051332 gtaaaagtcacgtgc 31051346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 731 - 820
Target Start/End: Original strand, 39051324 - 39051413
Alignment:
Q  731 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccattt 820  Q
    |||||||||||||||||| |||||| |||||   || |||||| | |||||||||||||||| ||| |||||||||||||||| ||||||    
T  39051324 gttgaataatcaactcatcatcaatcttgtccgccacatctctctcaatataagtcacaagataatcattcatccattcatctcccattt 39051413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 31108759 - 31108871
Alignment:
Q  30 gcaaccctagctcttggcgaaccaccttttacagtaccattgccaatagcaaatacacttgcatctggtacaaagtttcccccagctgttgatagagtat 129  Q
    ||||| ||||||||||| ||||| |||||||  |||||||| |||||   |||||  |||||| ||||||| || ||||| |||||||||||||| || |    
T  31108759 gcaactctagctcttggtgaacctccttttatggtaccatttccaatgttaaatatgcttgcacctggtacgaaatttccaccagctgttgatagtgtgt 31108858  T
Q  130 gagtaccgtggcc 142  Q
    ||||||| |||||    
T  31108859 gagtaccatggcc 31108871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 730 - 814
Target Start/End: Original strand, 285651 - 285733
Alignment:
Q  730 tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatctt 814  Q
    |||||| |||| ||||| ||||||||||||||||| |||||||||| |||||  ||||| |||||||  ||| || |||||||||    
T  285651 tgttgagtaataaactctttatcaatgttgtcgaatatatctctttcaatat--gtcacgagacaatcgttcgtcaattcatctt 285733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 151
Target Start/End: Original strand, 31146520 - 31146630
Alignment:
Q  41 tcttggcgaaccaccttttacagtaccattgccaatagcaaatacacttgcatctggtacaaagtttcccccagctgttgatagagtatgagtaccgtgg 140  Q
    |||||| |||||||||||||  ||||| ||||||||| ||||||   |||| | | |||| |||||||| || ||||||||||| || || || || |||    
T  31146520 tcttggtgaaccaccttttatggtaccgttgccaataccaaatatggttgcgttttgtacgaagtttccacctgctgttgatagtgtgtgtgtcccatgg 31146619  T
Q  141 cctaaaaagtc 151  Q
    |||| ||||||    
T  31146620 cctacaaagtc 31146630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 151
Target Start/End: Original strand, 31164346 - 31164456
Alignment:
Q  41 tcttggcgaaccaccttttacagtaccattgccaatagcaaatacacttgcatctggtacaaagtttcccccagctgttgatagagtatgagtaccgtgg 140  Q
    |||||| |||||||||||||  ||||| ||||||||| ||||||   |||| | | |||| |||||||| || ||||||||||| || || || || |||    
T  31164346 tcttggtgaaccaccttttatggtaccgttgccaataccaaatatggttgcgttttgtacgaagtttccacctgctgttgatagtgtgtgtgtcccatgg 31164445  T
Q  141 cctaaaaagtc 151  Q
    |||| ||||||    
T  31164446 cctacaaagtc 31164456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 730 - 813
Target Start/End: Complemental strand, 10354023 - 10353940
Alignment:
Q  730 tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatct 813  Q
    |||||||| |||| ||||||||||||||||| ||||| |||| | | |||||||| ||| ||||||| ||||||||||||||||    
T  10354023 tgttgaatgatcacctcattatcaatgttgttgaacacatctttctcaatataagccactagacaatcattcatccattcatct 10353940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 730 - 795
Target Start/End: Complemental strand, 33900106 - 33900041
Alignment:
Q  730 tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaa 795  Q
    |||||||||||||||||||||||||||||| || | | ||||| ||||||||||  ||||||||||    
T  33900106 tgttgaataatcaactcattatcaatgttgccggatagatctcgtttaatataaaccacaagacaa 33900041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 731 - 819
Target Start/End: Complemental strand, 29638900 - 29638812
Alignment:
Q  731 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatt 819  Q
    |||||||||||||||||| |||||| |||||   || |||||| | ||||||||| || ||||||| ||||||||| |||||| |||||    
T  29638900 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtgacgagacaatcattcatccaatcatctcccatt 29638812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 747 - 794
Target Start/End: Original strand, 1623346 - 1623393
Alignment:
Q  747 attatcaatgttgtcgaacatatctcttttaatataagtcacaagaca 794  Q
    ||||||||||||||||||||||||| || |||||||| |||| |||||    
T  1623346 attatcaatgttgtcgaacatatcttttctaatataaatcaccagaca 1623393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 731 - 794
Target Start/End: Complemental strand, 38475975 - 38475912
Alignment:
Q  731 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagaca 794  Q
    ||||||||||||||||||||||||  || | ||||| |||||| | ||| ||||||||||||||    
T  38475975 gttgaataatcaactcattatcaacctttttgaacacatctctctcaatgtaagtcacaagaca 38475912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 731 - 760
Target Start/End: Original strand, 1436911 - 1436940
Alignment:
Q  731 gttgaataatcaactcattatcaatgttgt 760  Q
    ||||||||||||||||||||||||||||||    
T  1436911 gttgaataatcaactcattatcaatgttgt 1436940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 731 - 825
Target Start/End: Original strand, 250355 - 250449
Alignment:
Q  731 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatttcatta 825  Q
    |||||||||||||||||| |||||| |||||   || |||||| | |||||||||||| ||||||| ||||||||| |||||| |||||| ||||    
T  250355 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatttgatta 250449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 731 - 820
Target Start/End: Original strand, 3694151 - 3694240
Alignment:
Q  731 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccattt 820  Q
    ||||||||||||| ||||  ||||| |||||   || |||||| | |||||||||||||||||||| |||||||||||||||| ||||||    
T  3694151 gttgaataatcaattcatcgtcaatcttgtccgccacatctctctcaatataagtcacaagacaatcattcatccattcatctcccattt 3694240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 731 - 819
Target Start/End: Complemental strand, 19142060 - 19141972
Alignment:
Q  731 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatt 819  Q
    |||||||||||||||||| |||||| |||||   || |||||| | |||||||||||| ||||||| ||||||||| |||||| |||||    
T  19142060 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatt 19141972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 731 - 819
Target Start/End: Original strand, 41500069 - 41500157
Alignment:
Q  731 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatt 819  Q
    |||||||||||||||||| |||||| |||||   || |||||| | |||||||||||| ||||||| ||||||||| |||||| |||||    
T  41500069 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatt 41500157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 731 - 825
Target Start/End: Complemental strand, 43405627 - 43405533
Alignment:
Q  731 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatttcatta 825  Q
    |||||||||||||||||| |||||| ||||||  ||||||||| | ||||||||| ||  |||||| |||||| || |||||| |||||| ||||    
T  43405627 gttgaataatcaactcatcatcaattttgtcggccatatctctctcaatataagttacgggacaatcattcatgcaatcatctcccattttatta 43405533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 731 - 819
Target Start/End: Original strand, 675658 - 675746
Alignment:
Q  731 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatt 819  Q
    |||||||||||||||||| |||||| |||||   || |||||| | |||||||||||| ||||||| ||||||||| |||||| |||||    
T  675658 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatt 675746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 730 - 825
Target Start/End: Complemental strand, 27836828 - 27836735
Alignment:
Q  730 tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatttcatta 825  Q
    |||||| |||| ||||| ||||||||||||||||| |||||||||| |||||  ||||| |||||||  ||| || ||||||||||| ||| ||||    
T  27836828 tgttgagtaataaactctttatcaatgttgtcgaatatatctctttcaatat--gtcacgagacaatcgttcgtcaattcatcttccttttgatta 27836735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 731 - 819
Target Start/End: Complemental strand, 4816285 - 4816197
Alignment:
Q  731 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatt 819  Q
    |||||||||||||||||| |||||| |||||   || |||||| | |||||||||||| ||||||| ||||||||| |||||| |||||    
T  4816285 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatt 4816197  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 731 - 819
Target Start/End: Complemental strand, 22581783 - 22581695
Alignment:
Q  731 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatt 819  Q
    |||||||||||||||||| |||||| |||||   || |||||| | |||||||||||| ||||||| ||||||||  |||||| |||||    
T  22581783 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatcccatcatctcccatt 22581695  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 731 - 819
Target Start/End: Complemental strand, 34059854 - 34059766
Alignment:
Q  731 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatt 819  Q
    |||||||||||||||||| |||||| |||||   || |||||| | ||||||||| || ||||||| ||||||||| |||||| |||||    
T  34059854 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagttacgagacaatcattcatccaatcatctcccatt 34059766  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 730 - 815
Target Start/End: Original strand, 8265646 - 8265729
Alignment:
Q  730 tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttc 815  Q
    ||||||| |||||||  ||||||||| ||||| || || |||||   |||||||||||||||||||| |||||| |||||||||||    
T  8265646 tgttgaacaatcaacctattatcaatattgtctaatatgtctctc--aatataagtcacaagacaatcattcattcattcatcttc 8265729  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 766 - 819
Target Start/End: Complemental strand, 10069300 - 10069247
Alignment:
Q  766 atatctcttttaatataagtcacaagacaataattcatccattcatcttccatt 819  Q
    ||||| |||| |||||||||||| ||||||| ||||||||||||||| ||||||    
T  10069300 atatccctttcaatataagtcactagacaatcattcatccattcatcctccatt 10069247  T

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Target: scaffold0018 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 730 - 825
Target Start/End: Complemental strand, 38770 - 38677
Alignment:
Q  730 tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatttcatta 825  Q
    |||||| |||| ||||| ||||||||||||||||| |||||||||| |||||  ||||| |||||||  ||| || ||||||||||| ||| ||||    
T  38770 tgttgagtaataaactctttatcaatgttgtcgaatatatctctttcaatat--gtcacgagacaatcgttcgtcaattcatcttccttttgatta 38677  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 730 - 828
Target Start/End: Complemental strand, 40142312 - 40142214
Alignment:
Q  730 tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatttcattatgc 828  Q
    ||||||||||||||||||  |||||||||||| |||| |   || | |||||||||||  |||||||  |||||||| |||||| |||||| |||||||    
T  40142312 tgttgaataatcaactcacgatcaatgttgtctaacacactcctctcaatataagtcatgagacaatcgttcatccactcatctcccatttgattatgc 40142214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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