View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0925_low_20 (Length: 507)
Name: NF0925_low_20
Description: NF0925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0925_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 418 - 497
Target Start/End: Complemental strand, 26032294 - 26032215
Alignment:
| Q |
418 |
attacttcgcaaagcttggagctagatcggatgctagcatcttcctccactcatctccccctgatgatcttcgtcctttg |
497 |
Q |
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| T |
26032294 |
attacttcgcaaagcttggagctagatcgaatgccagccttttcctccactcatctccccctgatgatcttcgtcctttg |
26032215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 37 - 436
Target Start/End: Complemental strand, 46782874 - 46782475
Alignment:
| Q |
37 |
gatggaatgaaaacaattttgattgcgccatactaaacgtggacggcagctgtattggttctccttctcggacagggttcagtggattaatccgcaacag |
136 |
Q |
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| T |
46782874 |
gatggaataacaacaatttcgactgtgcaattctcaacgtcgacggtagttgtattggttctccaactcggacaggttttggcggtttatttcgcaacaa |
46782775 |
T |
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| Q |
137 |
ctagggcttctacccaataggattttcaggttcccttccttcctcctcagacatcctagaagcggagctaactgccatccttcatgggcttatagtagct |
236 |
Q |
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| T |
46782774 |
cgcaggtttctacctgctaggattttcaggttcccttccttcatcagcagatattttagaagcggaactgtctgcaattttgcacggtcttactttagct |
46782675 |
T |
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| Q |
237 |
aaagatatggaaactgtagagttgatttgttattcggattctctcctatcaattaatcttatcaccgacaatccctctaagtttcatgttcacgctgtcc |
336 |
Q |
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| T |
46782674 |
ttggataacgacattgaagagttggtttgctactcggattctctcctttctatcaacctcataaccggtaactcttctaagtttcatgttcatgctgttc |
46782575 |
T |
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| Q |
337 |
tcatccaggaaattaaagacaaacttgctcagttgaactgtttgcttcttcatactcttcgcgagggtaaccattgtgcagattacttcgcaaagcttgg |
436 |
Q |
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| T |
46782574 |
tcatccaggatattaaagataaattgtcacagttgaattgttctctccatcacacgcttcgcgaagggaatcattgtgcagattattttgccaagcttgg |
46782475 |
T |
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